메뉴 건너뛰기




Volumn 6, Issue 1, 2014, Pages

Replication-fork dynamics

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84891649417     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a010157     Document Type: Article
Times cited : (24)

References (116)
  • 1
    • 0037160068 scopus 로고    scopus 로고
    • Characterization of simian virus 40 T-antigen double hexamers bound to a replication fork: The active form of the helicase
    • Alexandrov AI, Botchan MR, Cozzarelli NR. 2002. Characterization of simian virus 40 T-antigen double hexamers bound to a replication fork: The active form of the helicase. J Biol Chem 277: 44886-44897.
    • (2002) J Biol Chem , vol.277 , pp. 44886-44897
    • Alexandrov, A.I.1    Botchan, M.R.2    Cozzarelli, N.R.3
  • 2
    • 35348979683 scopus 로고    scopus 로고
    • Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase
    • Bailey S, Eliason WK, Steitz TA. 2007. Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase. Science 318: 459-463.
    • (2007) Science , vol.318 , pp. 459-463
    • Bailey, S.1    Eliason, W.K.2    Steitz, T.A.3
  • 3
    • 0035997368 scopus 로고    scopus 로고
    • DNA replication in eukaryotic cells
    • Bell SP, Dutta A. 2002. DNA replication in eukaryotic cells. Annu Rev Biochem 71: 333-374.
    • (2002) Annu Rev Biochem , vol.71 , pp. 333-374
    • Bell, S.P.1    Dutta, A.2
  • 4
    • 0028333942 scopus 로고
    • Human replication protein A binds single-stranded DNA in two distinct complexes
    • Blackwell LJ, Borowiec JA. 1994. Human replication protein A binds single-stranded DNA in two distinct complexes. Mol Cell Biol 14: 3993-4001.
    • (1994) Mol Cell Biol , vol.14 , pp. 3993-4001
    • Blackwell, L.J.1    Borowiec, J.A.2
  • 5
    • 15244359893 scopus 로고    scopus 로고
    • Independence of replisomes in Escherichia coli chromosomal replication
    • Breier AM, Weier H-UG, Cozzarelli NR. 2005. Independence of replisomes in Escherichia coli chromosomal replication. Proc Natl Acad Sci 102: 3942-3947.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 3942-3947
    • Breier, A.M.1    Weier, H.-U.G.2    Cozzarelli, N.R.3
  • 6
    • 0343471361 scopus 로고    scopus 로고
    • Dissociation of bacteriophage T4 DNA polymerase and its processivity clamp after completion of Okazaki fragment synthesis
    • Carver TE Jr, Sexton DJ, Benkovic SJ. 1997. Dissociation of bacteriophage T4 DNA polymerase and its processivity clamp after completion of Okazaki fragment synthesis. Biochemistry 36: 14409-14417.
    • (1997) Biochemistry , vol.36 , pp. 14409-14417
    • Carver Jr., T.E.1    Sexton, D.J.2    Benkovic, S.J.3
  • 7
    • 0016769419 scopus 로고
    • The replication time of the Escherichia coli K12 chromosome as a function of cell doubling time
    • Chandler M, Bird RE, Caro L. 1975. The replication time of the Escherichia coli K12 chromosome as a function of cell doubling time. J Mol Biol 94: 127-132.
    • (1975) J Mol Biol , vol.94 , pp. 127-132
    • Chandler, M.1    Bird, R.E.2    Caro, L.3
  • 8
    • 0033637212 scopus 로고    scopus 로고
    • Analysis of the Okazaki fragment distributions along single long DNAs replicated by the bacteriophage T4 proteins
    • Chastain PD II, Makhov AM, Nossal NG, Griffith J. 2000. Analysis of the Okazaki fragment distributions along single long DNAs replicated by the bacteriophage T4 proteins. Mol Cell 6: 803-814.
    • (2000) Mol Cell , vol.6 , pp. 803-814
    • Chastain II, P.D.1    Makhov, A.M.2    Nossal, N.G.3    Griffith, J.4
  • 9
    • 0038756406 scopus 로고    scopus 로고
    • Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins
    • Chastain PD II, Makhov AM, Nossal NG, Griffith J. 2003. Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins. J Biol Chem 278: 21276-21285.
    • (2003) J Biol Chem , vol.278 , pp. 21276-21285
    • Chastain II, P.D.1    Makhov, A.M.2    Nossal, N.G.3    Griffith, J.4
  • 10
    • 0033546210 scopus 로고    scopus 로고
    • The organization of replication and transcription
    • Cook PR. 1999. The organization of replication and transcription. Science 284: 1790-1795.
    • (1999) Science , vol.284 , pp. 1790-1795
    • Cook, P.R.1
  • 11
    • 33749119130 scopus 로고    scopus 로고
    • Regulation of bacterial priming and daughter strand synthesis through helicase-primase interactions
    • Corn JE, Berger JM. 2006. Regulation of bacterial priming and daughter strand synthesis through helicase-primase interactions. Nucleic Acids Res 34: 4082-4088.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4082-4088
    • Corn, J.E.1    Berger, J.M.2
  • 12
    • 27644594271 scopus 로고    scopus 로고
    • Crosstalk between primase subunits can act to regulate primer synthesis in trans
    • Corn JE, Pease PJ, Hura GL, Berger JM. 2005. Crosstalk between primase subunits can act to regulate primer synthesis in trans. Mol Cell 20: 391-401.
    • (2005) Mol Cell , vol.20 , pp. 391-401
    • Corn, J.E.1    Pease, P.J.2    Hura, G.L.3    Berger, J.M.4
  • 14
    • 77950346675 scopus 로고    scopus 로고
    • Analysis of replication factories in human cells by super-resolution light microscopy
    • Cseresnyes Z, Schwarz U, Green CM. 2009. Analysis of replication factories in human cells by super-resolution light microscopy. BMC Cell Biol 10: 88.
    • (2009) BMC Cell Biol , vol.10 , pp. 88
    • Cseresnyes, Z.1    Schwarz, U.2    Green, C.M.3
  • 15
    • 0028357737 scopus 로고
    • Coordination of leading and lagging strand DNA synthesis at the replication fork of bacteriophage T7
    • Debyser Z, Tabor S, Richardson CC. 1994. Coordination of leading and lagging strand DNA synthesis at the replication fork of bacteriophage T7. Cell 77: 157-166.
    • (1994) Cell , vol.77 , pp. 157-166
    • Debyser, Z.1    Tabor, S.2    Richardson, C.C.3
  • 17
    • 0015963865 scopus 로고
    • Bidirectional chromosome replication: Some topological considerations
    • DingmanCW. 1974. Bidirectional chromosome replication: Some topological considerations. J Theor Biol 43: 187-195.
    • (1974) J Theor Biol , vol.43 , pp. 187-195
    • Dingman, C.W.1
  • 18
    • 81055157596 scopus 로고    scopus 로고
    • The rate of polymerase release upon filling the gap between Okazaki fragments is inadequate to support cycling during lagging strand synthesis
    • Dohrmann PR, Manhart CM, Downey CD, McHenry CS. 2011. The rate of polymerase release upon filling the gap between Okazaki fragments is inadequate to support cycling during lagging strand synthesis. J Mol Biol 414: 15-27.
    • (2011) J Mol Biol , vol.414 , pp. 15-27
    • Dohrmann, P.R.1    Manhart, C.M.2    Downey, C.D.3    McHenry, C.S.4
  • 19
    • 64249120749 scopus 로고    scopus 로고
    • Replicon dynamics, dormant origin firing, and terminal fork integrity after double-strand break formation
    • Doksani Y, Bermejo R, Fiorani S, Haber JE, Foiani M. 2009. Replicon dynamics, dormant origin firing, and terminal fork integrity after double-strand break formation. Cell 137: 247-258.
    • (2009) Cell , vol.137 , pp. 247-258
    • Doksani, Y.1    Bermejo, R.2    Fiorani, S.3    Haber, J.E.4    Foiani, M.5
  • 21
    • 45849087274 scopus 로고    scopus 로고
    • AAA{thorn} ATPases in the initiation of DNA replication
    • Duderstadt KE, Berger JM. 2008. AAA{thorn} ATPases in the initiation of DNA replication. Crit Rev Biochem Mol Biol 43: 163-187.
    • (2008) Crit Rev Biochem Mol Biol , vol.43 , pp. 163-187
    • Duderstadt, K.E.1    Berger, J.M.2
  • 22
    • 55949118828 scopus 로고    scopus 로고
    • Chromosome replication dynamics in the archaeon Sulfolobus acidocaldarius
    • Duggin IG, McCallum SA, Bell SD. 2008. Chromosome replication dynamics in the archaeon Sulfolobus acidocaldarius. Proc Natl Acad Sci 105: 16737-16742.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 16737-16742
    • Duggin, I.G.1    McCallum, S.A.2    Bell, S.D.3
  • 24
    • 73949091058 scopus 로고    scopus 로고
    • A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication
    • Evrin C, Clarke P, Zech J, Lurz R, Sun J, Uhle S, Li H, Stillman B, Speck C. 2009. A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication. Proc Natl Acad Sci 106: 20240-20245.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 20240-20245
    • Evrin, C.1    Clarke, P.2    Zech, J.3    Lurz, R.4    Sun, J.5    Uhle, S.6    Li, H.7    Stillman, B.8    Speck, C.9
  • 26
    • 0033544908 scopus 로고    scopus 로고
    • Interaction of ribonucleoside triphosphates with the gene 4 primase of bacteriophage T7
    • Frick DN, Kumar S, Richardson CC. 1999. Interaction of ribonucleoside triphosphates with the gene 4 primase of bacteriophage T7. J Biol Chem 274: 35899-35907.
    • (1999) J Biol Chem , vol.274 , pp. 35899-35907
    • Frick, D.N.1    Kumar, S.2    Richardson, C.C.3
  • 27
    • 9144264274 scopus 로고    scopus 로고
    • Defining the position of the switches between replicative and bypassDNApolymerases
    • Fujii S, Fuchs RP. 2004. Defining the position of the switches between replicative and bypassDNApolymerases. EMBO J 23: 4342-4352.
    • (2004) EMBO J , vol.23 , pp. 4342-4352
    • Fujii, S.1    Fuchs, R.P.2
  • 29
    • 70350564160 scopus 로고    scopus 로고
    • Mechanism of polymerase collision release from sliding clamps on the lagging strand
    • Georgescu RE, Kurth I, Yao NY, Stewart J, Yurieva O, O'Donnell M. 2009. Mechanism of polymerase collision release from sliding clamps on the lagging strand. EMBO J 28: 2981-2991.
    • (2009) EMBO J , vol.28 , pp. 2981-2991
    • Georgescu, R.E.1    Kurth, I.2    Yao, N.Y.3    Stewart, J.4    Yurieva, O.5    O'Donnell, M.6
  • 30
    • 84855453503 scopus 로고    scopus 로고
    • Single-molecule studies reveal the function of a third polymerase in the replisome
    • Georgescu RE, Kurth I, O'Donnell ME. 2012. Single-molecule studies reveal the function of a third polymerase in the replisome. Nat Struct Mol Biol 19: 113-116.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 113-116
    • Georgescu, R.E.1    Kurth, I.2    O'Donnell, M.E.3
  • 31
    • 0028147234 scopus 로고
    • The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix: A model for polymerase release following the termination of each Okazaki fragment
    • Hacker KJ, Alberts BM. 1994. The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix: A model for polymerase release following the termination of each Okazaki fragment. J Biol Chem 269: 24221-24228.
    • (1994) J Biol Chem , vol.269 , pp. 24221-24228
    • Hacker, K.J.1    Alberts, B.M.2
  • 32
    • 58249114971 scopus 로고    scopus 로고
    • Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis
    • Hamdan SM, Loparo JJ, Takahashi M, Richardson CC, van Oijen AM. 2009. Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis. Nature 457: 336-339.
    • (2009) Nature , vol.457 , pp. 336-339
    • Hamdan, S.M.1    Loparo, J.J.2    Takahashi, M.3    Richardson, C.C.4    van Oijen, A.M.5
  • 33
    • 0032084507 scopus 로고    scopus 로고
    • A simple mechanism for the avoidance of entanglement during chromosome replication
    • Hearst JE, Kauffman L, McClainWM.1998. A simple mechanism for the avoidance of entanglement during chromosome replication. Trends Genet 14: 244-247.
    • (1998) Trends Genet , vol.14 , pp. 244-247
    • Hearst, J.E.1    Kauffman, L.2    McClain, W.M.3
  • 34
    • 31844456472 scopus 로고    scopus 로고
    • Replication fork reactivation downstream of a blocked nascent leading strand
    • Heller RC, Marians KJ. 2006. Replication fork reactivation downstream of a blocked nascent leading strand. Nature 439: 557-562.
    • (2006) Nature , vol.439 , pp. 557-562
    • Heller, R.C.1    Marians, K.J.2
  • 35
    • 65549153598 scopus 로고    scopus 로고
    • Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase
    • Indiani C, Langston LD, Yurieva O, Goodman MF, O'Donnell M. 2009. Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. Proc Natl Acad Sci U S A 106: 6031-6038.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 6031-6038
    • Indiani, C.1    Langston, L.D.2    Yurieva, O.3    Goodman, M.F.4    O'Donnell, M.5
  • 37
    • 34250766751 scopus 로고    scopus 로고
    • Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase
    • Johnson DS, Bai L, Smith BY, Patel SS, Wang MD. 2007. Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase. Cell 129: 1299-1309.
    • (2007) Cell , vol.129 , pp. 1299-1309
    • Johnson, D.S.1    Bai, L.2    Smith, B.Y.3    Patel, S.S.4    Wang, M.D.5
  • 38
    • 76949086750 scopus 로고    scopus 로고
    • Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC
    • Katayama T, Ozaki S, Keyamura K, Fujimitsu K. 2010. Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC. Nat RevMicrobiol 8: 163-170.
    • (2010) Nat RevMicrobiol , vol.8 , pp. 163-170
    • Katayama, T.1    Ozaki, S.2    Keyamura, K.3    Fujimitsu, K.4
  • 39
    • 3142732108 scopus 로고    scopus 로고
    • A molecular handoff between bacteriophage T7 DNA primase and T7 DNA polymerase initiates DNA synthesis
    • Kato M, Ito T, Wagner G, Ellenberger T. 2004. A molecular handoff between bacteriophage T7 DNA primase and T7 DNA polymerase initiates DNA synthesis. J Biol Chem 279: 30554-30562.
    • (2004) J Biol Chem , vol.279 , pp. 30554-30562
    • Kato, M.1    Ito, T.2    Wagner, G.3    Ellenberger, T.4
  • 40
    • 0029026635 scopus 로고
    • DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine
    • Kelman Z, O'Donnell M. 1995. DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine. Annu Rev Biochem 64: 171-200.
    • (1995) Annu Rev Biochem , vol.64 , pp. 171-200
    • Kelman, Z.1    O'Donnell, M.2
  • 41
    • 0037526104 scopus 로고    scopus 로고
    • Insights into ssDNA recognition by the OB fold from a structural and thermodynamic study of Sulfolobus SSB protein
    • Kerr ID, Wadsworth RI, Cubeddu L, Blankenfeldt W, Naismith JH, White MF. 2003. Insights into ssDNA recognition by the OB fold from a structural and thermodynamic study of Sulfolobus SSB protein. EMBO J 22: 2561-2570.
    • (2003) EMBO J , vol.22 , pp. 2561-2570
    • Kerr, I.D.1    Wadsworth, R.I.2    Cubeddu, L.3    Blankenfeldt, W.4    Naismith, J.H.5    White, M.F.6
  • 42
    • 0026724935 scopus 로고
    • Purification and characterization of the bacteriophage T7 gene 2.5 protein: A single-stranded DNA-binding protein
    • Kim YT, Tabor S, Bortner C, Griffith JD, Richardson CC. 1992. Purification and characterization of the bacteriophage T7 gene 2.5 protein: A single-stranded DNA-binding protein. J Biol Chem 267: 15022-15031.
    • (1992) J Biol Chem , vol.267 , pp. 15022-15031
    • Kim, Y.T.1    Tabor, S.2    Bortner, C.3    Griffith, J.D.4    Richardson, C.C.5
  • 43
    • 33745239698 scopus 로고    scopus 로고
    • Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories
    • Kitamura E, Blow JJ, Tanaka TU. 2006. Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories. Cell 125: 1297-1308.
    • (2006) Cell , vol.125 , pp. 1297-1308
    • Kitamura, E.1    Blow, J.J.2    Tanaka, T.U.3
  • 45
    • 77949570959 scopus 로고    scopus 로고
    • Mechanism and evolution of DNA primases
    • Kuchta RD, Stengel G. 2010. Mechanism and evolution of DNA primases. Biochim Biophys Acta 1804: 1180-1189.
    • (2010) Biochim Biophys Acta , vol.1804 , pp. 1180-1189
    • Kuchta, R.D.1    Stengel, G.2
  • 46
    • 33749354956 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae replication protein A binds to single-stranded DNA in multiple salt-dependent modes
    • Kumaran S, Kozlov AG, Lohman TM. 2006. Saccharomyces cerevisiae replication protein A binds to single-stranded DNA in multiple salt-dependent modes. Biochemistry 45: 11958-11973.
    • (2006) Biochemistry , vol.45 , pp. 11958-11973
    • Kumaran, S.1    Kozlov, A.G.2    Lohman, T.M.3
  • 47
    • 0031040805 scopus 로고    scopus 로고
    • Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7
    • Kusakabe T, Richardson CC. 1997. Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7. J Biol Chem 272: 5943-5951.
    • (1997) J Biol Chem , vol.272 , pp. 5943-5951
    • Kusakabe, T.1    Richardson, C.C.2
  • 48
    • 69749124647 scopus 로고    scopus 로고
    • Whither the replisome: Emerging perspectives on the dynamic nature of the DNA replication machinery
    • Langston LD, Indiani C, O'Donnell M. 2009. Whither the replisome: Emerging perspectives on the dynamic nature of the DNA replication machinery. Cell Cycle 8: 2686-2691.
    • (2009) Cell Cycle , vol.8 , pp. 2686-2691
    • Langston, L.D.1    Indiani, C.2    O'Donnell, M.3
  • 49
    • 0036792083 scopus 로고    scopus 로고
    • Interaction of adjacent primase domains within the hexameric gene 4 helicase-primase of bacteriophage T7
    • Lee SJ, Richardson CC. 2002. Interaction of adjacent primase domains within the hexameric gene 4 helicase-primase of bacteriophage T7. Proc Natl Acad Sci 99: 12703-12708.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 12703-12708
    • Lee, S.J.1    Richardson, C.C.2
  • 50
    • 0036303514 scopus 로고    scopus 로고
    • Lagging strand synthesis in coordinated DNA synthesis by bacteriophage T7 replication proteins
    • Lee J, Chastain PD II, Griffith JD, Richardson CC. 2002. Lagging strand synthesis in coordinated DNA synthesis by bacteriophage T7 replication proteins. J Mol Biol 316: 19-34.
    • (2002) J Mol Biol , vol.316 , pp. 19-34
    • Lee, J.1    Chastain II, P.D.2    Griffith, J.D.3    Richardson, C.C.4
  • 52
    • 0032553470 scopus 로고    scopus 로고
    • Localization of bacterial DNA polymerase: Evidence for a factory model of replication
    • Lemon KP, Grossman AD. 1998. Localization of bacterial DNA polymerase: Evidence for a factory model of replication. Science 282: 1516-1519.
    • (1998) Science , vol.282 , pp. 1516-1519
    • Lemon, K.P.1    Grossman, A.D.2
  • 53
    • 0034509678 scopus 로고    scopus 로고
    • Movement of replicating DNA through a stationary replisome
    • Lemon KP, Grossman AD. 2000. Movement of replicating DNA through a stationary replisome. Mol Cell 6: 1321-1330.
    • (2000) Mol Cell , vol.6 , pp. 1321-1330
    • Lemon, K.P.1    Grossman, A.D.2
  • 54
    • 0034602402 scopus 로고    scopus 로고
    • Two distinct triggers for cycling of the lagging strand polymerase at the replication fork
    • Li X, Marians KJ. 2000. Two distinct triggers for cycling of the lagging strand polymerase at the replication fork. J Biol Chem 275: 34757-34765.
    • (2000) J Biol Chem , vol.275 , pp. 34757-34765
    • Li, X.1    Marians, K.J.2
  • 55
    • 79960630264 scopus 로고    scopus 로고
    • Central dogma at the single-molecule level in living cells
    • Li GW, Xie XS. 2011. Central dogma at the single-molecule level in living cells. Nature 475: 308-315.
    • (2011) Nature , vol.475 , pp. 308-315
    • Li, G.W.1    Xie, X.S.2
  • 56
    • 84856072129 scopus 로고    scopus 로고
    • Polymerase exchange during Okazaki fragment synthesis observed in living cells
    • Lia G, Michel B, Allemand JF. 2012. Polymerase exchange during Okazaki fragment synthesis observed in living cells. Science 335: 328-331.
    • (2012) Science , vol.335 , pp. 328-331
    • Lia, G.1    Michel, B.2    Allemand, J.F.3
  • 57
    • 77953208022 scopus 로고    scopus 로고
    • A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
    • Liachko I, Bhaskar A, Lee C, Chung SC, Tye BK, Keich U. 2010. A comprehensive genome-wide map of autonomously replicating sequences in a naive genome. PLoS Genet 6: e1000946.
    • (2010) PLoS Genet , vol.6
    • Liachko, I.1    Bhaskar, A.2    Lee, C.3    Chung, S.C.4    Tye, B.K.5    Keich, U.6
  • 58
    • 38049186506 scopus 로고    scopus 로고
    • Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism
    • Lionnet T, Spiering MM, Benkovic SJ, Bensimon D, Croquette V. 2007. Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism. Proc Natl Acad Sci 104: 19790-19795.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 19790-19795
    • Lionnet, T.1    Spiering, M.M.2    Benkovic, S.J.3    Bensimon, D.4    Croquette, V.5
  • 60
    • 79952746781 scopus 로고    scopus 로고
    • Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange
    • Loparo JJ, Kulczyk AW, Richardson CC, van Oijen AM. 2011. Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange. Proc Natl Acad Sci 108: 3584-3589.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 3584-3589
    • Loparo, J.J.1    Kulczyk, A.W.2    Richardson, C.C.3    van Oijen, A.M.4
  • 61
    • 29544437558 scopus 로고    scopus 로고
    • Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions
    • Lopes M, Foiani M, Sogo JM. 2006. Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions. Mol Cell 21: 15-27.
    • (2006) Mol Cell , vol.21 , pp. 15-27
    • Lopes, M.1    Foiani, M.2    Sogo, J.M.3
  • 63
    • 34547864244 scopus 로고    scopus 로고
    • Singlemolecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase
    • Luo G, Wang M, Konigsberg WH, Xie XS. 2007. Singlemolecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase. Proc Natl Acad Sci 104: 12610-12615.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 12610-12615
    • Luo, G.1    Wang, M.2    Konigsberg, W.H.3    Xie, X.S.4
  • 64
    • 0034723152 scopus 로고    scopus 로고
    • DNA polymerase switching: I. Replication factor C displaces DNA polymerase alpha prior to PCNA loading
    • Maga G, Stucki M, Spadari S, Hubscher U. 2000. DNA polymerase switching: I. Replication factor C displaces DNA polymerase alpha prior to PCNA loading. J Mol Biol 295: 791-801.
    • (2000) J Mol Biol , vol.295 , pp. 791-801
    • Maga, G.1    Stucki, M.2    Spadari, S.3    Hubscher, U.4
  • 65
    • 0034710990 scopus 로고    scopus 로고
    • Replication by a single DNA polymerase of a stretched single-stranded DNA
    • Maier B, Bensimon D, Croquette V. 2000. Replication by a single DNA polymerase of a stretched single-stranded DNA. Proc Natl Acad Sci 97: 12002-12007.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 12002-12007
    • Maier, B.1    Bensimon, D.2    Croquette, V.3
  • 66
    • 72449179248 scopus 로고    scopus 로고
    • Coupling DNA unwinding activity with primer synthesis in the bacteriophage T4 primosome
    • Manosas M, Spiering MM, Zhuang Z, Benkovic SJ, Croquette V. 2009. Coupling DNA unwinding activity with primer synthesis in the bacteriophage T4 primosome. Nat Chem Biol 5: 904-912.
    • (2009) Nat Chem Biol , vol.5 , pp. 904-912
    • Manosas, M.1    Spiering, M.M.2    Zhuang, Z.3    Benkovic, S.J.4    Croquette, V.5
  • 70
    • 0037295722 scopus 로고    scopus 로고
    • Identification of short "eukaryotic" Okazaki fragments synthesized from a prokaryotic replication origin
    • Matsunaga F, Norais C, Forterre P, Myllykallio H. 2003. Identification of short "eukaryotic" Okazaki fragments synthesized from a prokaryotic replication origin. EMBO Rep 4: 154-158.
    • (2003) EMBO Rep , vol.4 , pp. 154-158
    • Matsunaga, F.1    Norais, C.2    Forterre, P.3    Myllykallio, H.4
  • 71
    • 77957168933 scopus 로고    scopus 로고
    • Eukaryotic DNA replication origins: Many choices for appropriate answers
    • Méchali M. 2010. Eukaryotic DNA replication origins: Many choices for appropriate answers. Nat Rev Mol Cell Biol 11: 728-738.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 728-738
    • Méchali, M.1
  • 72
    • 34247271405 scopus 로고    scopus 로고
    • DNA replication initiation: Mechanisms and regulation in bacteria
    • Mott ML, Berger JM. 2007. DNA replication initiation: Mechanisms and regulation in bacteria. Nat Rev Microbiol 5: 343-354.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 343-354
    • Mott, M.L.1    Berger, J.M.2
  • 74
    • 29144461520 scopus 로고    scopus 로고
    • Plasmid R1-replication and its control
    • Nordstrom K. 2006. Plasmid R1-replication and its control. Plasmid 55: 1-26.
    • (2006) Plasmid , vol.55 , pp. 1-26
    • Nordstrom, K.1
  • 75
    • 72449204579 scopus 로고    scopus 로고
    • Coordinating DNA replication by means of priming loop and differential synthesis rate
    • Pandey M, Syed S, Donmez I, Patel G, Ha T, Patel SS. 2009. Coordinating DNA replication by means of priming loop and differential synthesis rate. Nature 462: 940-943.
    • (2009) Nature , vol.462 , pp. 940-943
    • Pandey, M.1    Syed, S.2    Donmez, I.3    Patel, G.4    Ha, T.5    Patel, S.S.6
  • 76
    • 0032570821 scopus 로고    scopus 로고
    • Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins
    • Park K, Debyser Z, Tabor S, Richardson CC, Griffith JD. 1998. Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins. J Biol Chem 273: 5260-5270.
    • (1998) J Biol Chem , vol.273 , pp. 5260-5270
    • Park, K.1    Debyser, Z.2    Tabor, S.3    Richardson, C.C.4    Griffith, J.D.5
  • 78
    • 57649129186 scopus 로고    scopus 로고
    • The replisome uses mRNA as a primer after colliding with RNA polymerase
    • Pomerantz RT, O'Donnell M. 2008. The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature 456: 762-766.
    • (2008) Nature , vol.456 , pp. 762-766
    • Pomerantz, R.T.1    O'Donnell, M.2
  • 79
    • 33646759589 scopus 로고    scopus 로고
    • Primer initiation and extension by T7 DNA primase
    • Qimron U, Lee SJ, Hamdan SM, Richardson CC. 2006. Primer initiation and extension by T7 DNA primase. EMBO J 25: 2199-2208.
    • (2006) EMBO J , vol.25 , pp. 2199-2208
    • Qimron, U.1    Lee, S.J.2    Hamdan, S.M.3    Richardson, C.C.4
  • 80
    • 0025166416 scopus 로고
    • In vivo analysis of the initiation of bacteriophage T7 DNA replication
    • Rabkin SD, Richardson CC. 1990. In vivo analysis of the initiation of bacteriophage T7 DNA replication. Virology 174: 585-592.
    • (1990) Virology , vol.174 , pp. 585-592
    • Rabkin, S.D.1    Richardson, C.C.2
  • 82
    • 70350751416 scopus 로고    scopus 로고
    • Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing
    • Remus D, Beuron F, Tolun G, Griffith JD, Morris EP, Diffley JF. 2009. Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing. Cell 139: 719-730.
    • (2009) Cell , vol.139 , pp. 719-730
    • Remus, D.1    Beuron, F.2    Tolun, G.3    Griffith, J.D.4    Morris, E.P.5    Diffley, J.F.6
  • 83
    • 41149121779 scopus 로고    scopus 로고
    • Independent positioning and action of Escherichia coli replisomes in live cells
    • Reyes-Lamothe R, Possoz C, Danilova O, Sherratt DJ. 2008. Independent positioning and action of Escherichia coli replisomes in live cells. Cell 133: 90-102.
    • (2008) Cell , vol.133 , pp. 90-102
    • Reyes-Lamothe, R.1    Possoz, C.2    Danilova, O.3    Sherratt, D.J.4
  • 84
    • 77951537332 scopus 로고    scopus 로고
    • Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
    • Reyes-Lamothe R, Sherratt DJ, Leake MC. 2010. Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 328: 498-501.
    • (2010) Science , vol.328 , pp. 498-501
    • Reyes-Lamothe, R.1    Sherratt, D.J.2    Leake, M.C.3
  • 85
    • 54749117023 scopus 로고    scopus 로고
    • Multiplexed single-molecule measurements with magnetic tweezers
    • Ribeck N, Saleh OA. 2008. Multiplexed single-molecule measurements with magnetic tweezers. Rev Sci Instrum 79: 094301.
    • (2008) Rev Sci Instrum , vol.79 , pp. 094301
    • Ribeck, N.1    Saleh, O.A.2
  • 86
    • 33745625118 scopus 로고    scopus 로고
    • Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation
    • Smiley RD, Zhuang Z, Benkovic SJ, Hammes GG. 2006. Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation. Biochemistry 45: 7990-7997.
    • (2006) Biochemistry , vol.45 , pp. 7990-7997
    • Smiley, R.D.1    Zhuang, Z.2    Benkovic, S.J.3    Hammes, G.G.4
  • 87
    • 84862776917 scopus 로고    scopus 로고
    • Intrinsic coupling of laggingstrand synthesis to chromatin assembly
    • Smith DJ, Whitehouse I. 2012. Intrinsic coupling of laggingstrand synthesis to chromatin assembly. Nature 483: 434-438.
    • (2012) Nature , vol.483 , pp. 434-438
    • Smith, D.J.1    Whitehouse, I.2
  • 88
    • 18244402378 scopus 로고    scopus 로고
    • High mobility of flap endonuclease 1 and DNA polymerase eta associated with replication foci in mammalian S-phase nucleus
    • Solovjeva L, Svetlova M, Sasina L, Tanaka K, Saijo M, Nazarov I, Bradbury M., 2005. High mobility of flap endonuclease 1 and DNA polymerase eta associated with replication foci in mammalian S-phase nucleus. Mol Biol Cell 16: 2518-2528.
    • (2005) Mol Biol Cell , vol.16 , pp. 2518-2528
    • Solovjeva, L.1    Svetlova, M.2    Sasina, L.3    Tanaka, K.4    Saijo, M.5    Nazarov, I.6    Bradbury, M.7
  • 89
    • 0036929125 scopus 로고    scopus 로고
    • DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters
    • Sporbert A, Gahl A, Ankerhold R, Leonhardt H, Cardoso MC. 2002. DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters. Mol Cell 10: 1355-1365.
    • (2002) Mol Cell , vol.10 , pp. 1355-1365
    • Sporbert, A.1    Gahl, A.2    Ankerhold, R.3    Leonhardt, H.4    Cardoso, M.C.5
  • 90
    • 79952682341 scopus 로고    scopus 로고
    • The replicase sliding clamp dynamically accumulates behind progressing replication forks in Bacillus subtilis cells
    • Su'etsugu M, Errington J. 2011. The replicase sliding clamp dynamically accumulates behind progressing replication forks in Bacillus subtilis cells. Mol Cell 41: 720-732.
    • (2011) Mol Cell , vol.41 , pp. 720-732
    • Su'etsugu, M.1    Errington, J.2
  • 93
    • 68349146847 scopus 로고    scopus 로고
    • Single-molecule observation of prokaryotic DNA replication
    • Tanner NA, van Oijen AM. 2009. Single-molecule observation of prokaryotic DNA replication. Methods Mol Biol 521: 397-410.
    • (2009) Methods Mol Biol , vol.521 , pp. 397-410
    • Tanner, N.A.1    van Oijen, A.M.2
  • 97
    • 38749118235 scopus 로고    scopus 로고
    • Highly inclined thin illumination enables clear single-molecule imaging in cells
    • Tokunaga M, Imamoto N, Sakata-Sogawa K. 2008. Highly inclined thin illumination enables clear single-molecule imaging in cells. Nat Methods 5: 159-161.
    • (2008) Nat Methods , vol.5 , pp. 159-161
    • Tokunaga, M.1    Imamoto, N.2    Sakata-Sogawa, K.3
  • 98
    • 0029788209 scopus 로고    scopus 로고
    • The interaction between helicase and primase sets the replication fork clock
    • Tougu K, Marians KJ. 1996. The interaction between helicase and primase sets the replication fork clock. J Biol Chem 271: 21398-21405.
    • (1996) J Biol Chem , vol.271 , pp. 21398-21405
    • Tougu, K.1    Marians, K.J.2
  • 99
    • 0033988190 scopus 로고    scopus 로고
    • Large T-antigen double hexamers imaged at the simian virus 40 origin of replication
    • Valle M, Gruss C, Halmer L, Carazo JM, Donate LE. 2000. Large T-antigen double hexamers imaged at the simian virus 40 origin of replication. Mol Cell Biol 20: 34-41.
    • (2000) Mol Cell Biol , vol.20 , pp. 34-41
    • Valle, M.1    Gruss, C.2    Halmer, L.3    Carazo, J.M.4    Donate, L.E.5
  • 101
    • 0031663505 scopus 로고    scopus 로고
    • The DNA replication fork in eukaryotic cells
    • Waga S, Stillman B. 1998. The DNA replication fork in eukaryotic cells. Annu Rev Biochem 67: 721-751.
    • (1998) Annu Rev Biochem , vol.67 , pp. 721-751
    • Waga, S.1    Stillman, B.2
  • 102
    • 34248394295 scopus 로고    scopus 로고
    • Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
    • Wang JD, Berkmen MB, Grossman AD. 2007. Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc Natl Acad Sci 104: 5608-5613.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 5608-5613
    • Wang, J.D.1    Berkmen, M.B.2    Grossman, A.D.3
  • 103
    • 51149119105 scopus 로고    scopus 로고
    • Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV
    • Wang X, Reyes-Lamothe R, Sherratt DJ. 2008. Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV. Genes Dev 22: 2426-2433.
    • (2008) Genes Dev , vol.22 , pp. 2426-2433
    • Wang, X.1    Reyes-Lamothe, R.2    Sherratt, D.J.3
  • 104
    • 0032978966 scopus 로고    scopus 로고
    • Two regions of simian virus 40 Tantigen determine cooperativity of double-hexamer assembly on the viral origin ofDNA replication and promote hexamer interactions during bidirectional originDNAunwinding
    • Weisshart K, Taneja P, Jenne A, Herbig U, Simmons DT, Fanning E. 1999. Two regions of simian virus 40 Tantigen determine cooperativity of double-hexamer assembly on the viral origin ofDNA replication and promote hexamer interactions during bidirectional originDNAunwinding. J Virol 73: 2201-2211.
    • (1999) J Virol , vol.73 , pp. 2201-2211
    • Weisshart, K.1    Taneja, P.2    Jenne, A.3    Herbig, U.4    Simmons, D.T.5    Fanning, E.6
  • 105
    • 0034594940 scopus 로고    scopus 로고
    • Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
    • Wuite GJ, Smith SB, Young M, Keller D, Bustamante C. 2000. Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature 404: 103-106.
    • (2000) Nature , vol.404 , pp. 103-106
    • Wuite, G.J.1    Smith, S.B.2    Young, M.3    Keller, D.4    Bustamante, C.5
  • 106
    • 19644375053 scopus 로고    scopus 로고
    • Interaction between the T4 helicase loading protein (gp59) and the DNA polymerase (gp43): Unlocking of the gp59-gp43-DNA complex to initiate assembly of a fully functional replisome
    • Xi J, Zhang Z, Zhuang Z, Yang J, SpieringMM, Hammes GG, Benkovic SJ. 2005a. Interaction between the T4 helicase loading protein (gp59) and the DNA polymerase (gp43): Unlocking of the gp59-gp43-DNA complex to initiate assembly of a fully functional replisome. Biochemistry 44: 7747-7756.
    • (2005) Biochemistry , vol.44 , pp. 7747-7756
    • Xi, J.1    Zhang, Z.2    Zhuang, Z.3    Yang, J.4    Spiering, M.M.5    Hammes, G.G.6    Benkovic, S.J.7
  • 107
    • 14044254854 scopus 로고    scopus 로고
    • Interaction between the T4 helicase-loading protein (gp59) and the DNA polymerase (gp43): A locking mechanism to delay replication during replisome assembly (erratum Biochemistry [2005] 44: 12264; 44: 4600)
    • Xi J, Zhuang Z, Zhang Z, Selzer T, Spiering MM, Hammes GG, Benkovic SJ. 2005b. Interaction between the T4 helicase-loading protein (gp59) and the DNA polymerase (gp43): A locking mechanism to delay replication during replisome assembly (erratum Biochemistry [2005] 44: 12264; 44: 4600). Biochemistry 44: 2305-2318.
    • (2005) Biochemistry , vol.44 , pp. 2305-2318
    • Xi, J.1    Zhuang, Z.2    Zhang, Z.3    Selzer, T.4    Spiering, M.M.5    Hammes, G.G.6    Benkovic, S.J.7
  • 108
    • 48249095613 scopus 로고    scopus 로고
    • Singlemolecule approach to molecular biology in living bacterial cells
    • Xie XS, Choi PJ, Li GW, Lee NK, Lia G. 2008. Singlemolecule approach to molecular biology in living bacterial cells. Annu Rev Biophys 37: 417-444.
    • (2008) Annu Rev Biophys , vol.37 , pp. 417-444
    • Xie, X.S.1    Choi, P.J.2    Li, G.W.3    Lee, N.K.4    Lia, G.5
  • 109
    • 30744446944 scopus 로고    scopus 로고
    • The control mechanism for lagging strand polymerase recycling during bacteriophage T4 DNA replication
    • Yang J, Nelson SW, Benkovic SJ. 2006. The control mechanism for lagging strand polymerase recycling during bacteriophage T4 DNA replication. Mol Cell 21: 153-164.
    • (2006) Mol Cell , vol.21 , pp. 153-164
    • Yang, J.1    Nelson, S.W.2    Benkovic, S.J.3
  • 110
    • 77953710831 scopus 로고    scopus 로고
    • SnapShot: The replisome
    • Yao NY, O'Donnell M. 2010. SnapShot: The replisome. Cell 141: 1088.
    • (2010) Cell , vol.141 , pp. 1088
    • Yao, N.Y.1    O'Donnell, M.2
  • 111
    • 69449095740 scopus 로고    scopus 로고
    • Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression
    • Yao NY, Georgescu RE, Finkelstein J, O'Donnell ME. 2009. Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression. Proc Natl Acad Sci 106: 13236-13241.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 13236-13241
    • Yao, N.Y.1    Georgescu, R.E.2    Finkelstein, J.3    O'Donnell, M.E.4
  • 113
    • 80054091679 scopus 로고    scopus 로고
    • The Escherichia coli replisome is inherently DNA damage tolerant
    • Yeeles JT, Marians KJ. 2011. The Escherichia coli replisome is inherently DNA damage tolerant. Science 334: 235-238.
    • (2011) Science , vol.334 , pp. 235-238
    • Yeeles, J.T.1    Marians, K.J.2
  • 114
    • 0033230401 scopus 로고    scopus 로고
    • Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme
    • Yuzhakov A, Kelman Z, Hurwitz J, O'Donnell M. 1999a. Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme. EMBO J 18: 6189-6199.
    • (1999) EMBO J , vol.18 , pp. 6189-6199
    • Yuzhakov, A.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4
  • 115
    • 0033534380 scopus 로고    scopus 로고
    • Trading places on DNA-athree-point switch underlies primer handoff from primase to the replicative DNA polymerase
    • Yuzhakov A, Kelman Z, O'Donnell M. 1999b. Trading places on DNA-athree-point switch underlies primer handoff from primase to the replicative DNA polymerase. Cell 96: 153-163.
    • (1999) Cell , vol.96 , pp. 153-163
    • Yuzhakov, A.1    Kelman, Z.2    O'Donnell, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.