-
1
-
-
0032750433
-
Chemical biotechnology industrial applications and recent advances - invited overview
-
Petersen M. Chemical biotechnology industrial applications and recent advances - invited overview. Curr Opin Biotechnol 1999, 10:593-594.
-
(1999)
Curr Opin Biotechnol
, vol.10
, pp. 593-594
-
-
Petersen, M.1
-
2
-
-
84860741240
-
Engineering the third wave of biocatalysis
-
Bornscheuer U.T., Huisman G.W., Kazlauskas R.J., Lutz S., Moore J.C., Robins K. Engineering the third wave of biocatalysis. Nature 2012, 485:185-194.
-
(2012)
Nature
, vol.485
, pp. 185-194
-
-
Bornscheuer, U.T.1
Huisman, G.W.2
Kazlauskas, R.J.3
Lutz, S.4
Moore, J.C.5
Robins, K.6
-
3
-
-
79961179947
-
Synergies between synthetic biology and metabolic engineering
-
Nielsen J., Keasling J.D. Synergies between synthetic biology and metabolic engineering. Nat Biotechnol 2011, 29:693-695.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 693-695
-
-
Nielsen, J.1
Keasling, J.D.2
-
4
-
-
84862817382
-
Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae
-
Sun J., Shao Z., Zhao H., Nair N., Wen F., Xu J.H. Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae. Biotechnol Bioeng 2012, 109:2082-2092.
-
(2012)
Biotechnol Bioeng
, vol.109
, pp. 2082-2092
-
-
Sun, J.1
Shao, Z.2
Zhao, H.3
Nair, N.4
Wen, F.5
Xu, J.H.6
-
5
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla G., Murray A.W., Tollervey D., Plotkin J.B. Coding-sequence determinants of gene expression in Escherichia coli. Science 2009, 324:255-258.
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
6
-
-
79957518680
-
Designing genes for successful protein expression
-
Welch M., Villalobos A., Gustafsson C., Minshull J. Designing genes for successful protein expression. Methods Enzymol 2011, 498:43-66.
-
(2011)
Methods Enzymol
, vol.498
, pp. 43-66
-
-
Welch, M.1
Villalobos, A.2
Gustafsson, C.3
Minshull, J.4
-
7
-
-
79951565301
-
Design, construction and characterization of a set of insulated bacterial promoters
-
Davis J.H., Rubin A.J., Sauer R.T. Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Res 2011, 39:1131-1141.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1131-1141
-
-
Davis, J.H.1
Rubin, A.J.2
Sauer, R.T.3
-
8
-
-
84867389802
-
RNA processing enables predictable programming of gene expression
-
Qi L., Haurwitz R.E., Shao W., Doudna J.A., Arkin A.P. RNA processing enables predictable programming of gene expression. Nat Biotechnol 2012, 30:1002-1006.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 1002-1006
-
-
Qi, L.1
Haurwitz, R.E.2
Shao, W.3
Doudna, J.A.4
Arkin, A.P.5
-
9
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis H.M., Mirsky E.A., Voigt C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 2009, 27:946-950.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
10
-
-
79952348850
-
A synthetic library of RNA control modules for predictable tuning of gene expression in yeast
-
Babiskin A.H., Smolke C.D. A synthetic library of RNA control modules for predictable tuning of gene expression in yeast. Mol Syst Biol 2011, 7:471.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 471
-
-
Babiskin, A.H.1
Smolke, C.D.2
-
11
-
-
79960697001
-
Organization of intracellular reactions with rationally designed RNA assemblies
-
Delebecque C.J., Lindner A.B., Silver P.A., Aldaye F.A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 2011, 333:470-474.
-
(2011)
Science
, vol.333
, pp. 470-474
-
-
Delebecque, C.J.1
Lindner, A.B.2
Silver, P.A.3
Aldaye, F.A.4
-
12
-
-
84863229940
-
DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency
-
Conrado R.J., Wu G.C., Boock J.T., Xu H., Chen S.Y., Lebar T., Turnsek J., Tomsic N., Avbelj M., Gaber R., et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic Acids Res 2012, 40:1879-1889.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1879-1889
-
-
Conrado, R.J.1
Wu, G.C.2
Boock, J.T.3
Xu, H.4
Chen, S.Y.5
Lebar, T.6
Turnsek, J.7
Tomsic, N.8
Avbelj, M.9
Gaber, R.10
-
13
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic flux
-
Dueber J.E., Wu G.C., Malmirchegini G.R., Moon T.S., Petzold C.J., Ullal A.V., Prather K.L., Keasling J.D. Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol 2009, 27:753-759.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 753-759
-
-
Dueber, J.E.1
Wu, G.C.2
Malmirchegini, G.R.3
Moon, T.S.4
Petzold, C.J.5
Ullal, A.V.6
Prather, K.L.7
Keasling, J.D.8
-
14
-
-
79551478567
-
Diversion of flux toward sesquiterpene production in Saccharomyces cerevisiae by fusion of host and heterologous enzymes
-
Albertsen L., Chen Y., Bach L.S., Rattleff S., Maury J., Brix S., Nielsen J., Mortensen U.H. Diversion of flux toward sesquiterpene production in Saccharomyces cerevisiae by fusion of host and heterologous enzymes. Appl Environ Microbiol 2011, 77:1033-1040.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1033-1040
-
-
Albertsen, L.1
Chen, Y.2
Bach, L.S.3
Rattleff, S.4
Maury, J.5
Brix, S.6
Nielsen, J.7
Mortensen, U.H.8
-
15
-
-
84864080129
-
Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome
-
Sun J., Wen F., Si T., Xu J.H., Zhao H. Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome. Appl Environ Microbiol 2012, 78:3837-3845.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3837-3845
-
-
Sun, J.1
Wen, F.2
Si, T.3
Xu, J.H.4
Zhao, H.5
-
16
-
-
80052030821
-
Harnessing yeast subcellular compartments for the production of plant terpenoids
-
Farhi M., Marhevka E., Masci T., Marcos E., Eyal Y., Ovadis M., Abeliovich H., Vainstein A. Harnessing yeast subcellular compartments for the production of plant terpenoids. Metab Eng 2011, 13:474-481.
-
(2011)
Metab Eng
, vol.13
, pp. 474-481
-
-
Farhi, M.1
Marhevka, E.2
Masci, T.3
Marcos, E.4
Eyal, Y.5
Ovadis, M.6
Abeliovich, H.7
Vainstein, A.8
-
17
-
-
59649108349
-
DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
-
Shao Z., Zhao H. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 2009, 37:e16.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Shao, Z.1
Zhao, H.2
-
18
-
-
80053064386
-
Reiterative recombination for the in vivo assembly of libraries of multigene pathways
-
Wingler L.M., Cornish V.W. Reiterative recombination for the in vivo assembly of libraries of multigene pathways. Proc Natl Acad Sci U S A 2011, 108:15135-15140.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15135-15140
-
-
Wingler, L.M.1
Cornish, V.W.2
-
19
-
-
77953584054
-
Creation of a bacterial cell controlled by a chemically synthesized genome
-
Gibson D.G., Glass J.I., Lartigue C., Noskov V.N., Chuang R.Y., Algire M.A., Benders G.A., Montague M.G., Ma L., Moodie M.M., et al. Creation of a bacterial cell controlled by a chemically synthesized genome. Science 2010, 329:52-56.
-
(2010)
Science
, vol.329
, pp. 52-56
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
-
20
-
-
80053132391
-
Synthetic chromosome arms function in yeast and generate phenotypic diversity by design
-
Dymond J.S., Richardson S.M., Coombes C.E., Babatz T., Muller H., Annaluru N., Blake W.J., Schwerzmann J.W., Dai J., Lindstrom D.L., et al. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature 2011, 477:471-476.
-
(2011)
Nature
, vol.477
, pp. 471-476
-
-
Dymond, J.S.1
Richardson, S.M.2
Coombes, C.E.3
Babatz, T.4
Muller, H.5
Annaluru, N.6
Blake, W.J.7
Schwerzmann, J.W.8
Dai, J.9
Lindstrom, D.L.10
-
21
-
-
84860778298
-
Full-length RecE enhances linear-linear homologous recombination and facilitates direct cloning for bioprospecting
-
Fu J., Bian X., Hu S., Wang H., Huang F., Seibert P.M., Plaza A., Xia L., Muller R., Stewart A.F., et al. Full-length RecE enhances linear-linear homologous recombination and facilitates direct cloning for bioprospecting. Nat Biotechnol 2012, 30:440-446.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 440-446
-
-
Fu, J.1
Bian, X.2
Hu, S.3
Wang, H.4
Huang, F.5
Seibert, P.M.6
Plaza, A.7
Xia, L.8
Muller, R.9
Stewart, A.F.10
-
22
-
-
75549090505
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R., Altman T., Dale J.M., Dreher K., Fulcher C.A., Gilham F., Kaipa P., Karthikeyan A.S., Kothari A., Krummenacker M., et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 2010, 38:D473-D479.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Caspi, R.1
Altman, T.2
Dale, J.M.3
Dreher, K.4
Fulcher, C.A.5
Gilham, F.6
Kaipa, P.7
Karthikeyan, A.S.8
Kothari, A.9
Krummenacker, M.10
-
23
-
-
84555188306
-
The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals
-
Kotera M., Hirakawa M., Tokimatsu T., Goto S., Kanehisa M. The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals. Methods Mol Biol 2012, 802:19-39.
-
(2012)
Methods Mol Biol
, vol.802
, pp. 19-39
-
-
Kotera, M.1
Hirakawa, M.2
Tokimatsu, T.3
Goto, S.4
Kanehisa, M.5
-
24
-
-
84862220951
-
Rhea - a manually curated resource of biochemical reactions
-
Alcantara R., Axelsen K.B., Morgat A., Belda E., Coudert E., Bridge A., Cao H., de Matos P., Ennis M., Turner S., et al. Rhea - a manually curated resource of biochemical reactions. Nucleic Acids Res 2012, 40:D754-D760.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Alcantara, R.1
Axelsen, K.B.2
Morgat, A.3
Belda, E.4
Coudert, E.5
Bridge, A.6
Cao, H.7
de Matos, P.8
Ennis, M.9
Turner, S.10
-
25
-
-
78651330012
-
BRENDA, the enzyme information system in 2011
-
Scheer M., Grote A., Chang A., Schomburg I., Munaretto C., Rother M., Sohngen C., Stelzer M., Thiele J., Schomburg D. BRENDA, the enzyme information system in 2011. Nucleic Acids Res 2011, 39:D670-D676.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Scheer, M.1
Grote, A.2
Chang, A.3
Schomburg, I.4
Munaretto, C.5
Rother, M.6
Sohngen, C.7
Stelzer, M.8
Thiele, J.9
Schomburg, D.10
-
26
-
-
84870256513
-
Global probabilistic annotation of metabolic networks enables enzyme discovery
-
Plata G., Fuhrer T., Hsiao T.L., Sauer U., Vitkup D. Global probabilistic annotation of metabolic networks enables enzyme discovery. Nat Chem Biol 2012, 8:848-854.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 848-854
-
-
Plata, G.1
Fuhrer, T.2
Hsiao, T.L.3
Sauer, U.4
Vitkup, D.5
-
27
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist A.M., Herrgard M.J., Thiele I., Reed J.L., Palsson B.O. Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 2009, 7:129-143.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.O.5
-
28
-
-
84857192122
-
Computational tools for the synthetic design of biochemical pathways
-
Medema M.H., van Raaphorst R., Takano E., Breitling R. Computational tools for the synthetic design of biochemical pathways. Nat Rev Microbiol 2012, 10:191-202.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 191-202
-
-
Medema, M.H.1
van Raaphorst, R.2
Takano, E.3
Breitling, R.4
-
29
-
-
79959374585
-
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
-
Yim H., Haselbeck R., Niu W., Pujol-Baxley C., Burgard A., Boldt J., Khandurina J., Trawick J.D., Osterhout R.E., Stephen R., et al. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat Chem Biol 2011, 7:445-452.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 445-452
-
-
Yim, H.1
Haselbeck, R.2
Niu, W.3
Pujol-Baxley, C.4
Burgard, A.5
Boldt, J.6
Khandurina, J.7
Trawick, J.D.8
Osterhout, R.E.9
Stephen, R.10
-
30
-
-
77955118014
-
Microbial biosynthesis of alkanes
-
Schirmer A., Rude M.A., Li X., Popova E., del Cardayre S.B. Microbial biosynthesis of alkanes. Science 2010, 329:559-562.
-
(2010)
Science
, vol.329
, pp. 559-562
-
-
Schirmer, A.1
Rude, M.A.2
Li, X.3
Popova, E.4
del Cardayre, S.B.5
-
31
-
-
79952910616
-
Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways
-
Bond-Watts B.B., Bellerose R.J., Chang M.C. Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways. Nat Chem Biol 2011, 7:222-227.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 222-227
-
-
Bond-Watts, B.B.1
Bellerose, R.J.2
Chang, M.C.3
-
32
-
-
80051941601
-
Engineered reversal of the beta-oxidation cycle for the synthesis of fuels and chemicals
-
Dellomonaco C., Clomburg J.M., Miller E.N., Gonzalez R. Engineered reversal of the beta-oxidation cycle for the synthesis of fuels and chemicals. Nature 2011, 476:355-359.
-
(2011)
Nature
, vol.476
, pp. 355-359
-
-
Dellomonaco, C.1
Clomburg, J.M.2
Miller, E.N.3
Gonzalez, R.4
-
33
-
-
84856074574
-
An engineered microbial platform for direct biofuel production from brown macroalgae
-
Wargacki A.J., Leonard E., Win M.N., Regitsky D.D., Santos C.N., Kim P.B., Cooper S.R., Raisner R.M., Herman A., Sivitz A.B., et al. An engineered microbial platform for direct biofuel production from brown macroalgae. Science 2012, 335:308-313.
-
(2012)
Science
, vol.335
, pp. 308-313
-
-
Wargacki, A.J.1
Leonard, E.2
Win, M.N.3
Regitsky, D.D.4
Santos, C.N.5
Kim, P.B.6
Cooper, S.R.7
Raisner, R.M.8
Herman, A.9
Sivitz, A.B.10
-
34
-
-
77956371200
-
Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control
-
Leonard E., Ajikumar P.K., Thayer K., Xiao W.H., Mo J.D., Tidor B., Stephanopoulos G., Prather K.L. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control. Proc Natl Acad Sci U S A 2010, 107:13654-13659.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 13654-13659
-
-
Leonard, E.1
Ajikumar, P.K.2
Thayer, K.3
Xiao, W.H.4
Mo, J.D.5
Tidor, B.6
Stephanopoulos, G.7
Prather, K.L.8
-
35
-
-
70350351556
-
SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stability
-
Heinzelman P., Snow C.D., Smith M.A., Yu X., Kannan A., Boulware K., Villalobos A., Govindarajan S., Minshull J., Arnold F.H. SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stability. J Biol Chem 2009, 284:26229-26233.
-
(2009)
J Biol Chem
, vol.284
, pp. 26229-26233
-
-
Heinzelman, P.1
Snow, C.D.2
Smith, M.A.3
Yu, X.4
Kannan, A.5
Boulware, K.6
Villalobos, A.7
Govindarajan, S.8
Minshull, J.9
Arnold, F.H.10
-
36
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang H.H., Isaacs F.J., Carr P.A., Sun Z.Z., Xu G., Forest C.R., Church G.M. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898.
-
(2009)
Nature
, vol.460
, pp. 894-898
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
37
-
-
79960502359
-
Precise manipulation of chromosomes in vivo enables genome-wide codon replacement
-
Isaacs F.J., Carr P.A., Wang H.H., Lajoie M.J., Sterling B., Kraal L., Tolonen A.C., Gianoulis T.A., Goodman D.B., Reppas N.B., et al. Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science 2011, 333:348-353.
-
(2011)
Science
, vol.333
, pp. 348-353
-
-
Isaacs, F.J.1
Carr, P.A.2
Wang, H.H.3
Lajoie, M.J.4
Sterling, B.5
Kraal, L.6
Tolonen, A.C.7
Gianoulis, T.A.8
Goodman, D.B.9
Reppas, N.B.10
-
38
-
-
77955459156
-
Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
-
Warner J.R., Reeder P.J., Karimpour-Fard A., Woodruff L.B., Gill R.T. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides. Nat Biotechnol 2010, 28:856-862.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 856-862
-
-
Warner, J.R.1
Reeder, P.J.2
Karimpour-Fard, A.3
Woodruff, L.B.4
Gill, R.T.5
-
39
-
-
84862984706
-
Strategy for directing combinatorial genome engineering in Escherichia coli
-
Sandoval N.R., Kim J.Y., Glebes T.Y., Reeder P.J., Aucoin H.R., Warner J.R., Gill R.T. Strategy for directing combinatorial genome engineering in Escherichia coli. Proc Natl Acad Sci U S A 2012, 109:10540-10545.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 10540-10545
-
-
Sandoval, N.R.1
Kim, J.Y.2
Glebes, T.Y.3
Reeder, P.J.4
Aucoin, H.R.5
Warner, J.R.6
Gill, R.T.7
-
40
-
-
78649649132
-
PCRless library mutagenesis via oligonucleotide recombination in yeast
-
Pirakitikulr N., Ostrov N., Peralta-Yahya P., Cornish V.W. PCRless library mutagenesis via oligonucleotide recombination in yeast. Protein Sci 2010, 19:2336-2346.
-
(2010)
Protein Sci
, vol.19
, pp. 2336-2346
-
-
Pirakitikulr, N.1
Ostrov, N.2
Peralta-Yahya, P.3
Cornish, V.W.4
-
41
-
-
84871539146
-
A heritable recombination system for synthetic Darwinian evolution in yeast
-
Romanini D.W., Peralta-Yahya P., Mondol V., Cornish V.W. A heritable recombination system for synthetic Darwinian evolution in yeast. ACS Synth Biol 2012, 1:602-609.
-
(2012)
ACS Synth Biol
, vol.1
, pp. 602-609
-
-
Romanini, D.W.1
Peralta-Yahya, P.2
Mondol, V.3
Cornish, V.W.4
-
42
-
-
79960980943
-
A general strategy for the evolution of bond-forming enzymes using yeast display
-
Chen I., Dorr B.M., Liu D.R. A general strategy for the evolution of bond-forming enzymes using yeast display. Proc Natl Acad Sci U S A 2011, 108:11399-11404.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 11399-11404
-
-
Chen, I.1
Dorr, B.M.2
Liu, D.R.3
-
43
-
-
84862167101
-
High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
-
Michener J.K., Smolke C.D. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab Eng 2012, 14:306-316.
-
(2012)
Metab Eng
, vol.14
, pp. 306-316
-
-
Michener, J.K.1
Smolke, C.D.2
-
44
-
-
79955534060
-
A system for the continuous directed evolution of biomolecules
-
Esvelt K.M., Carlson J.C., Liu D.R. A system for the continuous directed evolution of biomolecules. Nature 2011, 472:499-503.
-
(2011)
Nature
, vol.472
, pp. 499-503
-
-
Esvelt, K.M.1
Carlson, J.C.2
Liu, D.R.3
-
45
-
-
0035281870
-
Metabolic modeling of microbial strains in silico
-
Covert M.W., Schilling C.H., Famili I., Edwards J.S., Goryanin I.I., Selkov E., Palsson B.O. Metabolic modeling of microbial strains in silico. Trends Biochem Sci 2001, 26:179-186.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 179-186
-
-
Covert, M.W.1
Schilling, C.H.2
Famili, I.3
Edwards, J.S.4
Goryanin, I.I.5
Selkov, E.6
Palsson, B.O.7
-
46
-
-
79960414910
-
Systems metabolic engineering for chemicals and materials
-
Lee J.W., Kim T.Y., Jang Y.S., Choi S., Lee S.Y. Systems metabolic engineering for chemicals and materials. Trends Biotechnol 2011, 29:370-378.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 370-378
-
-
Lee, J.W.1
Kim, T.Y.2
Jang, Y.S.3
Choi, S.4
Lee, S.Y.5
-
47
-
-
27744488443
-
Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals
-
Mahadevan R., Burgard A.P., Famili I., Van Dien S., Schilling C.H. Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals. Biotechnol Bioproc E 2005, 10:408-417.
-
(2005)
Biotechnol Bioproc E
, vol.10
, pp. 408-417
-
-
Mahadevan, R.1
Burgard, A.P.2
Famili, I.3
Van Dien, S.4
Schilling, C.H.5
-
48
-
-
84869744652
-
Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases
-
Michener J.K., Nielsen J., Smolke C.D. Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases. Proc Natl Acad Sci U S A 2012, 109:19504-19509.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 19504-19509
-
-
Michener, J.K.1
Nielsen, J.2
Smolke, C.D.3
-
49
-
-
79961072482
-
Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis
-
Hong K.K., Vongsangnak W., Vemuri G.N., Nielsen J. Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis. Proc Natl Acad Sci U S A 2011, 108:12179-12184.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12179-12184
-
-
Hong, K.K.1
Vongsangnak, W.2
Vemuri, G.N.3
Nielsen, J.4
-
50
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
Segre D., Vitkup D., Church G.M. Analysis of optimality in natural and perturbed metabolic networks. Proc Natl Acad Sci U S A 2002, 99:15112-15117.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15112-15117
-
-
Segre, D.1
Vitkup, D.2
Church, G.M.3
-
51
-
-
30044437327
-
Evolutionary programming as a platform for in silico metabolic engineering
-
Patil K.R., Rocha I., Forster J., Nielsen J. Evolutionary programming as a platform for in silico metabolic engineering. BMC Bioinformatics 2005, 6:308.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 308
-
-
Patil, K.R.1
Rocha, I.2
Forster, J.3
Nielsen, J.4
-
52
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster J., Famili I., Fu P., Palsson B.O., Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 2003, 13:244-253.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
53
-
-
70449592325
-
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
-
Asadollahi M.A., Maury J., Patil K.R., Schalk M., Clark A., Nielsen J. Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. Metab Eng 2009, 11:328-334.
-
(2009)
Metab Eng
, vol.11
, pp. 328-334
-
-
Asadollahi, M.A.1
Maury, J.2
Patil, K.R.3
Schalk, M.4
Clark, A.5
Nielsen, J.6
-
54
-
-
73949094856
-
Metabolic engineering of Escherichia coli for the production of polylactic acid and its copolymers
-
Jung Y.K., Kim T.Y., Park S.J., Lee S.Y. Metabolic engineering of Escherichia coli for the production of polylactic acid and its copolymers. Biotechnol Bioeng 2010, 105:161-171.
-
(2010)
Biotechnol Bioeng
, vol.105
, pp. 161-171
-
-
Jung, Y.K.1
Kim, T.Y.2
Park, S.J.3
Lee, S.Y.4
-
55
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed J.L., Vo T.D., Schilling C.H., Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol 2003, 4:R54.
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
56
-
-
0242487787
-
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
Burgard A.P., Pharkya P., Maranas C.D. Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol Bioeng 2003, 84:647-657.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
57
-
-
50649120833
-
Metabolic gene regulation in a dynamically changing environment
-
Bennett M.R., Pang W.L., Ostroff N.A., Baumgartner B.L., Nayak S., Tsimring L.S., Hasty J. Metabolic gene regulation in a dynamically changing environment. Nature 2008, 454:1119-1122.
-
(2008)
Nature
, vol.454
, pp. 1119-1122
-
-
Bennett, M.R.1
Pang, W.L.2
Ostroff, N.A.3
Baumgartner, B.L.4
Nayak, S.5
Tsimring, L.S.6
Hasty, J.7
-
58
-
-
2442526837
-
Just-in-time transcription program in metabolic pathways
-
Zaslaver A., Mayo A.E., Rosenberg R., Bashkin P., Sberro H., Tsalyuk M., Surette M.G., Alon U. Just-in-time transcription program in metabolic pathways. Nat Genet 2004, 36:486-491.
-
(2004)
Nat Genet
, vol.36
, pp. 486-491
-
-
Zaslaver, A.1
Mayo, A.E.2
Rosenberg, R.3
Bashkin, P.4
Sberro, H.5
Tsalyuk, M.6
Surette, M.G.7
Alon, U.8
-
59
-
-
77955690481
-
Considerations for using integral feedback control to construct a perfectly adapting synthetic gene network
-
Ang J., Bagh S., Ingalls B.P., McMillen D.R. Considerations for using integral feedback control to construct a perfectly adapting synthetic gene network. J Theor Biol 2010, 266:723-738.
-
(2010)
J Theor Biol
, vol.266
, pp. 723-738
-
-
Ang, J.1
Bagh, S.2
Ingalls, B.P.3
McMillen, D.R.4
-
60
-
-
77955852574
-
A model for improving microbial biofuel production using a synthetic feedback loop
-
Dunlop M.J., Keasling J.D., Mukhopadhyay A. A model for improving microbial biofuel production using a synthetic feedback loop. Syst Synth Biol 2010, 4:95-104.
-
(2010)
Syst Synth Biol
, vol.4
, pp. 95-104
-
-
Dunlop, M.J.1
Keasling, J.D.2
Mukhopadhyay, A.3
-
61
-
-
84857050180
-
Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways
-
Michener J.K., Thodey K., Liang J.C., Smolke C.D. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metab Eng 2012, 14:212-222.
-
(2012)
Metab Eng
, vol.14
, pp. 212-222
-
-
Michener, J.K.1
Thodey, K.2
Liang, J.C.3
Smolke, C.D.4
-
62
-
-
79959913313
-
Biosensors and their applications in microbial metabolic engineering
-
Zhang F., Keasling J. Biosensors and their applications in microbial metabolic engineering. Trends Microbiol 2011, 19:323-329.
-
(2011)
Trends Microbiol
, vol.19
, pp. 323-329
-
-
Zhang, F.1
Keasling, J.2
-
63
-
-
84455174703
-
Model-driven engineering of RNA devices to quantitatively program gene expression
-
Carothers J.M., Goler J.A., Juminaga D., Keasling J.D. Model-driven engineering of RNA devices to quantitatively program gene expression. Science 2011, 334:1716-1719.
-
(2011)
Science
, vol.334
, pp. 1716-1719
-
-
Carothers, J.M.1
Goler, J.A.2
Juminaga, D.3
Keasling, J.D.4
-
64
-
-
84862827747
-
Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene alpha-santalene in a fed-batch mode
-
Scalcinati G., Knuf C., Partow S., Chen Y., Maury J., Schalk M., Daviet L., Nielsen J., Siewers V. Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene alpha-santalene in a fed-batch mode. Metab Eng 2012, 14:91-103.
-
(2012)
Metab Eng
, vol.14
, pp. 91-103
-
-
Scalcinati, G.1
Knuf, C.2
Partow, S.3
Chen, Y.4
Maury, J.5
Schalk, M.6
Daviet, L.7
Nielsen, J.8
Siewers, V.9
-
65
-
-
77950858848
-
Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli
-
Tsao C.Y., Hooshangi S., Wu H.C., Valdes J.J., Bentley W.E. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metab Eng 2010, 12:291-297.
-
(2010)
Metab Eng
, vol.12
, pp. 291-297
-
-
Tsao, C.Y.1
Hooshangi, S.2
Wu, H.C.3
Valdes, J.J.4
Bentley, W.E.5
-
66
-
-
0034024497
-
Improving lycopene production in Escherichia coli by engineering metabolic control
-
Farmer W.R., Liao J.C. Improving lycopene production in Escherichia coli by engineering metabolic control. Nat Biotechnol 2000, 18:533-537.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 533-537
-
-
Farmer, W.R.1
Liao, J.C.2
-
67
-
-
84859633048
-
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
-
Zhang F., Carothers J.M., Keasling J.D. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat Biotechnol 2012, 30:354-359.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 354-359
-
-
Zhang, F.1
Carothers, J.M.2
Keasling, J.D.3
-
68
-
-
77950863739
-
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
-
Moon T.S., Dueber J.E., Shiue E., Prather K.L. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab Eng 2010, 12:298-305.
-
(2010)
Metab Eng
, vol.12
, pp. 298-305
-
-
Moon, T.S.1
Dueber, J.E.2
Shiue, E.3
Prather, K.L.4
-
69
-
-
84855229099
-
Synthetic scaffolds increased resveratrol biosynthesis in engineered yeast cells
-
Wang Y.C., Yu O. Synthetic scaffolds increased resveratrol biosynthesis in engineered yeast cells. J Biotechnol 2012, 157:258-260.
-
(2012)
J Biotechnol
, vol.157
, pp. 258-260
-
-
Wang, Y.C.1
Yu, O.2
-
70
-
-
84855991265
-
Modularity of a carbon-fixing protein organelle
-
Bonacci W., Teng P.K., Afonso B., Niederholtmeyer H., Grob P., Silver P.A., Savage D.F. Modularity of a carbon-fixing protein organelle. Proc Natl Acad Sci U S A 2012, 109:478-483.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 478-483
-
-
Bonacci, W.1
Teng, P.K.2
Afonso, B.3
Niederholtmeyer, H.4
Grob, P.5
Silver, P.A.6
Savage, D.F.7
-
71
-
-
84858009996
-
Engineered protein nano-compartments for targeted enzyme localization
-
Choudhary S., Quin M.B., Sanders M.A., Johnson E.T., Schmidt-Dannert C. Engineered protein nano-compartments for targeted enzyme localization. PLoS ONE 2012, 7:e33342.
-
(2012)
PLoS ONE
, vol.7
-
-
Choudhary, S.1
Quin, M.B.2
Sanders, M.A.3
Johnson, E.T.4
Schmidt-Dannert, C.5
-
72
-
-
77952135283
-
Short N-terminal sequences package proteins into bacterial microcompartments
-
Fan C.G., Cheng S.Q., Liu Y., Escobar C.M., Crowley C.S., Jefferson R.E., Yeates T.O., Bobik T.A. Short N-terminal sequences package proteins into bacterial microcompartments. Proc Natl Acad Sci U S A 2010, 107:7509-7514.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 7509-7514
-
-
Fan, C.G.1
Cheng, S.Q.2
Liu, Y.3
Escobar, C.M.4
Crowley, C.S.5
Jefferson, R.E.6
Yeates, T.O.7
Bobik, T.A.8
-
73
-
-
84866280237
-
Interactions between the termini of lumen enzymes and shell proteins mediate enzyme encapsulation into bacterial microcompartments
-
Fan C.G., Cheng S.Q., Sinha S., Bobik T.A. Interactions between the termini of lumen enzymes and shell proteins mediate enzyme encapsulation into bacterial microcompartments. Proc Natl Acad Sci U S A 2012, 109:14995-15000.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 14995-15000
-
-
Fan, C.G.1
Cheng, S.Q.2
Sinha, S.3
Bobik, T.A.4
-
74
-
-
73349139923
-
Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides
-
Gibson D.G. Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides. Nucleic Acids Res 2009, 37:6984-6990.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6984-6990
-
-
Gibson, D.G.1
-
75
-
-
84865611750
-
Harnessing recombination to speed adaptive evolution in Escherichia coli
-
Winkler J., Kao K.C. Harnessing recombination to speed adaptive evolution in Escherichia coli. Metab Eng 2012, 14:487-495.
-
(2012)
Metab Eng
, vol.14
, pp. 487-495
-
-
Winkler, J.1
Kao, K.C.2
|