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Volumn 37, Issue 2, 2009, Pages

DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways

Author keywords

[No Author keywords available]

Indexed keywords

XYLOSE; ZEAXANTHIN; DNA; XANTHOPHYLL;

EID: 59649108349     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn991     Document Type: Article
Times cited : (579)

References (42)
  • 4
    • 25144431998 scopus 로고    scopus 로고
    • Yan,Y., Kohli,A. and Ko.as,M.A. (2005) Biosynthesis of natural flavanones in Saccharomyces cerevisiae. Appl. Environ. Microbiol., 71, 5610-5613.
    • Yan,Y., Kohli,A. and Ko.as,M.A. (2005) Biosynthesis of natural flavanones in Saccharomyces cerevisiae. Appl. Environ. Microbiol., 71, 5610-5613.
  • 5
    • 33751120932 scopus 로고    scopus 로고
    • Production of isoprenoid pharmaceuticals by engineered microbes
    • Chang,M.C. and Keasling,J.D. (2006) Production of isoprenoid pharmaceuticals by engineered microbes. Nat. Chem. Biol., 2, 674-681.
    • (2006) Nat. Chem. Biol , vol.2 , pp. 674-681
    • Chang, M.C.1    Keasling, J.D.2
  • 6
    • 33847309176 scopus 로고    scopus 로고
    • Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
    • Pitera,D.J., Paddon,C.J., Newman,J.D. and Keasling,J.D. (2007) Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab. Eng., 9, 193-207.
    • (2007) Metab. Eng , vol.9 , pp. 193-207
    • Pitera, D.J.1    Paddon, C.J.2    Newman, J.D.3    Keasling, J.D.4
  • 8
    • 34447308322 scopus 로고    scopus 로고
    • Genomescale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture
    • Hjersted,J.L., Henson,M.A. and Mahadevan,R. (2007) Genomescale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Biotechnol. Bioeng., 97, 1190-1204.
    • (2007) Biotechnol. Bioeng , vol.97 , pp. 1190-1204
    • Hjersted, J.L.1    Henson, M.A.2    Mahadevan, R.3
  • 10
    • 38749148516 scopus 로고    scopus 로고
    • Keasling,J.D. (2008) Synthetic biology for synthetic chemistry. ACS Chem. Biol., 3, 64-76.
    • Keasling,J.D. (2008) Synthetic biology for synthetic chemistry. ACS Chem. Biol., 3, 64-76.
  • 11
    • 33847608289 scopus 로고    scopus 로고
    • Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
    • Li,M.Z. and Elledge,S.J. (2007) Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat. Methods, 4, 251-256.
    • (2007) Nat. Methods , vol.4 , pp. 251-256
    • Li, M.Z.1    Elledge, S.J.2
  • 12
    • 37749014043 scopus 로고    scopus 로고
    • Bottom-up genome assembly using the Bacillus subtilis genome vector
    • Itaya,M., Fujita,K., Kuroki,A. and Tsuge,K. (2008) Bottom-up genome assembly using the Bacillus subtilis genome vector. Nat. Methods, 5, 41-43.
    • (2008) Nat. Methods , vol.5 , pp. 41-43
    • Itaya, M.1    Fujita, K.2    Kuroki, A.3    Tsuge, K.4
  • 13
    • 0032893534 scopus 로고    scopus 로고
    • General method for plasmid construction using homologous recombination
    • Raymond,C.K., Pownder,T.A. and Sexson,S.L. (1999) General method for plasmid construction using homologous recombination. Biotechniques 26, 134-141.
    • (1999) Biotechniques , vol.26 , pp. 134-141
    • Raymond, C.K.1    Pownder, T.A.2    Sexson, S.L.3
  • 14
    • 3943091201 scopus 로고    scopus 로고
    • Coupling homologous recombination with growth selection in yeast: A tool for construction of random DNA sequence libraries
    • Schaerer-Brodbeck,C. and Barberis,A. (2004) Coupling homologous recombination with growth selection in yeast: A tool for construction of random DNA sequence libraries. Biotechniques, 37, 202-206.
    • (2004) Biotechniques , vol.37 , pp. 202-206
    • Schaerer-Brodbeck, C.1    Barberis, A.2
  • 15
    • 0035209031 scopus 로고    scopus 로고
    • Plasmid construction by linker-assisted homologous recombination in yeast
    • Gunyuzlu,P.L., Hollis,G.F. and Toyn,J.H. (2001) Plasmid construction by linker-assisted homologous recombination in yeast. Biotechniques, 31, 1246-1250.
    • (2001) Biotechniques , vol.31 , pp. 1246-1250
    • Gunyuzlu, P.L.1    Hollis, G.F.2    Toyn, J.H.3
  • 17
    • 0023615620 scopus 로고
    • Plasmid construction by homologous recombination in yeast
    • Ma,H., Kunes,S., Schatz,P.J. and Botstein,D. (1987) Plasmid construction by homologous recombination in yeast. Gene, 58, 201-216.
    • (1987) Gene , vol.58 , pp. 201-216
    • Ma, H.1    Kunes, S.2    Schatz, P.J.3    Botstein, D.4
  • 18
    • 0030873221 scopus 로고    scopus 로고
    • Recombination-mediated PCR-directed plasmid construction in vivo in yeast
    • Oldenburg,K.R., Vo,K.T., Michaelis,S. and Paddon,C. (1997) Recombination-mediated PCR-directed plasmid construction in vivo in yeast. Nucleic Acids Res., 25, 451-452.
    • (1997) Nucleic Acids Res , vol.25 , pp. 451-452
    • Oldenburg, K.R.1    Vo, K.T.2    Michaelis, S.3    Paddon, C.4
  • 19
    • 0036144866 scopus 로고    scopus 로고
    • Linker-mediated recombinational subcloning of large DNA fragments using yeast
    • Raymond,C.K., Sims,E.H. and Olson,M.V. (2002) Linker-mediated recombinational subcloning of large DNA fragments using yeast. Genome Res., 12, 190-197.
    • (2002) Genome Res , vol.12 , pp. 190-197
    • Raymond, C.K.1    Sims, E.H.2    Olson, M.V.3
  • 20
    • 0141891826 scopus 로고    scopus 로고
    • Counter-selection facilitated plasmid construction by homologous recombination in Saccharomyces cerevisiae
    • Anderson,P.R. and Haj-Ahmad,Y. (2003) Counter-selection facilitated plasmid construction by homologous recombination in Saccharomyces cerevisiae. Biotechniques, 35, 692-698.
    • (2003) Biotechniques , vol.35 , pp. 692-698
    • Anderson, P.R.1    Haj-Ahmad, Y.2
  • 21
    • 0029096027 scopus 로고
    • A method for performing precise alterations in the yeast genome using a recyclable selectable marker
    • Langle-Rouault,F. and Jacobs,E. (1995) A method for performing precise alterations in the yeast genome using a recyclable selectable marker. Nucleic Acids Res., 23, 3079-3081.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3079-3081
    • Langle-Rouault, F.1    Jacobs, E.2
  • 22
    • 0029120399 scopus 로고
    • Micro-homology mediated PCR targeting in Saccharomyces cerevisiae
    • Manivasakam,P., Weber,S.C., Mcelver,J. and Schiestl,R.H. (1995) Micro-homology mediated PCR targeting in Saccharomyces cerevisiae. Nucleic Acids Res., 23, 2799-2800.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2799-2800
    • Manivasakam, P.1    Weber, S.C.2    Mcelver, J.3    Schiestl, R.H.4
  • 25
    • 19244368493 scopus 로고    scopus 로고
    • A genetic system for direct selection of gene-positive clones during recombinational cloning in yeast
    • Noskov,V., Kouprina,N., Leem,S.H., Koriabine,M., Barrett,J.C. and Larionov,V. (2002) A genetic system for direct selection of gene-positive clones during recombinational cloning in yeast. Nucleic Acids Res., 30, e8.
    • (2002) Nucleic Acids Res , vol.30
    • Noskov, V.1    Kouprina, N.2    Leem, S.H.3    Koriabine, M.4    Barrett, J.C.5    Larionov, V.6
  • 26
    • 0038487775 scopus 로고    scopus 로고
    • A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast
    • Noskov,V.N., Kouprina,N., Leem,S.H., Ouspenski,I., Barrett,J.C. and Larionov,V. (2003) A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast. BMC Genomics, 4, 16.
    • (2003) BMC Genomics , vol.4 , pp. 16
    • Noskov, V.N.1    Kouprina, N.2    Leem, S.H.3    Ouspenski, I.4    Barrett, J.C.5    Larionov, V.6
  • 27
    • 33748800981 scopus 로고    scopus 로고
    • Innovation - TAR cloning: Insights into gene function, long-range haplotypes and genome structure and evolution
    • Kouprina,N. and Larionov,V. (2006) Innovation - TAR cloning: Insights into gene function, long-range haplotypes and genome structure and evolution. Nat. Rev. Genet., 7, 805-812.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 805-812
    • Kouprina, N.1    Larionov, V.2
  • 30
    • 0031193436 scopus 로고    scopus 로고
    • Sequential delta-integration for the regulated insertion of cloned genes in Saccharomyces cerevisiae
    • Lee,F.W. and Da Silva,N.A. (1997) Sequential delta-integration for the regulated insertion of cloned genes in Saccharomyces cerevisiae. Biotechnol. Prog., 13, 368-373.
    • (1997) Biotechnol. Prog , vol.13 , pp. 368-373
    • Lee, F.W.1    Da Silva, N.A.2
  • 31
    • 0024556150 scopus 로고
    • Engineering hybrid genes without the use of restriction enzymes - gene-splicing by overlap extension
    • Horton,R.M., Hunt,H.D., Ho,S.N., Pullen,J.K. and Pease,L.R. (1989) Engineering hybrid genes without the use of restriction enzymes - gene-splicing by overlap extension. Gene, 77, 61-68.
    • (1989) Gene , vol.77 , pp. 61-68
    • Horton, R.M.1    Hunt, H.D.2    Ho, S.N.3    Pullen, J.K.4    Pease, L.R.5
  • 32
    • 15444371063 scopus 로고    scopus 로고
    • Heterologous expression, purification, and characterization of a highly active xylose reductase from Neurospora crassa
    • Woodyer,R., Simurdiak,M., van der Donk,W.A. and Zhao,H.M. (2005) Heterologous expression, purification, and characterization of a highly active xylose reductase from Neurospora crassa. Appl Environ. Microbiol., 71, 1642-1647.
    • (2005) Appl Environ. Microbiol , vol.71 , pp. 1642-1647
    • Woodyer, R.1    Simurdiak, M.2    van der Donk, W.A.3    Zhao, H.M.4
  • 33
    • 0036189820 scopus 로고    scopus 로고
    • Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function
    • Jin,Y.S., Jones,S., Shi,N.Q. and Jeffries,T.W. (2002) Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl. Environ. Microbiol., 68, 1232-1239.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 1232-1239
    • Jin, Y.S.1    Jones, S.2    Shi, N.Q.3    Jeffries, T.W.4
  • 34
    • 0031832290 scopus 로고    scopus 로고
    • Genetically engineered Saccharomyces yeast capable of effective cofermentation of glucose and xylose
    • Ho,N.W., Chen,Z. and Brainard,A.P. (1998) Genetically engineered Saccharomyces yeast capable of effective cofermentation of glucose and xylose. Appl. Environ. Microbiol., 64, 1852-1859.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1852-1859
    • Ho, N.W.1    Chen, Z.2    Brainard, A.P.3
  • 35
    • 33646569083 scopus 로고    scopus 로고
    • Co-utilization of L-arabinose and D-xylose by laboratory and industrial Saccharomyces cerevisiae strains
    • Karhumaa,K., Wiedemann,B., Hahn-Hagerdal,B., Boles,E. and Gorwa-Grauslund,M.F. (2006) Co-utilization of L-arabinose and D-xylose by laboratory and industrial Saccharomyces cerevisiae strains. Microb. Cell Fact, 5, 18.
    • (2006) Microb. Cell Fact , vol.5 , pp. 18
    • Karhumaa, K.1    Wiedemann, B.2    Hahn-Hagerdal, B.3    Boles, E.4    Gorwa-Grauslund, M.F.5
  • 36
    • 33747115357 scopus 로고    scopus 로고
    • Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae
    • Chemler,J.A., Yan,Y. and Koffas,M.A. (2006) Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae. Microb. Cell Fact, 5, 20.
    • (2006) Microb. Cell Fact , vol.5 , pp. 20
    • Chemler, J.A.1    Yan, Y.2    Koffas, M.A.3
  • 37
    • 0032477487 scopus 로고    scopus 로고
    • Metabolic engineering for the production of carotenoids in non-carotenogenic bacteria and yeasts
    • Misawa,N. and Shimada,H. (1997) Metabolic engineering for the production of carotenoids in non-carotenogenic bacteria and yeasts. J. Biotechnol., 59, 169-181.
    • (1997) J. Biotechnol , vol.59 , pp. 169-181
    • Misawa, N.1    Shimada, H.2
  • 38
    • 0025630190 scopus 로고
    • Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli
    • Misawa,N., Nakagawa,M., Kobayashi,K., Yamano,S., Izawa,Y., Nakamura,K. and Harashima,K. (1990) Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli. J. Bacteriol., 172, 6704-6712.
    • (1990) J. Bacteriol , vol.172 , pp. 6704-6712
    • Misawa, N.1    Nakagawa, M.2    Kobayashi, K.3    Yamano, S.4    Izawa, Y.5    Nakamura, K.6    Harashima, K.7
  • 39
    • 20444412612 scopus 로고    scopus 로고
    • Novel carotenoid oxidase involved in biosynthesis of 4,4′-diapolycopene dialdehyde
    • Tao,L., Schenzle,A., Odom,J.M. and Cheng,Q. (2005) Novel carotenoid oxidase involved in biosynthesis of 4,4′-diapolycopene dialdehyde. Appl. Environ. Microbiol., 71, 3294-3301.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 3294-3301
    • Tao, L.1    Schenzle, A.2    Odom, J.M.3    Cheng, Q.4
  • 40
    • 0030817060 scopus 로고    scopus 로고
    • Minimum length of sequence homology required for in vivo cloning by homologous recombination in yeast
    • Hua,S.B., Qiu,M.S., Chan,E., Zhu,L. and Luo,Y. (1997) Minimum length of sequence homology required for in vivo cloning by homologous recombination in yeast. Plasmid, 38, 91-96.
    • (1997) Plasmid , vol.38 , pp. 91-96
    • Hua, S.B.1    Qiu, M.S.2    Chan, E.3    Zhu, L.4    Luo, Y.5
  • 41
    • 58549117130 scopus 로고    scopus 로고
    • Mutagenic inverted repeat assisted genome engineering (MIRAGE)
    • doi:10.1093/nar/gkn943
    • Nair,U.N. and Zhao,H.M. (2009) Mutagenic inverted repeat assisted genome engineering (MIRAGE). Nucleic Acids Res., doi:10.1093/nar/gkn943.
    • (2009) Nucleic Acids Res
    • Nair, U.N.1    Zhao, H.M.2
  • 42
    • 0032915204 scopus 로고    scopus 로고
    • Heterologous URA3MX cassettes for gene replacement in Saccharomyces cerevisiae
    • Goldstein,A.L., Pan,X. and McCusker,J.H. (1999) Heterologous URA3MX cassettes for gene replacement in Saccharomyces cerevisiae. Yeast, 15, 507-511.
    • (1999) Yeast , vol.15 , pp. 507-511
    • Goldstein, A.L.1    Pan, X.2    McCusker, J.H.3


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