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Volumn 9, Issue 10, 2013, Pages

Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; CELL PROLIFERATION; CELL SIGNALING; DEREGULATION; DISEASES;

EID: 84887303651     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003286     Document Type: Article
Times cited : (155)

References (89)
  • 1
    • 56549091431 scopus 로고    scopus 로고
    • The complexity of mitogen-activated protein kinases (MAPKs) made simple
    • doi:10.1007/s00018-008-8170-7
    • Krishna M, Narang H, (2008) The complexity of mitogen-activated protein kinases (MAPKs) made simple. Cellular and Molecular Life Sciences 65: 3525-3544 doi:10.1007/s00018-008-8170-7.
    • (2008) Cellular and Molecular Life Sciences , vol.65 , pp. 3525-3544
    • Krishna, M.1    Narang, H.2
  • 2
    • 41549160315 scopus 로고    scopus 로고
    • Phosphatase-mediated crosstalk between MAPK signaling pathways in the regulation of cell survival
    • doi:10.1096/fj.06-7859rev
    • Junttila MR, Li S-P, Westermarck J, (2007) Phosphatase-mediated crosstalk between MAPK signaling pathways in the regulation of cell survival. The FASEB Journal 22: 954-965 doi:10.1096/fj.06-7859rev.
    • (2007) The FASEB Journal , vol.22 , pp. 954-965
    • Junttila, M.R.1    Li, S.-P.2    Westermarck, J.3
  • 3
    • 0038374164 scopus 로고    scopus 로고
    • Cross-talk between JNK/SAPK and ERK/MAPK Pathways: sustained activation of JNK blocks ERK activation by mitogenic factors
    • doi:10.1074/jbc.M303264200
    • Shen YH, (2003) Cross-talk between JNK/SAPK and ERK/MAPK Pathways: sustained activation of JNK blocks ERK activation by mitogenic factors. Journal of Biological Chemistry 278: 26715-26721 doi:10.1074/jbc.M303264200.
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 26715-26721
    • Shen, Y.H.1
  • 4
    • 71849119627 scopus 로고    scopus 로고
    • The subcellular localization of MEK and ERK-A novel nuclear translocation signal (NTS) paves a way to the nucleus
    • doi:10.1016/j.mce.2009.04.008
    • Zehorai E, Yao Z, Plotnikov A, Seger R, (2010) The subcellular localization of MEK and ERK-A novel nuclear translocation signal (NTS) paves a way to the nucleus. Molecular and Cellular Endocrinology 314: 213-220 doi:10.1016/j.mce.2009.04.008.
    • (2010) Molecular and Cellular Endocrinology , vol.314 , pp. 213-220
    • Zehorai, E.1    Yao, Z.2    Plotnikov, A.3    Seger, R.4
  • 5
    • 34248595035 scopus 로고    scopus 로고
    • Differential regulation of MAP kinase signalling by dual-specificity protein phosphatases
    • doi:10.1038/sj.onc.1210412
    • Owens DM, Keyse SM, (2007) Differential regulation of MAP kinase signalling by dual-specificity protein phosphatases. Oncogene 26: 3203-3213 doi:10.1038/sj.onc.1210412.
    • (2007) Oncogene , vol.26 , pp. 3203-3213
    • Owens, D.M.1    Keyse, S.M.2
  • 6
    • 0344393408 scopus 로고    scopus 로고
    • Regulation of MAP kinase signaling modules by scaffold proteins in mammals
    • doi:10.1146/annurev.cellbio.19.111401.091942
    • Morrison DK, Davis RJ, (2003) Regulation of MAP kinase signaling modules by scaffold proteins in mammals. Annual Review of Cell and Developmental Biology 19: 91-118 doi:10.1146/annurev.cellbio.19.111401.091942.
    • (2003) Annual Review of Cell and Developmental Biology , vol.19 , pp. 91-118
    • Morrison, D.K.1    Davis, R.J.2
  • 7
    • 0035066383 scopus 로고    scopus 로고
    • Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation
    • Kyriakis JM, Avruch J, (2001) Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation. Physiological reviews 81: 807-869.
    • (2001) Physiological Reviews , vol.81 , pp. 807-869
    • Kyriakis, J.M.1    Avruch, J.2
  • 8
    • 2942530310 scopus 로고    scopus 로고
    • ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions
    • Roux PP, Blenis J, (2004) ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions. Microbiology and molecular biology reviews 68: 320-344.
    • (2004) Microbiology and Molecular Biology Reviews , vol.68 , pp. 320-344
    • Roux, P.P.1    Blenis, J.2
  • 9
    • 14844318077 scopus 로고    scopus 로고
    • When kinases meet mathematics: the systems biology of MAPK signalling
    • doi:10.1016/j.febslet.2005.02.002
    • Kolch W, Calder M, Gilbert D, (2005) When kinases meet mathematics: the systems biology of MAPK signalling. FEBS Letters 579: 1891-1895 doi:10.1016/j.febslet.2005.02.002.
    • (2005) FEBS Letters , vol.579 , pp. 1891-1895
    • Kolch, W.1    Calder, M.2    Gilbert, D.3
  • 10
    • 79960907910 scopus 로고    scopus 로고
    • The MAPK cascades: Signaling components, nuclear roles and mechanisms of nuclear translocation
    • doi:10.1016/j.bbamcr.2010.12.012
    • Plotnikov A, Zehorai E, Procaccia S, Seger R, (2011) The MAPK cascades: Signaling components, nuclear roles and mechanisms of nuclear translocation. Biochimica et Biophysica Acta (BBA)- Molecular Cell Research 1813: 1619-1633 doi:10.1016/j.bbamcr.2010.12.012.
    • (2011) Biochimica Et Biophysica Acta (BBA) - Molecular Cell Research , vol.1813 , pp. 1619-1633
    • Plotnikov, A.1    Zehorai, E.2    Procaccia, S.3    Seger, R.4
  • 11
    • 34248583886 scopus 로고    scopus 로고
    • MAP kinase signalling pathways in cancer
    • doi:10.1038/sj.onc.1210421
    • Dhillon AS, Hagan S, Rath O, Kolch W, (2007) MAP kinase signalling pathways in cancer. Oncogene 26: 3279-3290 doi:10.1038/sj.onc.1210421.
    • (2007) Oncogene , vol.26 , pp. 3279-3290
    • Dhillon, A.S.1    Hagan, S.2    Rath, O.3    Kolch, W.4
  • 12
    • 67749117934 scopus 로고    scopus 로고
    • Signal integration by JNK and p38 MAPK pathways in cancer development
    • doi:10.1038/nrc2694
    • Wagner EF, Nebreda ÁR, (2009) Signal integration by JNK and p38 MAPK pathways in cancer development. Nature Reviews Cancer 9: 537-549 doi:10.1038/nrc2694.
    • (2009) Nature Reviews Cancer , vol.9 , pp. 537-549
    • Wagner, E.F.1    Nebreda, ÁR.2
  • 13
    • 51449119250 scopus 로고    scopus 로고
    • Therapeutic strategies for inhibiting oncogenic BRAF signaling
    • doi:10.1016/j.coph.2008.06.014
    • Halilovic E, Solit DB, (2008) Therapeutic strategies for inhibiting oncogenic BRAF signaling. Current Opinion in Pharmacology 8: 419-426 doi:10.1016/j.coph.2008.06.014.
    • (2008) Current Opinion in Pharmacology , vol.8 , pp. 419-426
    • Halilovic, E.1    Solit, D.B.2
  • 14
    • 84855894652 scopus 로고    scopus 로고
    • Targeting the MAPK-RAS-RAF signaling pathway in cancer therapy
    • doi:10.1517/14728222.2011.645805
    • Santarpia L, Lippman SM, El-Naggar AK, (2012) Targeting the MAPK-RAS-RAF signaling pathway in cancer therapy. Expert Opinion on Therapeutic Targets 16: 103-119 doi:10.1517/14728222.2011.645805.
    • (2012) Expert Opinion on Therapeutic Targets , vol.16 , pp. 103-119
    • Santarpia, L.1    Lippman, S.M.2    El-Naggar, A.K.3
  • 15
    • 77953403675 scopus 로고    scopus 로고
    • Systemic therapy of metastatic bladder cancer in the molecular era: current status and future promise
    • doi:10.1517/13543784.2010.496450
    • Zachos I, Konstantinopoulos PA, Tzortzis V, Gravas S, Karatzas A, et al. (2010) Systemic therapy of metastatic bladder cancer in the molecular era: current status and future promise. Expert Opinion on Investigational Drugs 19: 875-887 doi:10.1517/13543784.2010.496450.
    • (2010) Expert Opinion on Investigational Drugs , vol.19 , pp. 875-887
    • Zachos, I.1    Konstantinopoulos, P.A.2    Tzortzis, V.3    Gravas, S.4    Karatzas, A.5
  • 16
    • 72249120832 scopus 로고    scopus 로고
    • The p38 MAPK inhibitors for the treatment of inflammatory diseases and cancer
    • doi:10.1517/13543780903321490
    • Yong H-Y, Koh M-S, Moon A, (2009) The p38 MAPK inhibitors for the treatment of inflammatory diseases and cancer. Expert Opinion on Investigational Drugs 18: 1893-1905 doi:10.1517/13543780903321490.
    • (2009) Expert Opinion on Investigational Drugs , vol.18 , pp. 1893-1905
    • Yong, H.-Y.1    Koh, M.-S.2    Moon, A.3
  • 17
    • 77956596327 scopus 로고    scopus 로고
    • Molecular targeted therapy for patients with melanoma: the promise of MAPK pathway inhibition and beyond
    • doi:10.1517/13543784.2010.504709
    • Sullivan RJ, Atkins MB, (2010) Molecular targeted therapy for patients with melanoma: the promise of MAPK pathway inhibition and beyond. Expert Opinion on Investigational Drugs 19: 1205-1216 doi:10.1517/13543784.2010.504709.
    • (2010) Expert Opinion on Investigational Drugs , vol.19 , pp. 1205-1216
    • Sullivan, R.J.1    Atkins, M.B.2
  • 18
    • 85135546153 scopus 로고    scopus 로고
    • Young A, Lyons J, Miller AL, Phan VT, Alarcón IR, et al. (2009) Chapter 1 Ras Signaling and Therapies. Advances in Cancer Research. Elsevier, Vol. 102. pp. 1-17. Available
    • Young A, Lyons J, Miller AL, Phan VT, Alarcón IR, et al. (2009) Chapter 1 Ras Signaling and Therapies. Advances in Cancer Research. Elsevier, Vol. 102. pp. 1-17. Available: http://linkinghub.elsevier.com/retrieve/pii/S0065230X09020016.
  • 19
    • 79953234255 scopus 로고    scopus 로고
    • Resistance to MEK inhibitors: should we co-target upstream?
    • Poulikakos PI, Solit DB, (2011) Resistance to MEK inhibitors: should we co-target upstream? Science Signalling 4: pe16.
    • (2011) Science Signalling , vol.4
    • Poulikakos, P.I.1    Solit, D.B.2
  • 20
    • 77349114891 scopus 로고    scopus 로고
    • The role of MAP kinases and MAP kinase phosphatase-1 in resistance to breast cancer treatment
    • doi:10.1007/s10555-010-9208-5
    • Haagenson KK, Wu GS, (2010) The role of MAP kinases and MAP kinase phosphatase-1 in resistance to breast cancer treatment. Cancer and Metastasis Reviews 29: 143-149 doi:10.1007/s10555-010-9208-5.
    • (2010) Cancer and Metastasis Reviews , vol.29 , pp. 143-149
    • Haagenson, K.K.1    Wu, G.S.2
  • 21
    • 79951928689 scopus 로고    scopus 로고
    • Novel mitogen-activated protein kinase kinase inhibitors
    • doi:10.1517/13543784.2011.548803
    • Chapman MS, Miner JN, (2011) Novel mitogen-activated protein kinase kinase inhibitors. Expert Opinion on Investigational Drugs 20: 209-220 doi:10.1517/13543784.2011.548803.
    • (2011) Expert Opinion on Investigational Drugs , vol.20 , pp. 209-220
    • Chapman, M.S.1    Miner, J.N.2
  • 22
    • 68549090942 scopus 로고    scopus 로고
    • Targeting MAPK (Ras/ERK) and PI3K/Akt pathways in pituitary tumorigenesis
    • doi:10.1517/14728220903170675
    • Cakir M, Grossman AB, (2009) Targeting MAPK (Ras/ERK) and PI3K/Akt pathways in pituitary tumorigenesis. Expert Opinion on Therapeutic Targets 13: 1121-1134 doi:10.1517/14728220903170675.
    • (2009) Expert Opinion on Therapeutic Targets , vol.13 , pp. 1121-1134
    • Cakir, M.1    Grossman, A.B.2
  • 23
    • 68949086867 scopus 로고    scopus 로고
    • Targeting the RAF-MEK-ERK pathway in cancer therapy
    • doi:10.1016/j.canlet.2009.01.022
    • Montagut C, Settleman J, (2009) Targeting the RAF-MEK-ERK pathway in cancer therapy. Cancer Letters 283: 125-134 doi:10.1016/j.canlet.2009.01.022.
    • (2009) Cancer Letters , vol.283 , pp. 125-134
    • Montagut, C.1    Settleman, J.2
  • 24
    • 77954216113 scopus 로고    scopus 로고
    • Targeting the MAPK pathway in melanoma: Why some approaches succeed and other fail
    • doi:10.1016/j.bcp.2010.04.029
    • Inamdar GS, Madhunapantula SV, Robertson GP, (2010) Targeting the MAPK pathway in melanoma: Why some approaches succeed and other fail. Biochemical Pharmacology 80: 624-637 doi:10.1016/j.bcp.2010.04.029.
    • (2010) Biochemical Pharmacology , vol.80 , pp. 624-637
    • Inamdar, G.S.1    Madhunapantula, S.V.2    Robertson, G.P.3
  • 25
    • 29144435996 scopus 로고    scopus 로고
    • Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway
    • doi:10.1042/BJ20050908
    • Orton RJ, Sturm OE, Vyshemirsky V, Calder M, Gilbert DR, et al. (2005) Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway. Biochemical Journal 392: 249 doi:10.1042/BJ20050908.
    • (2005) Biochemical Journal , vol.392 , pp. 249
    • Orton, R.J.1    Sturm, O.E.2    Vyshemirsky, V.3    Calder, M.4    Gilbert, D.R.5
  • 27
    • 0034019315 scopus 로고    scopus 로고
    • Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
    • Kholodenko BN, (2001) Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. European Journal of Biochemistry 267: 1583-1588.
    • (2001) European Journal of Biochemistry , vol.267 , pp. 1583-1588
    • Kholodenko, B.N.1
  • 28
    • 0034705227 scopus 로고    scopus 로고
    • Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties
    • Levchenko A, Bruck J, Sternberg PW, (2000) Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proceedings of the National Academy of Sciences 97: 5818-5823.
    • (2000) Proceedings of the National Academy of Sciences , vol.97 , pp. 5818-5823
    • Levchenko, A.1    Bruck, J.2    Sternberg, P.W.3
  • 29
    • 0842288229 scopus 로고    scopus 로고
    • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
    • doi:10.1083/jcb.200308060
    • Markevich NI, (2004) Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. The Journal of Cell Biology 164: 353-359 doi:10.1083/jcb.200308060.
    • (2004) The Journal of Cell Biology , vol.164 , pp. 353-359
    • Markevich, N.I.1
  • 30
    • 34848887670 scopus 로고    scopus 로고
    • Competing Docking Interactions can Bring About Bistability in the MAPK Cascade
    • doi:10.1529/biophysj.107.109132
    • Legewie S, Schoeberl B, Blüthgen N, Herzel H, (2007) Competing Docking Interactions can Bring About Bistability in the MAPK Cascade. Biophysical Journal 93: 2279-2288 doi:10.1529/biophysj.107.109132.
    • (2007) Biophysical Journal , vol.93 , pp. 2279-2288
    • Legewie, S.1    Schoeberl, B.2    Blüthgen, N.3    Herzel, H.4
  • 31
    • 39349111646 scopus 로고    scopus 로고
    • Bistable MAP kinase activity: a plausible mechanism contributing to maintenance of late long-term potentiation
    • doi:10.1152/ajpcell.00447.2007
    • Smolen P, Baxter DA, Byrne JH, (2007) Bistable MAP kinase activity: a plausible mechanism contributing to maintenance of late long-term potentiation. AJP: Cell Physiology 294: C503-C515 doi:10.1152/ajpcell.00447.2007.
    • (2007) AJP: Cell Physiology , vol.294
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 33
    • 0034613112 scopus 로고    scopus 로고
    • Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells
    • Brightman FA, Fell DA, (2000) Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells. FEBS letters 482: 169-174.
    • (2000) FEBS Letters , vol.482 , pp. 169-174
    • Brightman, F.A.1    Fell, D.A.2
  • 34
    • 0036212767 scopus 로고    scopus 로고
    • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
    • Schoeberl B, Eichler-Jonsson C, Gilles ED, Muller G, (2002) Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature biotechnology 20: 370-375.
    • (2002) Nature Biotechnology , vol.20 , pp. 370-375
    • Schoeberl, B.1    Eichler-Jonsson, C.2    Gilles, E.D.3    Muller, G.4
  • 35
    • 0041344538 scopus 로고    scopus 로고
    • A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling
    • Hatakeyama M, Kimura S, Naka T, Kawasaki T, Yumoto N, et al. (2003) A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling. Biochemical Journal 373: 451.
    • (2003) Biochemical Journal , vol.373 , pp. 451
    • Hatakeyama, M.1    Kimura, S.2    Naka, T.3    Kawasaki, T.4    Yumoto, N.5
  • 37
    • 17344362384 scopus 로고    scopus 로고
    • Prediction and validation of the distinct dynamics of transient and sustained ERK activation
    • doi:10.1038/ncb1233
    • Sasagawa S, Ozaki Y, Fujita K, Kuroda S, (2005) Prediction and validation of the distinct dynamics of transient and sustained ERK activation. Nature Cell Biology 7: 365-373 doi:10.1038/ncb1233.
    • (2005) Nature Cell Biology , vol.7 , pp. 365-373
    • Sasagawa, S.1    Ozaki, Y.2    Fujita, K.3    Kuroda, S.4
  • 38
    • 70449513896 scopus 로고    scopus 로고
    • Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway
    • doi:10.1186/1752-0509-3-100
    • Orton RJ, Adriaens ME, Gormand A, Sturm OE, Kolch W, et al. (2009) Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway. BMC Systems Biology 3: 100 doi:10.1186/1752-0509-3-100.
    • (2009) BMC Systems Biology , vol.3 , pp. 100
    • Orton, R.J.1    Adriaens, M.E.2    Gormand, A.3    Sturm, O.E.4    Kolch, W.5
  • 39
    • 58549083142 scopus 로고    scopus 로고
    • Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data
    • Chen WW, Schoeberl B, Jasper PJ, Niepel M, Nielsen UB, et al. (2009) Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data. Molecular Systems Biology 5: 239 Available: http://www.nature.com/doifinder/10.1038/msb.2008.74.
    • (2009) Molecular Systems Biology , vol.5 , pp. 239
    • Chen, W.W.1    Schoeberl, B.2    Jasper, P.J.3    Niepel, M.4    Nielsen, U.B.5
  • 40
    • 79952461747 scopus 로고    scopus 로고
    • A Dynamical Systems Model for Combinatorial Cancer Therapy Enhances Oncolytic Adenovirus Efficacy by MEK-Inhibition
    • doi:10.1371/journal.pcbi.1001085
    • Bagheri N, Shiina M, Lauffenburger DA, Korn WM, (2011) A Dynamical Systems Model for Combinatorial Cancer Therapy Enhances Oncolytic Adenovirus Efficacy by MEK-Inhibition. PLoS Computational Biology 7: e1001085 doi:10.1371/journal.pcbi.1001085.
    • (2011) PLoS Computational Biology , vol.7
    • Bagheri, N.1    Shiina, M.2    Lauffenburger, D.A.3    Korn, W.M.4
  • 41
    • 84857143182 scopus 로고    scopus 로고
    • Modeling mechanistic biological networks: An advanced Boolean approach
    • doi:10.1093/bioinformatics/btr697
    • Handorf T, Klipp E, (2011) Modeling mechanistic biological networks: An advanced Boolean approach. Bioinformatics 28: 557-563 doi:10.1093/bioinformatics/btr697.
    • (2011) Bioinformatics , vol.28 , pp. 557-563
    • Handorf, T.1    Klipp, E.2
  • 42
    • 84857114667 scopus 로고    scopus 로고
    • Dual specificity phosphatases 10 and 16 are positive regulators of EGF-stimulated ERK activity: Indirect regulation of ERK signals by JNK/p38 selective MAPK phosphatases
    • doi:10.1016/j.cellsig.2011.12.021
    • Finch AR, Caunt CJ, Perrett RM, Tsaneva-Atanasova K, McArdle CA, (2012) Dual specificity phosphatases 10 and 16 are positive regulators of EGF-stimulated ERK activity: Indirect regulation of ERK signals by JNK/p38 selective MAPK phosphatases. Cellular Signalling 24: 1002-1011 doi:10.1016/j.cellsig.2011.12.021.
    • (2012) Cellular Signalling , vol.24 , pp. 1002-1011
    • Finch, A.R.1    Caunt, C.J.2    Perrett, R.M.3    Tsaneva-Atanasova, K.4    McArdle, C.A.5
  • 43
    • 70049105859 scopus 로고    scopus 로고
    • The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data
    • doi:10.1371/journal.pcbi.1000438
    • Samaga R, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Klamt S, (2009) The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data. PLoS Computational Biology 5: e1000438 doi:10.1371/journal.pcbi.1000438.
    • (2009) PLoS Computational Biology , vol.5
    • Samaga, R.1    Saez-Rodriguez, J.2    Alexopoulos, L.G.3    Sorger, P.K.4    Klamt, S.5
  • 44
    • 33746889808 scopus 로고    scopus 로고
    • A comprehensive pathway map of epidermal growth factor receptor signaling
    • doi:10.1038/msb4100014
    • Oda K, Matsuoka Y, Funahashi A, Kitano H, (2005) A comprehensive pathway map of epidermal growth factor receptor signaling. Molecular Systems Biology 1: E1-E17 doi:10.1038/msb4100014.
    • (2005) Molecular Systems Biology , vol.1
    • Oda, K.1    Matsuoka, Y.2    Funahashi, A.3    Kitano, H.4
  • 45
    • 84866150897 scopus 로고    scopus 로고
    • Dynamics of p53 and NF-kappaB regulation in response to DNA damage and identification of target proteins suitable for therapeutic intervention
    • Poltz R, Naumann M, (2012) Dynamics of p53 and NF-kappaB regulation in response to DNA damage and identification of target proteins suitable for therapeutic intervention. BMC Systems Biology 6: 125.
    • (2012) BMC Systems Biology , vol.6 , pp. 125
    • Poltz, R.1    Naumann, M.2
  • 46
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan D, Weinberg RA, (2000) The hallmarks of cancer. Cell 100: 57-70.
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 47
    • 84862562436 scopus 로고    scopus 로고
    • Deregulation of Rab and Rab Effector Genes in Bladder Cancer
    • doi:10.1371/journal.pone.0039469
    • Ho JR, Chapeaublanc E, Kirkwood L, Nicolle R, Benhamou S, et al. (2012) Deregulation of Rab and Rab Effector Genes in Bladder Cancer. PLoS One 7: e39469 doi:10.1371/journal.pone.0039469.
    • (2012) PLoS One , vol.7
    • Ho, J.R.1    Chapeaublanc, E.2    Kirkwood, L.3    Nicolle, R.4    Benhamou, S.5
  • 49
    • 84873045850 scopus 로고    scopus 로고
    • Oncogenic FGFR3 gene fusions in bladder cancer
    • Williams SV, Hurst CD, Knowles MA, (2012) Oncogenic FGFR3 gene fusions in bladder cancer. Human Molecular Genetics 22 (4) (): 795-803 Available: http://www.hmg.oxfordjournals.org/cgi/doi/10.1093/hmg/dds486.
    • (2012) Human Molecular Genetics , vol.22 , Issue.4 , pp. 795-803
    • Williams, S.V.1    Hurst, C.D.2    Knowles, M.A.3
  • 50
    • 59249093638 scopus 로고    scopus 로고
    • Molecular Pathogenesis and Diagnostics of Bladder Cancer
    • doi:10.1146/annurev.pathol.4.110807.092230
    • Mitra AP, Cote RJ, (2009) Molecular Pathogenesis and Diagnostics of Bladder Cancer. Annual Review of Pathology: Mechanisms of Disease 4: 251-285 doi:10.1146/annurev.pathol.4.110807.092230.
    • (2009) Annual Review of Pathology: Mechanisms of Disease , vol.4 , pp. 251-285
    • Mitra, A.P.1    Cote, R.J.2
  • 51
    • 34247337239 scopus 로고    scopus 로고
    • Molecular Pathways in Invasive Bladder Cancer: New Insights Into Mechanisms, Progression, and Target Identification
    • doi:10.1200/JCO.2006.08.2073
    • Mitra AP, Datar RH, Cote RJ, (2006) Molecular Pathways in Invasive Bladder Cancer: New Insights Into Mechanisms, Progression, and Target Identification. Journal of Clinical Oncology 24: 5552-5564 doi:10.1200/JCO.2006.08.2073.
    • (2006) Journal of Clinical Oncology , vol.24 , pp. 5552-5564
    • Mitra, A.P.1    Datar, R.H.2    Cote, R.J.3
  • 52
    • 0032145569 scopus 로고    scopus 로고
    • Myc signaling via the ARF tumor suppressor regulates p53-dependent apoptosis and immortalization
    • Zindy F, Eischen CM, Randle DH, Kamijo T, Cleveland JL, et al. (1998) Myc signaling via the ARF tumor suppressor regulates p53-dependent apoptosis and immortalization. Genes Dev 12: 2424-2433.
    • (1998) Genes Dev , vol.12 , pp. 2424-2433
    • Zindy, F.1    Eischen, C.M.2    Randle, D.H.3    Kamijo, T.4    Cleveland, J.L.5
  • 53
    • 9444266171 scopus 로고    scopus 로고
    • CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
    • doi:10.1016/S1478-5382(03)02370-9
    • Funahashi A, Morohashi M, Kitano H, Tanimura N, (2003) CellDesigner: a process diagram editor for gene-regulatory and biochemical networks. BIOSILICO 1: 159-162 doi:10.1016/S1478-5382(03)02370-9.
    • (2003) BIOSILICO , vol.1 , pp. 159-162
    • Funahashi, A.1    Morohashi, M.2    Kitano, H.3    Tanimura, N.4
  • 54
    • 23444439817 scopus 로고    scopus 로고
    • Using process diagrams for the graphical representation of biological networks
    • doi:10.1038/nbt1111
    • Kitano H, Funahashi A, Matsuoka Y, Oda K, (2005) Using process diagrams for the graphical representation of biological networks. Nature Biotechnology 23: 961-966 doi:10.1038/nbt1111.
    • (2005) Nature Biotechnology , vol.23 , pp. 961-966
    • Kitano, H.1    Funahashi, A.2    Matsuoka, Y.3    Oda, K.4
  • 55
    • 47949099328 scopus 로고    scopus 로고
    • CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
    • doi:10.1109/JPROC.2008.925458
    • Funahashi A, Matsuoka Y, Jouraku A, Morohashi M, Kikuchi N, et al. (2008) CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks. Proceedings of the IEEE 96: 1254-1265 doi:10.1109/JPROC.2008.925458.
    • (2008) Proceedings of the IEEE , vol.96 , pp. 1254-1265
    • Funahashi, A.1    Matsuoka, Y.2    Jouraku, A.3    Morohashi, M.4    Kikuchi, N.5
  • 56
    • 67649771445 scopus 로고    scopus 로고
    • Logical modelling of regulatory networks with GINsim 2.3
    • doi:10.1016/j.biosystems.2009.04.008
    • Naldi A, Berenguier D, Fauré A, Lopez F, Thieffry D, et al. (2009) Logical modelling of regulatory networks with GINsim 2.3. Biosystems 97: 134-139 doi:10.1016/j.biosystems.2009.04.008.
    • (2009) Biosystems , vol.97 , pp. 134-139
    • Naldi, A.1    Berenguier, D.2    Fauré, A.3    Lopez, F.4    Thieffry, D.5
  • 57
    • 84855872610 scopus 로고    scopus 로고
    • Logical Modelling of Gene Regulatory Networks with GINsim
    • Chaouiya C, Naldi A, Thieffry D, (2012) Logical Modelling of Gene Regulatory Networks with GINsim. Methods in Molecular Biology 804: 463-479 Available: http://www.springerlink.com/index/10.1007/978-1-61779-361-5_23.
    • (2012) Methods in Molecular Biology , vol.804 , pp. 463-479
    • Chaouiya, C.1    Naldi, A.2    Thieffry, D.3
  • 58
    • 0025948178 scopus 로고
    • Regulatory networks seen as asynchronous automata: A logical description
    • doi:10.1016/S0022-5193(05)80350-9
    • Thomas R, (1991) Regulatory networks seen as asynchronous automata: A logical description. Journal of Theoretical Biology 153: 1-23 doi:10.1016/S0022-5193(05)80350-9.
    • (1991) Journal of Theoretical Biology , vol.153 , pp. 1-23
    • Thomas, R.1
  • 59
    • 0029267491 scopus 로고
    • Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
    • Thomas R, Thieffry D, Kaufman M, (1995) Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bulletin of Mathematical Biology 57: 247-276.
    • (1995) Bulletin of Mathematical Biology , vol.57 , pp. 247-276
    • Thomas, R.1    Thieffry, D.2    Kaufman, M.3
  • 60
    • 27544505428 scopus 로고    scopus 로고
    • Qualitative analysis of regulatory graphs: a computational tool based on a discrete formal framework
    • Chaouiya C, Remy E, Mossé B, Thieffry D, (2003) Qualitative analysis of regulatory graphs: a computational tool based on a discrete formal framework. Positive Systems pp. 830-832.
    • (2003) Positive Systems , pp. 830-832
    • Chaouiya, C.1    Remy, E.2    Mossé, B.3    Thieffry, D.4
  • 61
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
    • doi:10.1093/bioinformatics/btl210
    • Faure A, Naldi A, Chaouiya C, Thieffry D, (2006) Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. Bioinformatics 22: e124-e131 doi:10.1093/bioinformatics/btl210.
    • (2006) Bioinformatics , vol.22
    • Faure, A.1    Naldi, A.2    Chaouiya, C.3    Thieffry, D.4
  • 62
    • 38049150712 scopus 로고    scopus 로고
    • Decision diagrams for the representation and analysis of logical models of genetic networks
    • Naldi A, Thieffry D, Chaouiya C, (2007) Decision diagrams for the representation and analysis of logical models of genetic networks. Computational Methods in Systems Biology pp. 233-247 Available: http://www.springerlink.com/index/ww3402468t532578.pdf.
    • (2007) Computational Methods in Systems Biology , pp. 233-247
    • Naldi, A.1    Thieffry, D.2    Chaouiya, C.3
  • 63
    • 79953226975 scopus 로고    scopus 로고
    • Dynamically consistent reduction of logical regulatory graphs
    • doi:10.1016/j.tcs.2010.10.021
    • Naldi A, Remy E, Thieffry D, Chaouiya C, (2011) Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science 412: 2207-2218 doi:10.1016/j.tcs.2010.10.021.
    • (2011) Theoretical Computer Science , vol.412 , pp. 2207-2218
    • Naldi, A.1    Remy, E.2    Thieffry, D.3    Chaouiya, C.4
  • 64
    • 84880340067 scopus 로고    scopus 로고
    • Dynamical modeling and analysis of large cellular regulatory networks
    • doi:10.1063/1.4809783
    • Bérenguier D, Chaouiya C, Monteiro PT, Naldi A, Remy E, et al. (2013) Dynamical modeling and analysis of large cellular regulatory networks. Chaos 23: 025114 doi: 10.1063/1.4809783.
    • (2013) Chaos , vol.23 , pp. 025114
    • Bérenguier, D.1    Chaouiya, C.2    Monteiro, P.T.3    Naldi, A.4    Remy, E.5
  • 65
    • 0000915688 scopus 로고
    • On the relation between the logical structure of systems and their ability to generate multiple steady states or sustained oscillations
    • Thomas R, (1981) On the relation between the logical structure of systems and their ability to generate multiple steady states or sustained oscillations. Springer Series in Synergetics 9: 180-193.
    • (1981) Springer Series in Synergetics , vol.9 , pp. 180-193
    • Thomas, R.1
  • 66
    • 49549085003 scopus 로고    scopus 로고
    • Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
    • doi:10.1016/j.aam.2007.11.003
    • Remy É, Ruet P, Thieffry D, (2008) Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework. Advances in Applied Mathematics 41: 335-350 doi:10.1016/j.aam.2007.11.003.
    • (2008) Advances in Applied Mathematics , vol.41 , pp. 335-350
    • Remy, É.1    Ruet, P.2    Thieffry, D.3
  • 67
    • 34548327206 scopus 로고    scopus 로고
    • Dynamical roles of biological regulatory circuits
    • doi:10.1093/bib/bbm028
    • Thieffry D, (2007) Dynamical roles of biological regulatory circuits. Briefings in Bioinformatics 8: 220-225 doi:10.1093/bib/bbm028.
    • (2007) Briefings in Bioinformatics , vol.8 , pp. 220-225
    • Thieffry, D.1
  • 70
    • 63749105896 scopus 로고    scopus 로고
    • Mechanism of TGF-β signaling to growth arrest, apoptosis, and epithelial-mesenchymal transition
    • doi:10.1016/j.ceb.2009.01.021
    • Heldin C-H, Landström M, Moustakas A, (2009) Mechanism of TGF-β signaling to growth arrest, apoptosis, and epithelial-mesenchymal transition. Current Opinion in Cell Biology 21: 166-176 doi:10.1016/j.ceb.2009.01.021.
    • (2009) Current Opinion in Cell Biology , vol.21 , pp. 166-176
    • Heldin, C.-H.1    Landström, M.2    Moustakas, A.3
  • 71
    • 0034626708 scopus 로고    scopus 로고
    • MMAC1/PTEN inhibits cell growth and induces chemosensitivity to doxorubicin in human bladder cancer cells
    • doi:10.1038/sj.onc.1203918
    • Tanaka M, Koul D, Davies MA, Liebert M, Steck PA, et al. (2000) MMAC1/PTEN inhibits cell growth and induces chemosensitivity to doxorubicin in human bladder cancer cells. Oncogene 19: 5406-5412 doi:10.1038/sj.onc.1203918.
    • (2000) Oncogene , vol.19 , pp. 5406-5412
    • Tanaka, M.1    Koul, D.2    Davies, M.A.3    Liebert, M.4    Steck, P.A.5
  • 72
    • 0037023755 scopus 로고    scopus 로고
    • Signaling Networks That Link Cell Proliferation and Cell Fate
    • doi:10.1074/jbc.R100063200
    • Sears RC, (2002) Signaling Networks That Link Cell Proliferation and Cell Fate. Journal of Biological Chemistry 277: 11617-11620 doi:10.1074/jbc.R100063200.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 11617-11620
    • Sears, R.C.1
  • 73
    • 33747506490 scopus 로고    scopus 로고
    • Understanding urothelial carcinoma through cancer pathways
    • doi:10.1002/ijc.21852
    • Schulz WA, (2006) Understanding urothelial carcinoma through cancer pathways. International Journal of Cancer 119: 1513-1518 doi:10.1002/ijc.21852.
    • (2006) International Journal of Cancer , vol.119 , pp. 1513-1518
    • Schulz, W.A.1
  • 74
    • 0345743700 scopus 로고    scopus 로고
    • Defective lysosomal targeting of activated fibroblast growth factor receptor 3 in achondroplasia
    • doi:10.1073/pnas.2237184100
    • Cho JY, (2004) Defective lysosomal targeting of activated fibroblast growth factor receptor 3 in achondroplasia. Proceedings of the National Academy of Sciences 101: 609-614 doi:10.1073/pnas.2237184100.
    • (2004) Proceedings of the National Academy of Sciences , vol.101 , pp. 609-614
    • Cho, J.Y.1
  • 75
    • 9444287030 scopus 로고    scopus 로고
    • Common and Distinct Elements in Cellular Signaling via EGF and FGF Receptors
    • doi:10.1126/science.1105396
    • Schlessinger J, (2004) Common and Distinct Elements in Cellular Signaling via EGF and FGF Receptors. Science 306: 1506-1507 doi:10.1126/science.1105396.
    • (2004) Science , vol.306 , pp. 1506-1507
    • Schlessinger, J.1
  • 76
    • 0021336733 scopus 로고
    • C-kinase phosphorylates the epidermal growth factor receptor and reduces its epidermal growth factor-stimulated tyrosine protein kinase activity
    • Cochet C, Gill GN, Meisenhelder J, Cooper JA, Hunter T, (1984) C-kinase phosphorylates the epidermal growth factor receptor and reduces its epidermal growth factor-stimulated tyrosine protein kinase activity. Journal of Biological Chemistry 259: 2553-2558.
    • (1984) Journal of Biological Chemistry , vol.259 , pp. 2553-2558
    • Cochet, C.1    Gill, G.N.2    Meisenhelder, J.3    Cooper, J.A.4    Hunter, T.5
  • 78
    • 77950825394 scopus 로고    scopus 로고
    • Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement
    • doi:10.1371/journal.pcbi.1000702
    • Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, et al. (2010) Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement. PLoS Computational Biology 6: e1000702 doi:10.1371/journal.pcbi.1000702.
    • (2010) PLoS Computational Biology , vol.6
    • Calzone, L.1    Tournier, L.2    Fourquet, S.3    Thieffry, D.4    Zhivotovsky, B.5
  • 79
    • 84857688284 scopus 로고    scopus 로고
    • Sixteen years and counting: The current understanding of fibroblast growth factor receptor 3 (FGFR3) signaling in skeletal dysplasias
    • doi:10.1002/humu.21636
    • Foldynova-Trantirkova S, Wilcox WR, Krejci P, (2012) Sixteen years and counting: The current understanding of fibroblast growth factor receptor 3 (FGFR3) signaling in skeletal dysplasias. Human Mutation 33: 29-41 doi:10.1002/humu.21636.
    • (2012) Human Mutation , vol.33 , pp. 29-41
    • Foldynova-Trantirkova, S.1    Wilcox, W.R.2    Krejci, P.3
  • 80
    • 33646364795 scopus 로고    scopus 로고
    • Downregulation of Akt activity contributes to the growth arrest induced by FGF in chondrocytes
    • doi:10.1002/jcp.20620
    • Priore R, Dailey L, Basilico C, (2006) Downregulation of Akt activity contributes to the growth arrest induced by FGF in chondrocytes. J Cell Physiol 207: 800-808 doi:10.1002/jcp.20620.
    • (2006) J Cell Physiol , vol.207 , pp. 800-808
    • Priore, R.1    Dailey, L.2    Basilico, C.3
  • 81
    • 84865412261 scopus 로고    scopus 로고
    • Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm
    • doi:10.1186/1752-0509-6-116
    • Stoll G, Viara E, Barillot E, Calzone L, (2012) Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm. BMC Systems Biology 6: 116 doi:10.1186/1752-0509-6-116.
    • (2012) BMC Systems Biology , vol.6 , pp. 116
    • Stoll, G.1    Viara, E.2    Barillot, E.3    Calzone, L.4
  • 82
    • 0033848878 scopus 로고    scopus 로고
    • Integrating the MAP kinase signal into the G 1 phase cell cycle machinery
    • Roovers K, Assoian RK, (2000) Integrating the MAP kinase signal into the G 1 phase cell cycle machinery. Bioessays 22: 818-826.
    • (2000) Bioessays , vol.22 , pp. 818-826
    • Roovers, K.1    Assoian, R.K.2
  • 83
    • 32044469862 scopus 로고    scopus 로고
    • A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity
    • doi:10.1016/j.biosystems.2005.06.014
    • Blinov ML, Faeder JR, Goldstein B, Hlavacek WS, (2006) A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. Biosystems 83: 136-151 doi:10.1016/j.biosystems.2005.06.014.
    • (2006) Biosystems , vol.83 , pp. 136-151
    • Blinov, M.L.1    Faeder, J.R.2    Goldstein, B.3    Hlavacek, W.S.4
  • 85
    • 47149115711 scopus 로고    scopus 로고
    • From reaction models to influence graphs and back: a theorem
    • Fages F, Soliman S, (2008) From reaction models to influence graphs and back: a theorem. Formal Methods in Systems Biology 5054: 90-102.
    • (2008) Formal Methods in Systems Biology , vol.5054 , pp. 90-102
    • Fages, F.1    Soliman, S.2
  • 86
    • 33746191768 scopus 로고    scopus 로고
    • Inhibitors of the HSP90 Molecular Chaperone: Current Status
    • Elsevier, Available
    • Sharp S, Workman P (2006) Inhibitors of the HSP90 Molecular Chaperone: Current Status. Advances in Cancer Research. Elsevier, Vol. 95. pp. 323-348. Available: http://linkinghub.elsevier.com/retrieve/pii/S0065230X0695009X.
    • (2006) Advances in Cancer Research , vol.95 , pp. 323-348
    • Sharp, S.1    Workman, P.2
  • 88
    • 0141723393 scopus 로고    scopus 로고
    • Role of JNK in tumor development
    • Kennedy NJ, Davis RJ, (2003) Role of JNK in tumor development. Cell Cycle 2: 199-201.
    • (2003) Cell Cycle , vol.2 , pp. 199-201
    • Kennedy, N.J.1    Davis, R.J.2
  • 89
    • 0036544842 scopus 로고    scopus 로고
    • MAP kinases: from intracellular signals to physiology and disease
    • Schramek H, (2002) MAP kinases: from intracellular signals to physiology and disease. Physiology 17: 62-67.
    • (2002) Physiology , vol.17 , pp. 62-67
    • Schramek, H.1


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