Authentication of fish products by large-scale comparison of tandem mass spectra

Journal of Proteome Research

Volumn 12, Issue 11, 2013, Pages 5253-5259

  Wulff, Tune ^a,b   Nielsen, Michael Engelbrecht ^a   Deelder, André M ^b   Jessen, Flemming ^a   Palmblad, Magnus ^b  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

authentication; cod; DNA barcoding; fish; food; phylogeny; salmon; spectral libraries; tandem mass spectrometry

Indexed keywords

PROTEOME;

AMINO ACID SEQUENCE; ARTICLE; ATLANTIC COD; ATLANTIC SALMON; BROWN TROUT; CLARIAS GARIEPINUS; COMPARATIVE STUDY; DIGESTION; GENOME; LIQUID CHROMATOGRAPHY; MUSCLE TISSUE; NONHUMAN; ONCORHYNCHUS KETA; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; RAINBOW TROUT; SEA FOOD; SOLEA SOLEA; TANDEM MASS SPECTROMETRY;

ANIMALS; CHROMATOGRAPHY, LIQUID; CLUSTER ANALYSIS; DNA BARCODING, TAXONOMIC; FISHES; GENE LIBRARY; PHYLOGENY; PROTEOMICS; SEAFOOD; SPECIES SPECIFICITY; TANDEM MASS SPECTROMETRY;

EID: 84887215764     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr4006525     Document Type: Article

References (29)

1. Carrera, M.; Canas, B. Proteomics for the assessment of quality and safety of fishery products Food Res. Int. 2012, 10.1016/j.foodres.2012.10.027
2. Filonzi, L.; Chiesa, S.; Vaghi, M.; Marzano, F. N. Molecular barcoding reveals mislabelling of commercial fish products in Italy Food Res. Int. 2010, 43, 1383-1388
3. Miller, D.; Jessel, A.; Mariani, S. Seafood mislabelling: comparisons of two western European case studies assist in defining influencing factors, mechanisms and motives Fish Fish. 2012, 13, 345-358
4. Wong, E. H. K.; Hanner, R. H. DNA barcoding detects market substitution in North American seafood Food Res. Int. 2008, 41, 828-837
5. FAO. The State of World Fisheries and Aquaculture; Food and Agriculture Organization of the United Nations: Rome, 2012.
6. Rasmussen, R. S.; Morrissey, M. T. Application of DNA-Based Methods to Identify Fish and Seafood Substitution on the Commercial Market Compr. Rev. Food Sci. Food Saf. 2009, 8, 118-154
7. Wong, L. L.; Peatman, E.; Lu, J. G.; Kucuktas, H.; He, S. P.; Zhou, C. J.; Na-nakorn, U.; Liu, Z. J. DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment PLoS One 2011, 6
8. Carrera, M.; Canas, B.; Gallardo, J. M., Fish Authentication. In Proteomics in Foods-Principles and Applications; Toldrá, F.; Nollet, L. M. L., Eds.; Springer: New York, 2013; Vol. 2; pp 205-222.
9. Sentandreu, M. A.; Fraser, P. D.; Halket, J.; Patel, R.; Bramley, P. M. A proteomic-based approach for detection of chicken in meat mixes J. Proteome Res. 2010, 9, 3374-83
10. Scobbie, A. E.; Mackie, I. M. The Use of Sodium Dodecyl-Sulfate Polyacrylamide-Gel Electrophoresis in Fish Species Identification-a Procedure Suitable for Cooked and Raw Fish J. Sci. Food Agric. 1988, 44, 343-351
11. Pineiro, C.; Barros-Velazquez, J.; Perez-Martin, R. I.; Gallardo, J. M. Specific enzyme detection following isoelectric focusing as a complimentary tool for the differentiation of related Gadoid fish species Food Chem. 2000, 70, 241-245
12. Martinez, I.; Friis, T. J. Application of proteome analysis to seafood authentication Proteomics 2004, 4, 347-354
13. Rodrigues, P. M.; Silva, T. S.; Dias, J.; Jessen, F. PROTEOMICS in aquaculture: Applications and trends J. Proteomics 2012, 75, 4325-4345
14. Carrera, M.; Canas, B.; Pineiro, C.; Vazquez, J.; Gallardo, J. M. Identification of commercial hake and grenadier species by proteomic analysis of the parvalbumin fraction Proteomics 2006, 6, 5278-5287
15. Mazzeo, M. F.; De Giulio, B.; Guerriero, G.; Ciarcia, G.; Malorni, A.; Russo, G. L.; Siciliano, R. A. Fish Authentication by MALDI-TOF Mass Spectrometry J. Agric. Food Chem. 2008, 56, 11071-11076
16. Berrini, A.; Tepedino, V.; Borromeo, V.; Secchi, C. Identification of freshwater fish commercially labelled ″perch″ by isoelectric focusing and two-dimensional electrophoresis Food Chem. 2006, 96, 163-168
17. Carrera, M.; Canas, B.; Pineiro, C.; Vazquez, J.; Gallardo, J. M. De novo mass spectrometry sequencing and characterization of species-specific peptides from nucleoside diphosphate kinase B for the classification of commercial fish species belonging to the family Merlucciidae J. Proteome Res. 2007, 6, 3070-80
18. Carrera, M.; Canas, B.; Gallardo, J. M. Rapid direct detection of the major fish allergen, parvalbumin, by selected MS/MS ion monitoring mass spectrometry J. Proteomics 2012, 75, 3211-20
19. Ortea, I.; Canas, B.; Gallardo, J. M. Mass spectrometry characterization of species-specific peptides from arginine kinase for the identification of commercially relevant shrimp species J. Proteome Res. 2009, 8, 5356-62
20. Near, T. J.; Eytan, R. I.; Dornburg, A.; Kuhn, K. L.; Moore, J. A.; Davis, M. P.; Wainwright, P. C.; Friedman, M.; Smith, W. L. Resolution of ray-finned fish phylogeny and timing of diversification Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 13698-703
21. Palmblad, M.; Deelder, A. M. Molecular phylogenetics by direct comparison of tandem mass spectra Rapid Commun. Mass Spectrom. 2012, 26, 728-32
22. Palmblad, M.; van der Burgt, Y. E.; Mostovenko, E.; Dalebout, H.; Deelder, A. M. A novel mass spectrometry cluster for high-throughput quantitative proteomics J. Am. Soc. Mass Spectrom. 2010, 21, 1002-11
23. Mostovenko, E.; Deelder, A. M.; Palmblad, M. Protein expression dynamics during Escherichia coli glucose-lactose diauxie BMC Microbiol 2011, 11, 126
24. Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Mol. Biol. Evol. 2011, 28, 2731-9
25. Craig, R.; Beavis, R. C. TANDEM: matching proteins with tandem mass spectra Bioinformatics 2004, 20, 1466-7
26. Keller, A.; Eng, J.; Zhang, N.; Li, X. J.; Aebersold, R. A uniform proteomics MS/MS analysis platform utilizing open XML file formats Mol. Syst. Biol. 2005, 1, 1-8
27. Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 2002, 74, 5383-92
28. Crespi, B. J.; Fulton, M. J. Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny Mol. Phylogenet. Evol. 2004, 31, 658-79
29. Michelini, E.; Cevenini, L.; Mezzanotte, L.; Simoni, P.; Baraldini, M.; De Laude, L.; Roda, A. One-step triplex-polymerase chain reaction assay for the authentication of yellowfin (Thunnus albacares), bigeye (Thunnus obesus), and skipjack (Katsuwonus pelamis) tuna DNA from fresh, frozen, and canned tuna samples J. Agric. Food Chem. 2007, 55, 7638-47