메뉴 건너뛰기




Volumn 31, Issue 12, 2013, Pages 1497-1518

Novel G-quadruplex stabilizing agents: In-silico approach and dynamics

Author keywords

APBS; Docking; FEP; G quadruplex; MD simulation; WaterLOGSY NMR

Indexed keywords

3 [4 [[[3 [[4 [(2 CYANOETHYL)(METHYL)AMINO]BENZYLIDENE]AMINO]PROPYL]IMINO]METHYL](METHYL)ANILINO]PROPANENITRILE; ANTINEOPLASTIC AGENT; DOUBLE STRANDED DNA; GUANINE QUADRUPLEX; N'1 IMINO(2 PYRIDYL)METHYL 3,4,5 TRIMETHOXYBENZENE 1 CARBOHYDRAZIDE; UNCLASSIFIED DRUG;

EID: 84887012193     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2012.742246     Document Type: Article
Times cited : (17)

References (82)
  • 5
    • 5244304444 scopus 로고
    • Free energy perturbation (FEP) method. Bennett acceptance ratio method
    • Bennett, C. H. (1976). Free energy perturbation (FEP) method. Bennett acceptance ratio method. Journal of Computational Physics, 22, 245-268.
    • (1976) Journal of Computational Physics , vol.22 , pp. 245-268
    • Bennett, C.H.1
  • 6
    • 84860667839 scopus 로고    scopus 로고
    • Applications of saturation transfer difference NMR in biological systems
    • Bhunia, A., Bhattacharjya, S., & Chatterjee, S. (2012). Applications of saturation transfer difference NMR in biological systems. Drug Discovery Today, 17, 505-513.
    • (2012) Drug Discovery Today , vol.17 , pp. 505-513
    • Bhunia, A.1    Bhattacharjya, S.2    Chatterjee, S.3
  • 7
    • 79959903251 scopus 로고    scopus 로고
    • NMR structures and interactions of temporin-1Tl and temporin-1Tb with lipopolysaccharide micelles: Mechanistic insights into outer membrane permeabilization and synergistic activity
    • Bhunia, A., Saravanan, R., Mohanram, H., Mangoni, M. L., & Bhattacharjya, S. (2011). NMR structures and interactions of temporin-1Tl and temporin-1Tb with lipopolysaccharide micelles: Mechanistic insights into outer membrane permeabilization and synergistic activity. Journal of Biological Chemistry, 286, 24394-24406.
    • (2011) Journal of Biological Chemistry , vol.286 , pp. 24394-24406
    • Bhunia, A.1    Saravanan, R.2    Mohanram, H.3    Mangoni, M.L.4    Bhattacharjya, S.5
  • 9
    • 33751020853 scopus 로고    scopus 로고
    • Quadruplex DNA: Sequence, topology and structure
    • DOI 10.1093/nar/gkl655
    • Burge, S., Parkinson, G. N., Hazel, P., Todd, A. K., & Neidle, S. (2006). Quadruplex DNA: Sequence, topology and structure. Nucleic Acid Research, 34, 5402-5415. (Pubitemid 44742430)
    • (2006) Nucleic Acids Research , vol.34 , Issue.19 , pp. 5402-5415
    • Burge, S.1    Parkinson, G.N.2    Hazel, P.3    Todd, A.K.4    Neidle, S.5
  • 10
    • 13944272246 scopus 로고    scopus 로고
    • The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function
    • DOI 10.1158/0008-5472.CAN-04-2910
    • Burger, A. M., Dai, F., Schultes, C. M., Reszka, A. P., Moore, M. J., Double, J. A., & Neidle, S. (2005). The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function. Cancer Research, 65, 1489-1496. (Pubitemid 40270178)
    • (2005) Cancer Research , vol.65 , Issue.4 , pp. 1489-1496
    • Burger, A.M.1    Dai, F.2    Schultes, C.M.3    Reszka, A.P.4    Moore, M.J.5    Double, J.A.6    Neidle, S.7
  • 11
    • 0032671931 scopus 로고    scopus 로고
    • Unsupervised data base clustering based on daylight's fingerprint and Tanimoto similarity: A fast and automated way to cluster small and large data sets
    • Butina, D. (1999). Unsupervised data base clustering based on daylight?s fingerprint and Tanimoto similarity: A fast and automated way to cluster small and large data sets. Journal of Chemical Information and Computer Sciences, 39, 747-750.
    • (1999) Journal of Chemical Information and Computer Sciences , vol.39 , pp. 747-750
    • Butina, D.1
  • 12
    • 84857321023 scopus 로고    scopus 로고
    • Telomeres and cancer: From crisis to stability to crisis to stability
    • Campbell, P. J. (2012). Telomeres and cancer: From crisis to stability to crisis to stability. Cell, 148, 633-635.
    • (2012) Cell , vol.148 , pp. 633-635
    • Campbell, P.J.1
  • 13
    • 0842346436 scopus 로고    scopus 로고
    • Beginning to Understand the End of the Chromosome
    • DOI 10.1016/S0092-8674(04)00038-8
    • Cech, T. R. (2004). Beginning to understand the end of the chromosome. Cell, 116, 273-279. (Pubitemid 38167317)
    • (2004) Cell , vol.116 , Issue.2 , pp. 273-279
    • Cech, T.R.1
  • 14
    • 84862132900 scopus 로고    scopus 로고
    • Comparative analysis of different DNA binding drugs for leishmaniasis cure: A pharmacoinformatics approach
    • Chauhan, N., Vidyarthi, A. S., & Poddar, R. (2012). Comparative analysis of different DNA binding drugs for leishmaniasis cure: A pharmacoinformatics approach. Chemical Biology & Drug Design, 80, 54-63.
    • (2012) Chemical Biology & Drug Design , vol.80 , pp. 54-63
    • Chauhan, N.1    Vidyarthi, A.S.2    Poddar, R.3
  • 16
    • 34447543913 scopus 로고    scopus 로고
    • Cellular Senescence in Cancer and Aging
    • DOI 10.1016/j.cell.2007.07.003, PII S0092867407008902
    • Collado, M., Blasco, M. A., & Serrano, M. (2007). Cellular senescence in cancer and aging. Cell, 130, 223-233. (Pubitemid 47081143)
    • (2007) Cell , vol.130 , Issue.2 , pp. 223-233
    • Collado, M.1    Blasco, M.A.2    Serrano, M.3
  • 18
    • 34548550548 scopus 로고    scopus 로고
    • + solution: Insights into structure polymorphism of the human telomeric sequence
    • DOI 10.1093/nar/gkm522
    • Dai, J., Carver, M., Punchihewa, C., Jones, R. A., & Yang, D. (2007). Structure of the hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence. Nucleic Acid Research, 35, 4927-4940. (Pubitemid 47394180)
    • (2007) Nucleic Acids Research , vol.35 , Issue.15 , pp. 4927-4940
    • Dai, J.1    Carver, M.2    Punchihewa, C.3    Jones, R.A.4    Yang, D.5
  • 19
    • 34249846802 scopus 로고    scopus 로고
    • Structure of the intramolecular human telomeric G-quadruplex in potassium solution: A novel adenine triple formation
    • DOI 10.1093/nar/gkm009
    • Dai, J., Punchihewa, C., Ambrus, A., Chen, D., Jones, R. A., & Yang, D. (2007). Structure of the intramolecular human telomeric G-quadruplex in potassium solution: A novel adenine triple formation. Nucleic Acid Research, 35, 2440-2450. (Pubitemid 47073725)
    • (2007) Nucleic Acids Research , vol.35 , Issue.7 , pp. 2440-2450
    • Dai, J.1    Punchihewa, C.2    Ambrus, A.3    Chen, D.4    Jones, R.A.5    Yang, D.6
  • 21
    • 0035692794 scopus 로고    scopus 로고
    • WaterLOGSY as a method for primary NMR screening: Practical aspects and range of applicability
    • DOI 10.1023/A:1013302231549
    • Dalvit, C., Foqliatto, G., Stewart, A., Veronesi, M., & Stockman, B. (2001). WaterLOGSY as a method for primary NMR screening: practical aspects and range of applicability. Journal of Biomolecular NMR, 21, 349-359. (Pubitemid 34071389)
    • (2001) Journal of Biomolecular NMR , vol.21 , Issue.4 , pp. 349-359
    • Dalvit, C.1    Fogliatto, G.2    Stewart, A.3    Veronesi, M.4    Stockman, B.5
  • 22
    • 0033789206 scopus 로고    scopus 로고
    • Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water
    • Dalvit, C., Pevarello, P., Tato, M., Veronesi, M., Vulpetti, A., & Sundstrom, M. (2000). Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water. Journal of Biomolecular NMR, 18, 65-68.
    • (2000) Journal of Biomolecular NMR , vol.18 , pp. 65-68
    • Dalvit, C.1    Pevarello, P.2    Tato, M.3    Veronesi, M.4    Vulpetti, A.5    Sundstrom, M.6
  • 23
    • 33846823909 scopus 로고
    • Particle Mesh Ewald: An N Log(N) method for Ewald sums in large systems
    • Darden, T., York, D., & Pedersen, L. (1993). Particle Mesh Ewald: An N Log(N) method for Ewald sums in large systems. Journal of Chemical Physics, 98, 10089-10092.
    • (1993) Journal of Chemical Physics , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 24
    • 33646462913 scopus 로고    scopus 로고
    • Deconvoluting the structural and drug-recognition complexity of the G-Quadruplex-forming region upstream of the bcl-2 P1 promoter
    • Dexheimer, T. S., Sun, D., & Hurley, L. H. (2006). Deconvoluting the structural and drug-recognition complexity of the G-Quadruplex-forming region upstream of the bcl-2 P1 promoter. Journal of American Chemical Society, 128, 5404-5415.
    • (2006) Journal of American Chemical Society , vol.128 , pp. 5404-5415
    • Dexheimer, T.S.1    Sun, D.2    Hurley, L.H.3
  • 25
    • 70350220557 scopus 로고    scopus 로고
    • Anticancer activity of CX-3543: A direct inhibitor of rRNA biogenesis
    • Drygin, D., Jain, A. S., & O?Brien, S. (2009). Anticancer activity of CX-3543: A direct inhibitor of rRNA biogenesis. Cancer Research, 69, 7653-7661.
    • (2009) Cancer Research , vol.69 , pp. 7653-7661
    • Drygin, D.1    Jain, A.S.2    Obrien, S.3
  • 26
    • 75449098335 scopus 로고    scopus 로고
    • Cationic N-confused porphyrin derivative as a better molecule scaffold for G-quadruplex recognition
    • Du, Y., Zhang, D., Chen, W., Zhang, M., Zhou, Y., & Zhou, X. (2010). Cationic N-confused porphyrin derivative as a better molecule scaffold for G-quadruplex recognition. Bioorganic & Medicinal Chemistry, 18, 1111-1116.
    • (2010) Bioorganic & Medicinal Chemistry , vol.18 , pp. 1111-1116
    • Du, Y.1    Zhang, D.2    Chen, W.3    Zhang, M.4    Zhou, Y.5    Zhou, X.6
  • 27
    • 80053991807 scopus 로고    scopus 로고
    • All's well that ends well
    • Eisenstein, M. (2011). All?s well that ends well. Nature, 478, S13-S15.
    • (2011) Nature , vol.478
    • Eisenstein, M.1
  • 28
    • 0025600834 scopus 로고
    • Enhanced sampling in molecular dynamics: Use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin
    • Elber, R., & Karplus, M. (1990). Enhanced sampling in molecular dynamics: Use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin. Journal of American Chemical Society, 112, 9161-9175.
    • (1990) Journal of American Chemical Society , vol.112 , pp. 9161-9175
    • Elber, R.1    Karplus, M.2
  • 29
    • 0031226772 scopus 로고    scopus 로고
    • Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
    • Eldridge, M. D., Murray, C. W., Auton, T. R., Paolini, G. V., & Mee, R. P. (1997). Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. Journal of Computer-Aided Molecular Design, 11, 425445.
    • (1997) Journal of Computer-Aided Molecular Design , vol.11 , pp. 425445
    • Eldridge, M.D.1    Murray, C.W.2    Auton, T.R.3    Paolini, G.V.4    Mee, R.P.5
  • 30
    • 85117739192 scopus 로고    scopus 로고
    • Does telomere shortening count?
    • Engelhardt, M., & Finke, J. (2001). Does telomere shortening count? Blood, 98, 888-889.
    • (2001) Blood , vol.98 , pp. 888-889
    • Engelhardt, M.1    Finke, J.2
  • 31
  • 32
    • 34547941973 scopus 로고    scopus 로고
    • The common biology of cancer and ageing
    • DOI 10.1038/nature05985, PII NATURE05985
    • Finkel, T., Serrano, M., & Blasco, M. A. (2007). The common biology of cancer and ageing. Nature, 448, 767-774. (Pubitemid 47266334)
    • (2007) Nature , vol.448 , Issue.7155 , pp. 767-774
    • Finkel, T.1    Serrano, M.2    Blasco, M.A.3
  • 33
    • 23844540299 scopus 로고    scopus 로고
    • Molecular biology: Effects of telomerase and telomere length on epidermal stem cell behavior
    • DOI 10.1126/science.1115025
    • Flores, I., Cayuela, M. L., & Blasco, M. A. (2005). Effects of telomerase and telomere length on epidermal stem cell behavior. Science, 309, 1253-1256. (Pubitemid 41170921)
    • (2005) Science , vol.309 , Issue.5738 , pp. 1253-1256
    • Flores, I.1    Cayuela, M.L.2    Blasco, M.A.3
  • 35
    • 79959509289 scopus 로고    scopus 로고
    • Structure of human telomeric DNA in crowded solution
    • Heddi, B., & Phan, A. T. (2011). Structure of human telomeric DNA in crowded solution. Journal of American Chemical Society, 133, 9824-9833.
    • (2011) Journal of American Chemical Society , vol.133 , pp. 9824-9833
    • Heddi, B.1    Phan, A.T.2
  • 37
    • 84863116250 scopus 로고    scopus 로고
    • Antitelomerase therapy provokes ALT and mitochondrial adaptive mechanisms in cancer
    • Hu, J., Hwang, S. S., Liesa, M., Gan, B., Sahin, E., Jaskelioff, M., ? DePinho, R. A. (2012). Antitelomerase therapy provokes ALT and mitochondrial adaptive mechanisms in cancer. Cell, 148, 651-663.
    • (2012) Cell , vol.148 , pp. 651-663
    • Hu, J.1    Hwang, S.S.2    Liesa, M.3    Gan, B.4    Sahin, E.5    Jaskelioff, M.6    Depinho, R.A.7
  • 38
    • 0033083378 scopus 로고    scopus 로고
    • Effects of cationic porphyrins as G-quadruplex interactive agents in human tumor cells
    • Hu, J., Hwang, S. S., Liesa, M., Gan, B., Sahin, E., Jaskelioff, M., ? Hoff, D. V. (1999). Effects of cationic porphyrins as G-quadruplex interactive agents in human tumor cells. Cancer Research, 59, 639-644.
    • (1999) Cancer Research , vol.59 , pp. 639-644
    • Hu, J.1    Hwang, S.S.2    Liesa, M.3    Gan, B.4    Sahin, E.5    Jaskelioff, M.6    Hoff, D.V.7
  • 41
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
    • DOI 10.1021/ja9621760, PII S0002786396021762
    • Jorgensen, W. L., Maxwell, D. S., & Tirado-Rives, J. (1996). Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. Journal of American Chemical Society, 118, 11225-11236. (Pubitemid 26399746)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.45 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 42
    • 0037070575 scopus 로고    scopus 로고
    • Telomestatin, a potent telomerase inhibitor that interacts quite specificallywith the human telomericintramolecular G-quadruplex
    • Kim, M. Y., Vankayalapati, H., Shin-ya, K., Wierzba, K., & Hurley, L. H. (2002). Telomestatin, a potent telomerase inhibitor that interacts quite specificallywith the human telomericintramolecular G-quadruplex. Journal of American Chemical Society, 124, 2088-2089.
    • (2002) Journal of American Chemical Society , vol.124 , pp. 2088-2089
    • Kim, M.Y.1    Vankayalapati, H.2    Shin-Ya, K.3    Wierzba, K.4    Hurley, L.H.5
  • 43
    • 33646471468 scopus 로고
    • Statistical mechanics of fluid mixtures
    • Kirkwood, J. G. (1935). Statistical mechanics of fluid mixtures. Journal of Chemical Physics, 3, 300-313.
    • (1935) Journal of Chemical Physics , vol.3 , pp. 300-313
    • Kirkwood, J.G.1
  • 44
    • 7044239742 scopus 로고
    • Free energy calculations: Applications to chemical and biochemical phenomena
    • Kollman, P. (1993). Free energy calculations: Applications to chemical and biochemical phenomena. Chemical Review, 93, 2395-2417.
    • (1993) Chemical Review , vol.93 , pp. 2395-2417
    • Kollman, P.1
  • 45
    • 0001692244 scopus 로고    scopus 로고
    • Lambda-dynamics: A new approach to free energy calculations
    • Kong, X. J., & Brooks, C. L. (1996). Lambda-dynamics: A new approach to free energy calculations. Journal of Chemical Physics, 105, 2414-2423.
    • (1996) Journal of Chemical Physics , vol.105 , pp. 2414-2423
    • Kong, X.J.1    Brooks, C.L.2
  • 46
    • 0035871686 scopus 로고    scopus 로고
    • A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations
    • Krutler, V., Gunsteren, W. F. V., & Hnenberger, P. H. (2001). A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations. Journal of Computational Chemistry, 22, 501-508.
    • (2001) Journal of Computational Chemistry , vol.22 , pp. 501-508
    • Krutler, V.1    Gunsteren, W.F.V.2    Hnenberger, P.H.3
  • 47
    • 71149093724 scopus 로고    scopus 로고
    • How telomeres solve the end-protection problem
    • Lange, T. (2009). How telomeres solve the end-protection problem. Science, 326, 948-952.
    • (2009) Science , vol.326 , pp. 948-952
    • Lange, T.1
  • 48
    • 4344711355 scopus 로고    scopus 로고
    • Theory and applications of NMR-based screening in pharmaceutical research
    • Lepre, C. A., Moore, J. M., & Peng, J. W. (2004). Theory and applications of NMR-based screening in pharmaceutical research. Chemical Reviews, 104, 3641-3676.
    • (2004) Chemical Reviews , vol.104 , pp. 3641-3676
    • Lepre, C.A.1    Moore, J.M.2    Peng, J.W.3
  • 50
    • 84855761960 scopus 로고    scopus 로고
    • Disubstitutedquinazoline derivatives as a new type of highly selective ligands for telomeric Gquadruplex DNA
    • Li, Z., Tan, J. H., He, J. H., Long, Y., Ou, T. M., Li, D., ? Huang, Z. S. (2012). Disubstitutedquinazoline derivatives as a new type of highly selective ligands for telomeric Gquadruplex DNA. European Journal of Medicinal Chemistry, 47, 299-311.
    • (2012) European Journal of Medicinal Chemistry , vol.47 , pp. 299-311
    • Li, Z.1    Tan, J.H.2    He, J.H.3    Long, Y.4    Ou, T.M.5    Li, D.6    Huang, Z.S.7
  • 51
    • 67749124298 scopus 로고    scopus 로고
    • Structure of the human telomere in K+ solution: A stable basket-type G-quadruplex with only two G-tetrad layers
    • Lim, K. M., Amrane, S., Bouaziz, S., Xu, W., Mu, Y., Patel, D. J., ? Phan, A. T. (2009). Structure of the human telomere in K+ solution: A stable basket-type G-quadruplex with only two G-tetrad layers. Journal of American Chemical Society, 131, 4301-4309.
    • (2009) Journal of American Chemical Society , vol.131 , pp. 4301-4309
    • Lim, K.M.1    Amrane, S.2    Bouaziz, S.3    Xu, W.4    Mu, Y.5    Patel, D.J.6    Phan, A.T.7
  • 52
    • 48049088130 scopus 로고    scopus 로고
    • Nucleolar localization of TERT is unrelated to telomerase function in human cells
    • Lin, J., Jin, R., Zhang, B., Chen, H., Bai, Y. X., Yang, X., ? Huang, J. J. (2008). Nucleolar localization of TERT is unrelated to telomerase function in human cells. Journal of Cell Science, 121, 2169-2176.
    • (2008) Journal of Cell Science , vol.121 , pp. 2169-2176
    • Lin, J.1    Jin, R.2    Zhang, B.3    Chen, H.4    Bai, Y.X.5    Yang, X.6    Huang, J.J.7
  • 53
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • DOI 10.1016/S0169-409X(00)00129-0, PII S0169409X00001290
    • Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings1PII. Advanced Drug Delivery Reviews, 46, 3-26. (Pubitemid 33653411)
    • (2000) Advanced Drug Delivery Reviews , vol.46 , Issue.1-3 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 54
    • 33746600695 scopus 로고    scopus 로고
    • + solution: An intramolecular (3 + 1) G-quadruplex scaffold
    • DOI 10.1021/ja062791w
    • Luu, K. N., Phan, A. T., Kuryavyi, V., Lacroix, L., & Patel, D. J. (2008). Structure of the human telomere in K+ solution: An intramolecular (3+1) G-quadruplex scaffold. Journal of American Chemical Society, 128, 9963-9970. (Pubitemid 44147983)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.30 , pp. 9963-9970
    • Luu, K.N.1    Phan, A.T.2    Kuryavyi, V.3    Lacroix, L.4    Patel, D.J.5
  • 55
    • 79960697801 scopus 로고    scopus 로고
    • Molecular modeling of drugeDNA interactions: Virtual screening to structure-based design
    • Ma, D. L., Chan, D. S. H., Lee, P., Kwan, M. H. T., & Leugn, C. H. (2011). Molecular modeling of drugeDNA interactions: Virtual screening to structure-based design. Biochimie, 93, 1252-1266.
    • (2011) Biochimie , vol.93 , pp. 1252-1266
    • Ma, D.L.1    Chan, D.S.H.2    Lee, P.3    Kwan, M.H.T.4    Leugn, C.H.5
  • 57
    • 0033553844 scopus 로고    scopus 로고
    • Characterization of ligand binding by saturation transfer difference NMR spectroscopy
    • DOI 10.1002/(SICI)1521-3773(19990614)38:12<1784::AID-ANIE1784>3.0. CO;2-Q
    • Mayer, M., & Meyer, B. (1999). Characterization of ligand binding by saturation transfer difference NMR spectroscopy. Angewandte Chemie, 38, 1784-1788. (Pubitemid 29290947)
    • (1999) Angewandte Chemie - International Edition , vol.38 , Issue.12 , pp. 1784-1788
    • Mayer, M.1    Meyer, B.2
  • 58
    • 0032991111 scopus 로고    scopus 로고
    • Predicting relative binding affinities of non-peptide HIV protease inhibitors with free energy perturbation calculations
    • DOI 10.1023/A:1008044721715
    • McCarrick, M. A., & Kollman, P. A. (1999). Predicting relative binding affinities of non-peptide HIV protease inhibitors with free energy perturbation calculations. Journal of Computer Aided Molecular Design, 13, 109-121. (Pubitemid 29113102)
    • (1999) Journal of Computer-Aided Molecular Design , vol.13 , Issue.2 , pp. 109-121
    • McCarrick, M.A.1    Kollman, P.A.2
  • 60
    • 80055021268 scopus 로고    scopus 로고
    • Methods for investigating G-quadruplex DNA/ligand interactions
    • Murat, P., Singh, Y., & Defrancq, E. (2011). Methods for investigating G-quadruplex DNA/ligand interactions. Chemical Society Reviews, 40, 5293-5307.
    • (2011) Chemical Society Reviews , vol.40 , pp. 5293-5307
    • Murat, P.1    Singh, Y.2    Defrancq, E.3
  • 61
    • 0034578478 scopus 로고    scopus 로고
    • G-quadruplexes as therapeutic targets
    • Neidle, S., & Read, M. A. (2001). G-quadruplexes as therapeutic targets. Biopolymers, 56, 195-208.
    • (2001) Biopolymers , vol.56 , pp. 195-208
    • Neidle, S.1    Read, M.A.2
  • 62
    • 66549124907 scopus 로고    scopus 로고
    • The structures of quadruplex nucleic acids and their drug complexes
    • Neidle, S. (2009). The structures of quadruplex nucleic acids and their drug complexes. Current Opinion in Structural Biology, 19, 239-250.
    • (2009) Current Opinion in Structural Biology , vol.19 , pp. 239-250
    • Neidle, S.1
  • 63
    • 47649109401 scopus 로고    scopus 로고
    • Quadruplex DNA crystal structures and drug design
    • Neidle, S., & Parkinson, G. N. (2008). Quadruplex DNA crystal structures and drug design. Biochimie, 90, 1184-1196.
    • (2008) Biochimie , vol.90 , pp. 1184-1196
    • Neidle, S.1    Parkinson, G.N.2
  • 64
    • 16844375686 scopus 로고    scopus 로고
    • Chemical approaches to the discovery and development of cancer therapies
    • DOI 10.1038/nrc1587
    • Neidle, S., & Thurston, D. E. (2005). Chemical approaches to the discovery and development of cancer therapies. Nature Reviews, 5, 285-296. (Pubitemid 40488634)
    • (2005) Nature Reviews Cancer , vol.5 , Issue.4 , pp. 285-296
    • Neidle, S.1    Thurston, D.E.2
  • 70
    • 77952415408 scopus 로고    scopus 로고
    • Prediction of absolute solvation free energies using molecular dynamics free energy perturbation and the OPLS force field
    • Shivakumar, D., Williams, J., Wu, Y., Damm, W., Shelley, J., & Sherman, W. (2010). Prediction of absolute solvation free energies using molecular dynamics free energy perturbation and the OPLS force field. Journal of Chemical Theory and Computation, 6, 1509-1519.
    • (2010) Journal of Chemical Theory and Computation , vol.6 , pp. 1509-1519
    • Shivakumar, D.1    Williams, J.2    Wu, Y.3    Damm, W.4    Shelley, J.5    Sherman, W.6
  • 71
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c-myc
    • DOI 10.1093/nar/26.5.1167
    • Simonsson, T., Pecinka, P., & Kubista, M. (1998). DNA tetraplex formation in the control region of c-myc. Nucleic Acid Research, 26, 1167-1172. (Pubitemid 28291685)
    • (1998) Nucleic Acids Research , vol.26 , Issue.5 , pp. 1167-1172
    • Simonsson, T.1    Pecinka, P.2    Kubista, M.3
  • 73
    • 27244435211 scopus 로고    scopus 로고
    • Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents
    • DOI 10.1093/nar/gki917
    • Sun, D., Guo, K., Rusche, J. J., & Hurley, L. H. (2005). Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and Gquadruplex-interactive agents. Nucleic Acid Research, 33, 6070-6080. (Pubitemid 41742625)
    • (2005) Nucleic Acids Research , vol.33 , Issue.18 , pp. 6070-6080
    • Sun, D.1    Guo, K.2    Rusche, J.J.3    Hurley, L.H.4
  • 74
    • 0034885641 scopus 로고    scopus 로고
    • Targeting telomeres and telomerase
    • Sun, D., & Hurley, L. H. (2001). Targeting telomeres and telomerase. Methods in Enzymology, 340, 573-577.
    • (2001) Methods in Enzymology , vol.340 , pp. 573-577
    • Sun, D.1    Hurley, L.H.2
  • 75
    • 33748701981 scopus 로고    scopus 로고
    • Telomerase inhibition with a novel G-quadruplex-interactive agent, telomestatin: In vitro and in vivo studies in acute leukemia
    • DOI 10.1038/sj.onc.1209577, PII 1209577
    • Tauchi, T., Shin-ya, K., Sashida, G., Sumi, M., Okabe, S., Ohyashiki, J. H., & Ohyashiki, K. (2006). Telomerase inhibition with a novel G-quadruplex-interactive agent, telomestatin: in vitro and in vivo studies in acute leukemia. Oncogene, 25, 5719-5725. (Pubitemid 44435249)
    • (2006) Oncogene , vol.25 , Issue.42 , pp. 5719-5725
    • Tauchi, T.1    Shin-Ya, K.2    Sashida, G.3    Sumi, M.4    Okabe, S.5    Ohyashiki, J.H.6    Ohyashiki, K.7
  • 76
    • 17144385534 scopus 로고    scopus 로고
    • Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
    • DOI 10.1021/jm049092j
    • Triballeau, N., Acher, F., Brabet, I., Pin, J. P., & Bertrand, H. O. (2005). Virtual screening workflow development guided by the "Receiver Operating Characteristic" curve approach. application to high-throughput docking on metabotropic glutamate receptor subtype 4. Journal of Medicinal Chemistry, 48, 2534-2547. (Pubitemid 40520517)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.7 , pp. 2534-2547
    • Triballeau, N.1    Acher, F.2    Brabet, I.3    Pin, J.-P.4    Bertrand, H.-O.5
  • 77
    • 23944516595 scopus 로고    scopus 로고
    • Pharmacological telomerase inhibition can sensitize drug-resistant and drug-sensitive cells to chemotherapeutic treatment
    • DOI 10.1124/mol.105.011494
    • Ward, R. J., & Autexier, C. (2005). Pharmacological telomerase inhibition can sensitize drug-resistant and drug-sensitive cells to chemotherapeutic treatment. Molecular Pharmacology, 68, 779-786. (Pubitemid 41206032)
    • (2005) Molecular Pharmacology , vol.68 , Issue.3 , pp. 779-786
    • Ward, R.J.1    Autexier, C.2
  • 78
    • 0017100947 scopus 로고
    • Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
    • Warshel, A. P., & Levitt, M. (1976). Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme. Journal of Molecular Biology, 103, 227-249.
    • (1976) Journal of Molecular Biology , vol.103 , pp. 227-249
    • Warshel, A.P.1    Levitt, M.2
  • 79
    • 77956275000 scopus 로고    scopus 로고
    • Development of highly predictive 3D-QSAR CoMSIA models for anthraquinone and acridone derivatives as telomerase inhibitors targeting G-quadruplex DNA telomere
    • Zambre, V. P., Murumkar, P. R., Giridhar, R., & Yadav, M. R. (2010). Development of highly predictive 3D-QSAR CoMSIA models for anthraquinone and acridone derivatives as telomerase inhibitors targeting G-quadruplex DNA telomere. Journal of Molecular Graphics and Modelling, 29, 229-239.
    • (2010) Journal of Molecular Graphics and Modelling , vol.29 , pp. 229-239
    • Zambre, V.P.1    Murumkar, P.R.2    Giridhar, R.3    Yadav, M.R.4
  • 82
    • 36849122972 scopus 로고
    • High-temperature equation of state by a perturbation method. i Nonpolar gases
    • Zwanzig, R. W. (1954). High-temperature equation of state by a perturbation method. I Nonpolar gases.. Journal of Chemical Physics, 22, 1420-1426.
    • (1954) Journal of Chemical Physics , vol.22 , pp. 1420-1426
    • Zwanzig, R.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.