Structure of human telomeric DNA in crowded solution

Journal of the American Chemical Society

Volumn 133, Issue 25, 2011, Pages 9824-9833

  Heddi, Brahim ^a   Phan, Anh Tuân ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ANTICANCER TARGETS; CELLULAR ENVIRONMENT; CRYSTALLINE STATE; DIVERSE RANGE; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; G-RICH SEQUENCES; HIGHER ORDER; HUMAN TELOMERIC DNA; MOLECULAR CROWDING; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR LEVELS; NMR STRUCTURES; TELOMERES; TELOMERIC SEQUENCES;

CONFORMATIONS; CRYSTALLINE MATERIALS; DNA; MOLECULAR DYNAMICS;

DNA SEQUENCES;

GUANINE QUADRUPLEX; MACROGOL; POTASSIUM ION; WATER;

ARTICLE; DNA CONFORMATION; DNA SEQUENCE; DNA STRUCTURE; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; TELOMERE; X RAY CRYSTALLOGRAPHY;

DNA; G-QUADRUPLEXES; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; POTASSIUM; SOLUTIONS; TELOMERE;

EID: 79959509289     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja200786q     Document Type: Article

References (48)

1. de Lange, T. Science 2009, 326, 948-952
2. Makarov, V. L.; Hirose, Y.; Langmore, J. P. Cell 1997, 88, 657-666
3. Smith, F. W.; Feigon, J. Nature 1992, 356, 164-168
4. Davis, J. T. Angew. Chem., Int. Ed. 2004, 43, 668-698
5. Patel, D. J.; Phan, A. T.; Kuryavyi, V. Nucleic Acids Res. 2007, 35, 7429-7455
6. Neidle, S. Curr. Opin. Struct. Biol. 2009, 19, 239-250
7. Gellert, M.; Lipsett, M. N.; Davies, D. R. Proc. Natl. Acad. Sci. U.S.A. 1962, 48, 2013-2018
8. Paeschke, K.; Simonsson, T.; Postberg, J.; Rhodes, D.; Lipps, H. J. Nat. Struct. Mol. Biol. 2005, 12, 847-854
9. Maizels, N. Nat. Struct. Mol. Biol. 2006, 13, 1055-1059
10. Sun, D.; Thompson, B.; Cathers, B. E.; Salazar, M.; Kerwin, S. M.; Trent, J. O.; Jenkins, T. C.; Neidle, S.; Hurley, L. H. J. Med. Chem. 1997, 40, 2113-2116
11. Mergny, J. L.; Helene, C. Nat. Med. 1998, 4, 1366-1367
12. Zahler, A. M.; Williamson, J. R.; Cech, T. R.; Prescott, D. M. Nature 1991, 350, 718-720
13. Oganesian, L.; Moon, I. K.; Bryan, T. M.; Jarstfer, M. B. EMBO J. 2006, 25, 1148-1159
14. Kim, N. W.; Piatyszek, M. A.; Prowse, K. R.; Harley, C. B.; West, M. D.; Ho, P. L.; Coviello, G. M.; Wright, W. E.; Weinrich, S. L.; Shay, J. W. Science 1994, 266, 2011-2015
15. Phan, A. T. FEBS J. 2010, 277, 1107-1117
16. Wang, Y.; Patel, D. J. Structure 1993, 1, 263-282
17. Parkinson, G. N.; Lee, M. P.; Neidle, S. Nature 2002, 417, 876-880
18. Ambrus, A.; Chen, D.; Dai, J.; Bialis, T.; Jones, R. A.; Yang, D. Nucleic Acids Res. 2006, 34, 2723-2735
19. Luu, K. N.; Phan, A. T.; Kuryavyi, V.; Lacroix, L.; Patel, D. J. J. Am. Chem. Soc. 2006, 128, 9963-9970
20. Xu, Y.; Noguchi, Y.; Sugiyama, H. Bioorg. Med. Chem. 2006, 14, 5584-5591
21. Phan, A. T.; Luu, K. N.; Patel, D. J. Nucleic Acids Res. 2006, 34, 5715-5719
22. Lim, K. W.; Amrane, S.; Bouaziz, S.; Xu, W.; Mu, Y.; Patel, D. J.; Luu, K. N.; Phan, A. T. J. Am. Chem. Soc. 2009, 131, 4301-4309
23. Mendez-Bermudez, A.; Hills, M.; Pickett, H. A.; Phan, A. T.; Mergny, J. L.; Riou, J. F.; Royle, N. J. Nucleic Acids Res. 2009, 37, 6225-6238
24. Lim, K. W.; Alberti, P.; Guedin, A.; Lacroix, L.; Riou, J. F.; Royle, N. J.; Mergny, J. L.; Phan, A. T. Nucleic Acids Res. 2009, 37, 6239-6248
25. Zimmerman, S. B.; Trach, S. O. J. Mol. Biol. 1991, 222, 599-620
26. Ellis, R. J.; Minton, A. P. Nature 2003, 425, 27-28
27. Zhou, H. X.; Rivas, G.; Minton, A. P. Annu. Rev. Biophys. 2008, 37, 375-397
28. Miyoshi, D.; Sugimoto, N. Biochimie 2008, 90, 1040-1051
29. Miyoshi, D.; Nakao, A.; Sugimoto, N. Biochemistry 2002, 41, 15017-15024
30. Li, J.; Correia, J. J.; Wang, L.; Trent, J. O.; Chaires, J. B. Nucleic Acids Res. 2005, 33, 4649-4659
31. Miyoshi, D.; Karimata, H.; Sugimoto, N. J. Am. Chem. Soc. 2006, 128, 7957-7963
32. Vorlickova, M.; Bednarova, K.; Kejnovska, I.; Kypr, J. Biopolymers 2007, 86, 1-10
33. Xue, Y.; Kan, Z. Y.; Wang, Q.; Yao, Y.; Liu, J.; Hao, Y. H.; Tan, Z. J. Am. Chem. Soc. 2007, 129, 11185-11191
34. Balagurumoorthy, P.; Brahmachari, S. K.; Mohanty, D.; Bansal, M.; Sasisekharan, V. Nucleic Acids Res. 1992, 20, 4061-4067
35. Miller, M. C.; Buscaglia, R.; Chaires, J. B.; Lane, A. N.; Trent, J. O. J. Am. Chem. Soc. 2010, 132, 17105-17107
36. Phan, A. T.; Patel, D. J. J. Am. Chem. Soc. 2002, 124, 1160-1161
37. Huang, X.; Yu, P.; LeProust, E.; Gao, X. Nucleic Acids Res. 1997, 25, 4758-4763
38. Phan, A. T.; Gueron, M.; Leroy, J. L. Methods Enzymol. 2001, 338, 341-371
39. Phan, A. T.; Kuryavyi, V.; Luu, K. N.; Patel, D. J. Nucleic Acids Res. 2007, 35, 6517-6525
40. Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197
41. Martadinata, H.; Phan, A. T. J. Am. Chem. Soc. 2009, 131, 2570-2578
42. Plateau, P.; Gueron, M. J. Am. Chem. Soc. 1982, 104, 7310-7311
43. Schwieters, C. D.; Kuszewski, J. J.; Tjandra, N.; Clore, G. M. J. Magn. Reson. 2003, 160, 65-73
44. Case, D. A.; Cheatham, T. E., III; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M., Jr.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. J. Comput. Chem. 2005, 26, 1668-1688
45. DeLano, W. L. The PyMOL User's Manual; DeLano Scientific: Palo Alto, CA, 2002.
46. Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graphics 1996, 14, 33-38
47. Perez, A.; Marchan, I.; Svozil, D.; Sponer, J.; Cheatham, T. E., III; Laughton, C. A.; Orozco, M. Biophys. J. 2007, 92, 3817-3829
48. Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935