메뉴 건너뛰기




Volumn 45, Issue 25, 2006, Pages 7854-7860

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; ENZYMES; NUCLEAR MAGNETIC RESONANCE; SPECTROSCOPIC ANALYSIS; THERMODYNAMIC STABILITY; TUMORS;

EID: 33746908213     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0601510     Document Type: Article
Times cited : (361)

References (41)
  • 2
    • 0000378838 scopus 로고
    • The structure of crystals containing a hydrogen-bonded complex of 1-methylthymine and 9-methyladenine
    • Hoogsteen, K. (1959) The structure of crystals containing a hydrogen-bonded complex of 1-methylthymine and 9-methyladenine, Acta Crystallogr. 12, 822-823.
    • (1959) Acta Crystallogr. , vol.12 , pp. 822-823
    • Hoogsteen, K.1
  • 3
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs
    • Henderson, E., Hardin, C. C., Walk, S. K., Tinoco, I., Jr., and Blackburn, E. H. (1987) Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs, Cell 51, 899-908.
    • (1987) Cell , vol.51 , pp. 899-908
    • Henderson, E.1    Hardin, C.C.2    Walk, S.K.3    Tinoco Jr., I.4    Blackburn, E.H.5
  • 4
    • 0029081052 scopus 로고
    • Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex
    • Wang, Y., and Patel, D. J. (1995) Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex, J. Mol. Biol. 251, 76-94.
    • (1995) J. Mol. Biol. , vol.251 , pp. 76-94
    • Wang, Y.1    Patel, D.J.2
  • 5
    • 0028774726 scopus 로고
    • Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex
    • Wang, Y., and Patel, D. J. (1994) Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex, Structure 2, 1141-1156.
    • (1994) Structure , vol.2 , pp. 1141-1156
    • Wang, Y.1    Patel, D.J.2
  • 6
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen, D., and Gilbert, W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis, Nature 334, 364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 7
    • 0025736770 scopus 로고
    • Dimerization of human immunodeficiency virus (type 1) RNA: Stimulation by cations and possible mechanism
    • Marquet, R., Baudin, F., Gabus, C., Darlix, J. L., Mougel, M., Ehresmann, C., and Ehresmann, B. (1991) Dimerization of human immunodeficiency virus (type 1) RNA: Stimulation by cations and possible mechanism, Nucleic Acids Res. 19, 2349-2357.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2349-2357
    • Marquet, R.1    Baudin, F.2    Gabus, C.3    Darlix, J.L.4    Mougel, M.5    Ehresmann, C.6    Ehresmann, B.7
  • 8
    • 0027467617 scopus 로고
    • Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya, R. F., Schultze, P., Smith, F. W., Roe, J. A., and Feigon, J. (1993) Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution, Proc. Natl. Acad. Sci. U.S.A. 90, 3745-3749.
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 3745-3749
    • Macaya, R.F.1    Schultze, P.2    Smith, F.W.3    Roe, J.A.4    Feigon, J.5
  • 9
    • 1542297709 scopus 로고    scopus 로고
    • G-rich oligonucleotide inhibits the binding of a nuclear protein to the Ki-ras promoter and strongly reduces cell growth in human carcinoma pancreatic cells
    • Cogoi, S., Quadrifoglio, F., and Xodo, L. E. (2004) G-rich oligonucleotide inhibits the binding of a nuclear protein to the Ki-ras promoter and strongly reduces cell growth in human carcinoma pancreatic cells, Biochemistry 43, 2512-2523.
    • (2004) Biochemistry , vol.43 , pp. 2512-2523
    • Cogoi, S.1    Quadrifoglio, F.2    Xodo, L.E.3
  • 10
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c-myc
    • Simonsson, T., Pecinka, P., and Kubista, M. (1998) DNA tetraplex formation in the control region of c-myc, Nucleic Acids Res. 26, 1167-1172.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1167-1172
    • Simonsson, T.1    Pecinka, P.2    Kubista, M.3
  • 11
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain, A., Grand, C. L., Bearss, D. J., and Hurley, L. H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription, Proc. Natl. Acad. Sci. U.S.A. 99, 11593-11598.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 12
    • 27244435211 scopus 로고    scopus 로고
    • Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents
    • Sun, D., Guo, K., Rusche, J. J., and Hurley, L. H. (2005) Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents, Nucleic Acids Res. 33, 6070-6080.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6070-6080
    • Sun, D.1    Guo, K.2    Rusche, J.J.3    Hurley, L.H.4
  • 13
    • 28944442742 scopus 로고    scopus 로고
    • Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1α promoter
    • De Armond, R., Wood, S., Sun, D., Hurley, L. H., and Ebbinghaus, S. W. (2005) Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1α promoter, Biochemistry 44, 16341-16350.
    • (2005) Biochemistry , vol.44 , pp. 16341-16350
    • De Armond, R.1    Wood, S.2    Sun, D.3    Hurley, L.H.4    Ebbinghaus, S.W.5
  • 14
    • 0028146763 scopus 로고
    • Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: A circular dichroism study
    • Giraldo, R., Suzuki, M., Chapman, L., and Rhodes, D. (1994) Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: A circular dichroism study, Proc. Natl. Acad. Sci. U.S.A. 91, 7658-7662.
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 7658-7662
    • Giraldo, R.1    Suzuki, M.2    Chapman, L.3    Rhodes, D.4
  • 15
    • 0028246339 scopus 로고
    • The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA
    • Giraldo, R., and Rhodes, D. (1994) The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA, EMBO J. 13, 2411-2420.
    • (1994) EMBO J. , vol.13 , pp. 2411-2420
    • Giraldo, R.1    Rhodes, D.2
  • 16
    • 0032477893 scopus 로고    scopus 로고
    • Structural basis of DNA recognition and mechanism of quadruplex formation by the β subunit of the Oxytricha telomere binding protein
    • Laporte, L., and Thomas, G. J., Jr. (1998) Structural basis of DNA recognition and mechanism of quadruplex formation by the β subunit of the Oxytricha telomere binding protein, Biochemistry 37, 1327-1335.
    • (1998) Biochemistry , vol.37 , pp. 1327-1335
    • Laporte, L.1    Thomas Jr., G.J.2
  • 17
    • 27144451010 scopus 로고    scopus 로고
    • Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo
    • Paeschke, K., Simonsson, T., Postberg, J., Rhodes, D., and Lipps, H. J. (2005) Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo, Nat. Struct. Mol. Biol. 12, 847-854.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 847-854
    • Paeschke, K.1    Simonsson, T.2    Postberg, J.3    Rhodes, D.4    Lipps, H.J.5
  • 18
    • 0038313171 scopus 로고    scopus 로고
    • Identification of non-telomeric G4-DNA binding proteins in human, E. coli, yeast, and Arabidopsis
    • Kang, S. G., and Henderson, E. (2002) Identification of non-telomeric G4-DNA binding proteins in human, E. coli, yeast, and Arabidopsis, Mol. Cells 14, 404-410.
    • (2002) Mol. Cells , vol.14 , pp. 404-410
    • Kang, S.G.1    Henderson, E.2
  • 19
    • 3042785608 scopus 로고    scopus 로고
    • Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA
    • Duquette, M. L., Handa, P., Vincent, J. A., Taylor, A. F., and Maizels, N. (2004) Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA, Genes Dev. 18, 1618-1629.
    • (2004) Genes Dev. , vol.18 , pp. 1618-1629
    • Duquette, M.L.1    Handa, P.2    Vincent, J.A.3    Taylor, A.F.4    Maizels, N.5
  • 21
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny, J. L., Phan, A. T., and Lacroix, L. (1998) Following G-quartet formation by UV-spectroscopy, FEBS Lett. 435, 74-78.
    • (1998) FEBS Lett. , vol.435 , pp. 74-78
    • Mergny, J.L.1    Phan, A.T.2    Lacroix, L.3
  • 22
    • 14844353406 scopus 로고    scopus 로고
    • The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
    • Sacca, B., Lacroix, L., and Mergny, J. L. (2005) The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides, Nucleic Acids Res. 33, 1182-1192.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1182-1192
    • Sacca, B.1    Lacroix, L.2    Mergny, J.L.3
  • 23
    • 27144440078 scopus 로고    scopus 로고
    • Thermal difference spectra: A specific signature for nucleic acid structures
    • Mergny, J. L., Li, J., Lacroix, L., Amrane, S., and Chaires, J. B. (2005) Thermal difference spectra: A specific signature for nucleic acid structures, Nucleic Acids Res. 33, e138.
    • (2005) Nucleic Acids Res. , vol.33
    • Mergny, J.L.1    Li, J.2    Lacroix, L.3    Amrane, S.4    Chaires, J.B.5
  • 24
    • 0035200324 scopus 로고    scopus 로고
    • Transcriptional consequences of topoisomerase inhibition
    • Collins, I., Weber, A., and Levens, D. (2001) Transcriptional consequences of topoisomerase inhibition, Mol. Cell. Biol. 21, 8437-8451.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 8437-8451
    • Collins, I.1    Weber, A.2    Levens, D.3
  • 27
    • 0036346218 scopus 로고    scopus 로고
    • Cyclic AMP in ovarian cancer cells both inhibits proliferation and increases c-KIT expression
    • Shaw, T. J., Keszthelyi, E. J., Tonary, A. M., Cada, M., and Vanderhyden, B. C. (2002) Cyclic AMP in ovarian cancer cells both inhibits proliferation and increases c-KIT expression, Exp. Cell Res. 273, 95-106.
    • (2002) Exp. Cell Res. , vol.273 , pp. 95-106
    • Shaw, T.J.1    Keszthelyi, E.J.2    Tonary, A.M.3    Cada, M.4    Vanderhyden, B.C.5
  • 28
    • 0033372634 scopus 로고    scopus 로고
    • C-kit gene abnormalities in gastrointestinal stromal tumors (tumors of interstitial cells of Cajal)
    • Sakurai, S., Fukasawa, T., Chong, J. M., Tanaka, A., Fukayama, M. (1999) C-kit gene abnormalities in gastrointestinal stromal tumors (tumors of interstitial cells of Cajal), Jpn. J. Cancer Res. 90, 1321-1328.
    • (1999) Jpn. J. Cancer Res. , vol.90 , pp. 1321-1328
    • Sakurai, S.1    Fukasawa, T.2    Chong, J.M.3    Tanaka, A.4    Fukayama, M.5
  • 29
    • 0027494480 scopus 로고
    • Characterization of the promoter region of the human c-kit protooncogene
    • Yamamoto, K., Tojo, A., Aoki, N., and Shibuya, M. (1993) Characterization of the promoter region of the human c-kit protooncogene, Jpn. J. Cancer Res. 84, 1136-1144.
    • (1993) Jpn. J. Cancer Res. , vol.84 , pp. 1136-1144
    • Yamamoto, K.1    Tojo, A.2    Aoki, N.3    Shibuya, M.4
  • 30
  • 31
    • 0032400851 scopus 로고    scopus 로고
    • Selective Sp1 binding is critical for maximal activity of the human c-kit promoter
    • Park, G. H., Plummer, H. K., III, and Krystal, G. W. (1998) Selective Sp1 binding is critical for maximal activity of the human c-kit promoter, Blood 92, 4138-4149.
    • (1998) Blood , vol.92 , pp. 4138-4149
    • Park, G.H.1    Plummer III, H.K.2    Krystal, G.W.3
  • 32
    • 0029851211 scopus 로고    scopus 로고
    • Complex regulation of human c-kit transcription by promoter repressors, activators, and specific myb elements
    • Vandenbark, G. R., Chen, Y., Friday, E., Pavlik, K., Anthony, B., deCastro, C., and Kaufman, R. E. (1996) Complex regulation of human c-kit transcription by promoter repressors, activators, and specific myb elements, Cell Growth Differ. 7, 1383-1392.
    • (1996) Cell Growth Differ. , vol.7 , pp. 1383-1392
    • Vandenbark, G.R.1    Chen, Y.2    Friday, E.3    Pavlik, K.4    Anthony, B.5    Decastro, C.6    Kaufman, R.E.7
  • 33
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert, J. L., and Balasubramanian, S. (2005) Prevalence of quadruplexes in the human genome, Nucleic Acids Res. 33, 2908-2916.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 34
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd, A. K., Johnston, M., and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA, Nucleic Acids Res. 33, 2901-2907.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 36
    • 0345184913 scopus 로고    scopus 로고
    • Opportunities and challenges in the development of kinase inhibitor therapy for cancer
    • Sawyers, C. L. (2003) Opportunities and challenges in the development of kinase inhibitor therapy for cancer, Genes Dev. 17, 2998-3010.
    • (2003) Genes Dev. , vol.17 , pp. 2998-3010
    • Sawyers, C.L.1
  • 38
    • 3242666778 scopus 로고    scopus 로고
    • Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter
    • Phan, A. T., Modi, Y. S., and Patel, D. J. (2004) Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter, J. Am. Chem. Soc. 126, 8710-8716.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 8710-8716
    • Phan, A.T.1    Modi, Y.S.2    Patel, D.J.3
  • 39
    • 13644267721 scopus 로고    scopus 로고
    • Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization
    • Ambrus, A., Chen, D., Dai, J., Jones, R. A., and Yang, D. (2005) Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization, Biochemistry 44, 2048-2058.
    • (2005) Biochemistry , vol.44 , pp. 2048-2058
    • Ambrus, A.1    Chen, D.2    Dai, J.3    Jones, R.A.4    Yang, D.5
  • 40
    • 0036849582 scopus 로고    scopus 로고
    • Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix
    • Phan, A. T., and Mergny, J. L. (2002) Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix, Nucleic Acids Res. 30, 4618-4625.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4618-4625
    • Phan, A.T.1    Mergny, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.