Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora

Applied and Environmental Microbiology

Volumn 73, Issue 4, 2007, Pages 1146-1152

  Jensen, Paul R ^a,b   Williams, Philip G ^a   Oh, Dong Chan ^a   Zeigler, Lisa ^a   Fenical, William ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOMYCETE SPECIES; GENE ACQUISITION; PHENOTYPIC TRAITS; PHYLOGENETIC ANALYSIS;

BACTERIA; BIODIVERSITY; BIOSYNTHESIS; GENE TRANSFER; MARINE BIOLOGY; METABOLITES;

GENES;

ARENICOLIDE A; CHEMICAL COMPOUND; CYANOSPORASIDE A; CYCLOMARIN A; RIFAMYCIN; SALINIKETAL; SALINISPYRONE A; SALINOSPORAMIDE A; SPOROLIDE A; STAUROSPORINE; UNCLASSIFIED DRUG;

BACTERIUM; GENE TRANSFER; MARINE ECOSYSTEM; MICROBIAL COMMUNITY; PHENOTYPE; PHYLOGENETICS; SECONDARY METABOLITE;

ACTINOBACTERIA; ARTICLE; BIOLOGICAL ACTIVITY; CHEMICAL STRUCTURE; FERMENTATION; GENE PROBE; HORIZONTAL GENE TRANSFER; MARINE BACTERIUM; METABOLITE; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; SPECIES DIFFERENCE;

MICROMONOSPORACEAE; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SEAWATER; SPECIES SPECIFICITY;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); SALINISPORA;

EID: 33847186292     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01891-06     Document Type: Article

References (40)

1. Bentley, S. D., K. F. Chater, A.-M. Cerden̄o-Tárranga, G. L. Challis, N. R. Thompson, K. D. James, et al. 2002. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147.
2. Bentley, S. D., and J. Parkhill. 2004. Comparative genomic structure of prokaryotes. Annu. Rev. Genet. 38:771-791.
3. Bérdy, J. 2005. Bioactive microbial metabolites. J. Antibiot. 58:1-26.
4. Buchanan, G. O., P. G. Williams, R. H. Feling, C. A. Kauffman, P. R. Jensen, and W. Fenical. 2005. Sporolides A and B: structurally unprecedented halogenated macrolides from the marine actinomycete Salinispora tropica. Org. Lett. 7:2731-2734.
5. Chalis, G. L., and D. A. Hopwood. 2003. Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc. Natl. Acad. Sci. USA 100:14555-14561.
6. Cohan, F. M. 2002. What are bacterial species? Annu. Rev. Microbiol. 56:457-487.
7. Davies, J. 2006. Are antibiotics naturally antibiotics? J. Ind. Microbiol. Biotechnol. 33:496-499.
8. Doolittle, W. F. 1999. Phylogenetic classification and the universal tree of life. Science 284:2124-2128.
9. Egan, S., P. Wiener, D. Kallifidas, and E. M. H. Wellington. 2001. Phylogeny of Streptomyces species and evidence for horizontal transfer of entire and partial antibiotic gene clusters. Antonie Leeuwenhoek 79:127-133.
10. Feling, R. H., G. O. Buchanan, T. J. Mincer, C. A. Kauffman, P. R. Jensen, and W. Fenical. 2003. Salinosporamide A: a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew. Chem. Int. Ed. 42:355-357.
11. Firn, R. D., and C. G. Jones. 2000. The evolution of secondary metabolism-a unifying model. Mol. Microbiol. 37:989-994.
12. Floss, H. G., and T. W. Yu. 2005. Rifamycin-mode of action, resistance, and biosynthesis. Chem. Rev. 105:621-632.
13. Hacker, J., and J. B. Kaper. 2000. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 54:641-679.
14. Jain, R., M. C. Rivera, and J. A. Lake. 1999. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. USA 96:3801-3806.
15. Jensen, P. R., R. Dwight, and W. Fenical. 1991. Distribution of actinomycetes in near-shore tropical marine sediments. Appl. Environ. Microbiol. 57:1102-1108.
16. Jensen, P. R., E. Gontang, C. Mafnas, T. J. Mincer, and W. Fenical. 2005. Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. Environ. Microbiol. 7:1039-1048.
17. Jensen, P. R., and C. Mafnas. 2006. Biogeography of the actinomycete genus Salinispora. Environ. Microbiol. 8:1881-1888.
18. Kim, T. K., Garson, M. J., and J. A. Fuerst. 2005. Marine actinomycetes related to the "Salinospora" group from the Great Barrier Reef sponge Pseudoceratina clavata. Environ. Microbiol. 7:509-518.
19. Kim, T. K., A. K. Hewavitharana, P. N. Shaw, and J. A. Fuerst. 2006. Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction. Appl. Environ. Microbiol. 72:2118-2125.
20. Kinashi, H., M. Shimaji, and A. Sakai. 1987. Giant linear plasmids in Streptomyces which code for antibiotic biosynthesis. Nature 328:454-456.
21. Koonin, E. V., K. S. Makarova, and L. Aravind. 2001. Horizontal gene transfer in prokaryotes: quantification and classification. Annu. Rev. Microbiol. 55:709-742.
22. Larsen, T. O., J. Smedsgaard, K. F. Nielsen, M. E. Hansen, and J. C. Frisvad. 2005. Phenotypic taxonomy and metabolite profiling in microbial drug discovery. Nat. Prod. Rep. 22:672-695.
23. Lawrence, J. G. 1997. Selfish operons and speciation by gene transfer. Trends Microbiol. 5:355-359.
24. Maiden, M. C. J., B. Malorny, and M. Achtman. 1996. A global gene pool in the neisseriae. Mol. Microbiol. 21:1297-1298.
25. Maldonado, L., W. Fenical, M. Goodfellow, P. R. Jensen, C. K. Kauffman, and A. C. Ward. 2005. Salinispora gen nov., sp. nov., Salinispora arenicola sp. nov., and S. tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int. J. Syst. Appl. Microbiol. 55:1759-1766.
26. Mao, Y., M. Varogula, and D. H. Sherman. 1999. Genetic localization and molecular characterization of two key genes (mitAB) required for biosynthesis of the antitumor antibiotic mitomycin C. J. Bacteriol. 181:2199-2208.
27. Mincer, T. J., W. Fenical, and P. R. Jensen. 2005. Cultured and culture-independent diversity within the obligate marine actinomycete genus Salinispora. Appl. Environ. Microbiol. 71:7019-7028.
28. Mincer, T. J., P. R. Jensen, C. A. Kauffman, and W. Fenical. 2002. Wide-spread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl. Environ. Microbiol. 68:5005-5011.
29. Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial evolution. Nature 405:299-304.
30. Ochman, H., E. Lerat, and V. Daubin. 2005. Examining bacterial species under the specter of gene transfer and exchange. Proc. Natl. Acad. Sci. USA 102:6595-6599.
31. Oh, D.-C., P. G. Williams, C. A. Kauffman, P. R. Jensen, and W. Fenical. 2006. Cyanosporasides A and B, cyano- and chloro-cyclopenta [a]indene glycosides from the marine actinomycete "Salinispora pacifica." Org. Lett. 8:1021-1024.
32. Okada, M., I. Sata, S. J. Cho, H. Iwata, T. Nishio, D. Dubmau, and Y. Sakagami. 2005. Structure of the Bacillus subtilis quorum-sensing peptide pheromone ComX. Nat. Chem. Biol. 1:23-24.
33. Omura, S., H. Ikeda, J. Ishikawa, A. Hanamoto, C. Takahashi, et al. 2001. Genome sequencing of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc. Natl. Acad. Sci. USA 98:12215-12220.
34. Omura, S., Y. Sasaki, Y. Iwai, and H. Takeshima. 1995. Staurosporine, a potentially important gift from a microorganism. J. Antibiot. 48:535-548.
35. Pojet, F., L. Shu-Ming, and L. Heide. 2002. Molecular cloning and sequence analysis of the chlorobiocin biosynthetic gene cluster: new insights into the biosynthesis of aminocoumarin antibiotics. Microbiology 148:3901-3911.
36. Renner, M. K., Y.-C. Shen, X.-C. Cheng, P. R. Jensen, W. Frankmoelle, C. A. Kauffman, W. Fenical, E. Lobkovsky, and J. Clardy. 1999. Cyclomarins A-C, new antiinflammatory cyclic peptides produced by a marine bacterium (Streptomyces sp.). J. Am. Chem. Soc. 121:11273-11276.
37. Swofford, D. L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, MA.
38. Waksman, S. A., and E. Bugie. 1943. Strain specificity and production of antibiotic substances. Proc. Natl. Acad. Sci. USA 29:282-288.
39. Winkelmann, G. 2002. Microbial siderophore-mediated transport. Biochem. Soc. Trans. 30:691-696.
40. Zahner, H. 1979. What are secondary metabolites? Folia Microbiol. 24:435-443.