Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov.

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 3, 2000, Pages 1315-1323

  Lee, Soon Dong ^a   Kim, Eun Suk ^a   Roe, Jung Hye ^a   Kim, Jae Heon ^b   Kang, Sa Ouk ^a   Hah, Yung Chil ^a  

^a Seoul National University   (South Korea)

^b Dankook University   (South Korea)

Author keywords

Phylogeny; Saccharothrix albidocapillata comb. nov.; Saccharothrix violacea sp. nov.; Soil bacteria

Indexed keywords

DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; RHAMNOSE; RIBOSOME DNA; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIUM ISOLATION; CELL COMPOSITION; CONTROLLED STUDY; MEMBRANE STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SACCHAROTHRIX ALBIDOCAPILLATA; SACCHAROTHRIX VIOLACEA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TAXONOMY;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); LENTZEA; LENTZEA ALBIDOCAPILLATA; LENTZEA VIOLACEA; PROKARYOTA; PSEUDONOCARDIACEAE; SACCHAROTHRIX; SACCHAROTHRIX ALBIDOCAPILLATA; SACCHAROTHRIX VIOLACEA; UNCULTURED ACTINOMYCETE;

EID: 0343674730     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-3-1315     Document Type: Article

References (40)

1. Brosius, J., Palmer, J. L., Kennedy, J. P. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75, 4801-4805.
2. Collins, M. D., Goodfellow, M. & Minnikin, D. E. M. (1982). Polar lipid composition in the classification of Arthrobacter and Microbacterium. FEMS Microbiol Lett 15, 299-302.
3. Embley, T. M., Smida, J. & Stackebrandt, E. (1988). The phylogeny of mycolateless wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. Syst Appl Microbiol 11, 44-52.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Department of Genetics, University of Washington, Seattle.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardia strain. Int J Syst Bacteriol 24, 54-63.
7. Grund, E. & Kroppenstedt, R. M. (1989). Transfer of five Nocardiopsis species to the genus Saccharothrix Labeda et al. 1984. Syst Appl Microbiol 10, 267-274.
8. Hasegawa, T., Lechevalier, M. P. & Lechevalier, H. A. (1978). A new genus of the Actinomycetales, Actinosynnema gen. nov. Int J Syst Bacteriol 28, 304-310.
9. Hopwood, D. A., Bibb, M. J., Chater, K. F. & 7 other authors (1985). Genetic Manipulation of Streptomyces: a Laboratory Manual. Norwich : John Innes Foundation.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York : Academic Press.
11. Korn-Wendisch, F., Rainey, F., Kroppenstedt, R. M., Kempf, A., Majazza, A., Kutzner, H. J. & Stackebrandt E. (1995). Thermocrispum gen. nov., a new genus of the order Actinomycetales, and description of Thermocrispum municipale sp. nov. and Thermocrispum agreste sp. nov. Int J Syst Bacteriol 45, 67-77.
12. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London : Academic Press.
13. Labeda, D. P. (1986). Transfer of "Nocardia aerocolonigensis" (Shinobu and Kawasto 1960) Pridham 1970 into the genus Saccharothrix Labeda, Testa, Lechevalier, and Lechevalier 1984 as Saccharothrix aerocolonigensis sp. nov. Int J Syst Bacteriol 36, 109-110.
14. Labeda, D. P. & Lechevalier, M. P. (1989). Amendment of the genus Saccharothrix Labeda et al. 1984 and descriptions of Saccharothrix espanaensis sp. nov., Saccharothrix cryophilis sp. nov., and Saccharothrix mutabilis comb. nov. Int J Syst Bacteriol 39, 420-423.
15. Labeda, D. P. & Lyons, A. J. (1989). Saccharothrix texasensis sp. nov. and Saccharothrix waywayandensis sp. nov. Int J Syst Bacteriol 39, 355-358.
16. Labeda, D. P., Testa, R. T., Lechevalier, M. P. & Lechevalier, H. A. (1984). Saccharothrix: a new genus of the Actinomycetales related to Nocardiopsis. Int J Syst Bacteriol 34, 426-431.
17. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
18. Lechevalier, M. P., Stern, A. E. & Lechevalier, H. A. (1981). Phospholipids in the taxonomy of actinomycetes. Zentbl Bakteriol Hyg Abt I Suppl 11, 111-116.
19. Lee, S. D., Kang, S.-O. & Hah, Y. C. (2000a). Hongia gen. nov., a new genus of the order Actinomycetales. Int J Syst Bacteriol 50, 191-199.
20. Lee, S. D., Kim, E. S. & Hah, Y. C. (2000b). Phylogenetic analysis of the genera Pseudonocardia and Actinobispora based on 16S ribosomal DNA sequences. FEMS Microbiol Lett 182, 125-129.
21. Mac Faddin, J. F. (1980). Biochemical Tests for Identification of Medical Bacteria, 2nd edn. Baltimore : Williams & Wilkins.
22. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
23. Minnikin, D. E. M. (1988). Isolation and purification of mycobacterial wall lipids. In Bacterial Cell Surface Techniques, pp. 125-135. Edited by I. C. Hancock & I. R. Poxton. Chichester: Wiley.
24. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
25. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188, 221-233.
26. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
27. National Committee for Clinical Laboratory Standards. (1994). Performance Standards for Antimicrobial Disk Susceptibility Tests, 5th edn. Approved Standard M100-S5, vol. 14, no. 16. Villanova, PA: National Committee for Clinical Laboratory Standards.
28. Pridham, T. G. & Gottlieb, D. (1948). The utilization of carbon compounds by some Actinomycetales as an aid for species determination. J Bacteriol 56, 107-114.
29. Saddler, G. S., Tavecchia, P., Lociuro, S., Zanol, M., Colombo, E. & Selva, E. (1991). Analysis of madurose and other actinomycete whole cell sugars by gas chromatography. J Microbiol Methods 14, 185-191.
30. Saitou, N. & Nei, M. (1987). The neighbor-joining method : a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
31. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning : a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory.
32. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
33. Stackebrandt, E., Kroppenstedt, R. M., Jahnke, K.-D., Kemmerling, C. & Gürtler, H. (1994). Transfer of Streptosporangium viridogriseum (Okuda et al. 1966), Streptosporangium viridogriseum subsp. kofuense, and Streptosporangium albidum (Furumai et al. 1968) to Kutzneria gen. nov. as Kutzneria viridogrisea comb. nov., Kutzneria kofuensis comb. nov., and Kutzneria albida comb. nov., respectively, and emendation of the genus Streptosporangium. Int J Syst Bacteriol 44, 265-269.
34. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
35. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
36. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL w : improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
37. Tomita, K., Nakakita, Y., Hoshino, Y., Numata, K. & Kawaguchi, H. (1987). New genus of the Actinomycetales : Streptoalloteichus hindustanus gen. nov., nom. rev.; sp. nov., nom. rev. Int J Syst Bacteriol 37, 211-213.
38. Warwick, S., Bowen, T., McVeigh, H. & Embley, T. M. (1994). A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int J Syst Bacteriol 44, 293-302.
39. Williams, S. T., Goodfellow, M., Alderson, E., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
40. Yassin, A. F., Rainey, F. A., Brzezinka, H., Jahnke, K.-D., Weissbrodt, H., Budzikiewicz, H., Stackebrandt, E. & Schaal, K. P. (1995). Lentzea gen. nov., a new genus of the order Actinomyceytales. Int J Syst Bacteriol 45, 357-363.