Pseudonocardia artemisiae sp. nov., isolated from surface-sterilized Artemisia annua L.

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 5, 2011, Pages 1061-1065

  Zhao, Guo Zhen ^a   Li, Jie ^a   Huang, Hai Yu ^a   Zhu, Wen Yong ^a   Zhao, Li Xing ^a   Tang, Shu Kun ^a   Xu, Li Hua ^a   Li, Wen Jun ^a  

^a YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOSE; BACTERIAL DNA; CARDIOLIPIN; DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; MANNOSE; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLMETHYLETHANOLAMINE; PHOSPHOLIPID; RIBOSE; RNA 16S; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ARTEMISIA ANNUA; ARTICLE; BACTERIAL MEMBRANE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; DNA BASE COMPOSITION; GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT ROOT; PRIORITY JOURNAL; PSEUDONOCARDIA ARTEMISIAE; SEQUENCE HOMOLOGY;

ACTINOMYCETALES; ARTEMISIA ANNUA; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT ROOTS; RNA, RIBOSOMAL, 16S;

ARTEMISIA ANNUA; PSEUDONOCARDIA;

EID: 79955825878     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.021931-0     Document Type: Article

References (34)

1. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Coombs, J. T. & Franco, C. M. (2003). Isolation and identification of actinobacteria from surface-sterilized wheat roots. Appl Environ Microbiol 69, 5603-5608.
4. Dong, X.-Z. & Cai, M.-Y. (2001). Manual of Systematics and Identification of General Bacteria. Beijing: Science Press
5. Duangmal, K., Thamchaipenet, A., Matsumoto, A. & Takahashi, Y. (2009). Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth. Int J Syst Evol Microbiol 59, 1487-1491.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-789.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H. N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
10. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Microbiol 29, 319-322.
11. Henssen, A. (1957). Beiträge zur Morphologie und Systematic der thermophilen Actinomyceten. Arch Mikrobiol 26, 373-414 (in German)
12. Huang, Y., Wang, L., Lu, Z., Hong, L., Liu, Z., Tan, G. Y. A. & Goodfellow, M. (2002). Proposal to combine the genera Actinobispora and Pseudonocardia in an emended genus Pseudonocardia, and description of Pseudonocardia zijingensis sp. nov. Int J Syst Evol Microbiol 52, 977-982.
13. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office
14. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
15. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
16. Li, J., Zhao, G.-Z., Chen, H.-H., Wang, H.-B., Qin, S., Zhu, W.-Y., Xu, L.-H., Jiang, C.-L. & Li, W.-J. (2008). Antitumour and antimicrobial activities of endophytic streptomycetes from pharmaceutical plants in rainforest. Lett Appl Microbiol 47, 574-580.
17. McVeigh, H. P., Munro, J. & Embley, T. M. (1994). The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudonocardia halophobica. Int J Syst Bacteriol 44, 300-302.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
20. Park, S. W., Park, S. T., Lee, J. E. & Kim, Y. M. (2008). Pseudonocardia carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete, and an emended description of the genus Pseudonocardia. Int J Syst Evol Microbiol 58, 2475-2478.
21. Qin, S., Zhu, W.-Y., Jiang, J.-H., Klenk, H.-P., Li, J., Zhao, G.-Z., Xu, L.-H. & Li, W.-J. (2010). Pseudonocardia tropica sp. nov., an endophytic actinomycete isolated from the stem of Maytenus austroyunnanensis. Int J Syst Evol Microbiol 60, 2524-2528.
22. Reichert, K., Lipski, A., Pradella, S., Stackebrandt, E. & Altendorf, K. (1998). Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia. Int J Syst Bacteriol 48, 441-449.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425
24. Sakiyama, Y., Thao, N. K. N., Vinh, H. V., Giang, N. M., Miyadoh, S., Hop, D. V. & Ando, K. (2010). Pseudonocardia babensis sp. nov., isolated from plant litter. Int J Syst Evol Microbiol 60, 2336-2340.
25. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
26. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
27. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849
28. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
29. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
30. Tang, S.-K., Wang, Y., Chen, Y., Lou, K., Cao, L.-L., Xu, L.-H. & Li, W.-J. (2009). Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59, 2025-2032.
31. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
32. Warwick, S., Bowen, T., McVeigh, H. P. & Embley, T. M. (1994). A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int J Syst Bacteriol 44, 293-299.
33. Xu, P., Li, W.-J., Tang, S.-K., Zhang, Y.-Q., Chen, G.-Z., Chen, H.-H., Xu, L.-H. & Jiang, C.-L. (2005). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.
34. Zhao, G. Z., Li, J., Qin, S., Huang, H. Y., Zhu, W. Y., Xu, L. H. & Li, W. J. (2010). Streptomyces artemisiae sp. nov., isolated from surfacesterilized tissue of Artemisia annua L. Int J Syst Evol Microbiol 60, 27-32.