-
2
-
-
47749109433
-
Detecting possibly saturated positions in 18S and 28S sequences and their influence on phylogenetic reconstruction of Annelida (Lophotrochozoa)
-
Struck TH, Nesnidal MP, Purschke G, Halanych KM, (2008) Detecting possibly saturated positions in 18S and 28S sequences and their influence on phylogenetic reconstruction of Annelida (Lophotrochozoa). Molecular Phylogenetics and Evolution 48: 628-645.
-
(2008)
Molecular Phylogenetics and Evolution
, vol.48
, pp. 628-645
-
-
Struck, T.H.1
Nesnidal, M.P.2
Purschke, G.3
Halanych, K.M.4
-
4
-
-
0033676221
-
Molecular Phylogeny of the Annelida
-
McHugh D, (2000) Molecular Phylogeny of the Annelida. Canadian Journal of Zoology 78: 1873-1884.
-
(2000)
Canadian Journal of Zoology
, vol.78
, pp. 1873-1884
-
-
McHugh, D.1
-
5
-
-
18844435621
-
Molecular systematics of polychaetes (Annelida)
-
McHugh D, (2005) Molecular systematics of polychaetes (Annelida). Hydrobiologia 535/536: 309-318.
-
(2005)
Hydrobiologia
, vol.535
, pp. 309-318
-
-
McHugh, D.1
-
6
-
-
70349932469
-
Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa
-
Sperling EA, Peterson KJ, Pisani D, (2009) Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa. Mol Biol Evol 26: 2261-2274.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2261-2274
-
-
Sperling, E.A.1
Peterson, K.J.2
Pisani, D.3
-
7
-
-
70349909714
-
Bilaterian Phylogeny: A Broad Sampling of 13 Nuclear Genes Provides a New Lophotrochozoa Phylogeny and Supports a Paraphyletic Basal Acoelomorpha
-
Paps J, Baguna J, Riutort M, (2009) Bilaterian Phylogeny: A Broad Sampling of 13 Nuclear Genes Provides a New Lophotrochozoa Phylogeny and Supports a Paraphyletic Basal Acoelomorpha. Mol Biol Evol 26: 2397-2406.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2397-2406
-
-
Paps, J.1
Baguna, J.2
Riutort, M.3
-
8
-
-
64849090758
-
Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes
-
Paps J, Baguñà J, Riutort M, (2009) Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes. Proceedings of the Royal Society B: Biological Sciences 276: 1245-1254.
-
(2009)
Proceedings of the Royal Society B: Biological Sciences
, vol.276
, pp. 1245-1254
-
-
Paps, J.1
Baguñà, J.2
Riutort, M.3
-
9
-
-
0037143719
-
A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians
-
Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, et al. (2002) A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proceedings of the National Academy of Sciences of the United States of America 99: 1124611251.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 1124611251
-
-
Ruiz-Trillo, I.1
Paps, J.2
Loukota, M.3
Ribera, C.4
Jondelius, U.5
-
10
-
-
0345874732
-
Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
-
Wolf YI, Rogozin IB, Koonin EV, (2004) Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis. Genome Research 14: 29-36.
-
(2004)
Genome Research
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
-
11
-
-
15444379114
-
Resolution of a deep animal divergence by the pattern of intron conservation
-
Roy SW, Gilbert W, (2005) Resolution of a deep animal divergence by the pattern of intron conservation. PNAS 102: 4403-4408.
-
(2005)
PNAS
, vol.102
, pp. 4403-4408
-
-
Roy, S.W.1
Gilbert, W.2
-
12
-
-
17744379783
-
The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa
-
Philip GK, Creevey CJ, McInerney JO, (2005) The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa. Mol Biol Evol 22: 1175-1184.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1175-1184
-
-
Philip, G.K.1
Creevey, C.J.2
McInerney, J.O.3
-
13
-
-
34547755564
-
Rare Coding Sequence Changes are Consistent with Ecdysozoa, not Coelomata
-
Irimia M, Maeso I, Penny D, Garcia-Fernandez J, Roy SW, (2007) Rare Coding Sequence Changes are Consistent with Ecdysozoa, not Coelomata. Mol Biol Evol 24: 1604-1607.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1604-1607
-
-
Irimia, M.1
Maeso, I.2
Penny, D.3
Garcia-Fernandez, J.4
Roy, S.W.5
-
14
-
-
40849147083
-
Rare Genomic Characters Do Not Support Coelomata: Intron Loss/Gain
-
Roy SW, Irimia M, (2008) Rare Genomic Characters Do Not Support Coelomata: Intron Loss/Gain. Mol Biol Evol 25: 620-623.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 620-623
-
-
Roy, S.W.1
Irimia, M.2
-
15
-
-
77958450862
-
Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm
-
Holton TA, Pisani D, (2010) Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm. Genome Biology and Evolution 2: 310-324.
-
(2010)
Genome Biology and Evolution
, vol.2
, pp. 310-324
-
-
Holton, T.A.1
Pisani, D.2
-
16
-
-
17744386162
-
Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
-
Philippe H, Lartillot N, Brinkmann H, (2005) Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol 22: 1246-1253.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
Lartillot, N.2
Brinkmann, H.3
-
17
-
-
33746545695
-
Chaetognath phylogenomics: a protostome with deuterostome-like development
-
Marletaz F, Martin E, Perez Y, Papillon D, Caubit X, et al. (2006) Chaetognath phylogenomics: a protostome with deuterostome-like development. Current Biology 16: R577-R578.
-
(2006)
Current Biology
, vol.16
-
-
Marletaz, F.1
Martin, E.2
Perez, Y.3
Papillon, D.4
Caubit, X.5
-
18
-
-
34548448442
-
Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups
-
Hallstrom BM, Kullberg M, Nilsson MA, Janke A, (2007) Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups. Mol Biol Evol 24: 2059-2068.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2059-2068
-
-
Hallstrom, B.M.1
Kullberg, M.2
Nilsson, M.A.3
Janke, A.4
-
19
-
-
37549050188
-
Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta
-
Hausdorf B, Helmkampf M, Meyer A, Witek A, Herlyn H, et al. (2007) Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta. Molecular Biology and Evolution 24: 2723-2729.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 2723-2729
-
-
Hausdorf, B.1
Helmkampf, M.2
Meyer, A.3
Witek, A.4
Herlyn, H.5
-
20
-
-
40249100484
-
Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics
-
Philippe H, (2007) Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics. PLoS ONE 2: e717.
-
(2007)
PLoS ONE
, vol.2
-
-
Philippe, H.1
-
21
-
-
36148929776
-
EST sequencing of Onychophora and phylogenomic analysis of Metazoa
-
Roeding F, Hagner-Holler S, Ruhberg H, Ebersberger I, von Haeseler A, et al. (2007) EST sequencing of Onychophora and phylogenomic analysis of Metazoa. Molecular Phylogenetics and Evolution 45: 942-951.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.45
, pp. 942-951
-
-
Roeding, F.1
Hagner-Holler, S.2
Ruhberg, H.3
Ebersberger, I.4
von Haeseler, A.5
-
22
-
-
40849113099
-
Phylogenetic position of Nemertea derived from phylogenomic data
-
Struck TH, Fisse F, (2008) Phylogenetic position of Nemertea derived from phylogenomic data. Molecular Biology and Evolution 25: 728-736.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 728-736
-
-
Struck, T.H.1
Fisse, F.2
-
23
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, et al. (2008) Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452: 745-750.
-
(2008)
Nature
, vol.452
, pp. 745-750
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
-
24
-
-
40849104855
-
A Phylogenomic Investigation into the Origin of Metazoa
-
Ruiz-Trillo I, Roger AJ, Burger G, Gray MW, Lang BF, (2008) A Phylogenomic Investigation into the Origin of Metazoa. Mol Biol Evol 25: 664-672.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 664-672
-
-
Ruiz-Trillo, I.1
Roger, A.J.2
Burger, G.3
Gray, M.W.4
Lang, B.F.5
-
25
-
-
72749099971
-
Assessing the root of bilaterian animals with scalable phylogenomic methods
-
Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, et al. (2009) Assessing the root of bilaterian animals with scalable phylogenomic methods. Proceedings of the Royal Society B: Biological Sciences 276: 4261-4270.
-
(2009)
Proceedings of the Royal Society B: Biological Sciences
, vol.276
, pp. 4261-4270
-
-
Hejnol, A.1
Obst, M.2
Stamatakis, A.3
Ott, M.4
Rouse, G.W.5
-
26
-
-
79952254741
-
Phylogenomic analyses unravel annelid evolution
-
Struck TH, Paul C, Hill N, Hartmann S, Hösel C, et al. (2011) Phylogenomic analyses unravel annelid evolution. Nature 471: 95-98.
-
(2011)
Nature
, vol.471
, pp. 95-98
-
-
Struck, T.H.1
Paul, C.2
Hill, N.3
Hartmann, S.4
Hösel, C.5
-
27
-
-
80053132393
-
Phylogenomics reveals deep molluscan relationships
-
Kocot KM, Cannon JT, Todt C, Citarella MR, Kohn AB, et al. (2011) Phylogenomics reveals deep molluscan relationships. Nature 477: 452-456.
-
(2011)
Nature
, vol.477
, pp. 452-456
-
-
Kocot, K.M.1
Cannon, J.T.2
Todt, C.3
Citarella, M.R.4
Kohn, A.B.5
-
28
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
Smith SA, Wilson NG, Goetz FE, Feehery C, Andrade SCS, et al. (2011) Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 480: 364-367.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
Wilson, N.G.2
Goetz, F.E.3
Feehery, C.4
Andrade, S.C.S.5
-
29
-
-
84857215053
-
Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda
-
von Reumont BM, Jenner RA, Wills MA, Dell'ÄôAmpio E, Pass Gn, et al. (2012) Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda. Molecular Biology and Evolution 29: 1031-1045.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1031-1045
-
-
von Reumont, B.M.1
Jenner, R.A.2
Wills, M.A.3
Dell'ÄôAmpio, E.4
Pass, G.5
-
30
-
-
77952490857
-
Phylogenomics with incomplete taxon coverage: the limits to inference
-
Sanderson M, McMahon M, Steel M, (2010) Phylogenomics with incomplete taxon coverage: the limits to inference. BMC Evolutionary Biology 10: 155.
-
(2010)
BMC Evolutionary Biology
, vol.10
, pp. 155
-
-
Sanderson, M.1
McMahon, M.2
Steel, M.3
-
32
-
-
0014800108
-
Distinguishing Homologous from Analogous Proteins
-
Fitch WM, (1970) Distinguishing Homologous from Analogous Proteins. Systematic Biology 19: 99-113.
-
(1970)
Systematic Biology
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
33
-
-
35348893207
-
Mapping Human Genetic Ancestry
-
Ebersberger I, Galgoczy P, Taudien S, Taenzer S, Platzer M, et al. (2007) Mapping Human Genetic Ancestry. Mol Biol Evol 24: 2266-2276.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2266-2276
-
-
Ebersberger, I.1
Galgoczy, P.2
Taudien, S.3
Taenzer, S.4
Platzer, M.5
-
34
-
-
84887212436
-
Phylogenomics: Gene Duplication, Unrecognized Paralogy and Outgroup Choice
-
Roy SW, (2009) Phylogenomics: Gene Duplication, Unrecognized Paralogy and Outgroup Choice. PLoS ONE 4: e4568.
-
(2009)
PLoS ONE
, vol.4
-
-
Roy, S.W.1
-
35
-
-
77958144939
-
A Phylogenomic Approach to Resolve the Arthropod Tree of Life
-
Meusemann K, von Reumont BM, Simon S, Roeding F, Strauss S, et al. (2010) A Phylogenomic Approach to Resolve the Arthropod Tree of Life. Molecular Biology and Evolution 27: 2451-2464.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 2451-2464
-
-
Meusemann, K.1
von Reumont, B.M.2
Simon, S.3
Roeding, F.4
Strauss, S.5
-
36
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Dongen SV, Ouzounis CA, (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research 30: 1575-1584.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Dongen, S.V.2
Ouzounis, C.A.3
-
37
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS, (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Research 13: 2178-2189.
-
(2003)
Genome Research
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr., C.J.2
Roos, D.S.3
-
38
-
-
79958103506
-
ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms
-
Kim K, Kim W, Kim S (2011) ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms. Bioinformatics 27 1731-1733.
-
(2011)
Bioinformatics
, vol.27
, pp. 1731-1733
-
-
Kim, K.1
Kim, W.2
Kim, S.3
-
39
-
-
79959355079
-
MultiMSOAR 2.0: An Accurate Tool to Identify Ortholog Groups among Multiple Genomes
-
Shi G, Peng M-C, Jiang T, (2011) MultiMSOAR 2.0: An Accurate Tool to Identify Ortholog Groups among Multiple Genomes. PLoS ONE 6: e20892.
-
(2011)
PLoS ONE
, vol.6
-
-
Shi, G.1
Peng, M.-C.2
Jiang, T.3
-
40
-
-
0242268536
-
Ending incongruence
-
Gee H, (2003) Ending incongruence. Nature 425: 782.
-
(2003)
Nature
, vol.425
, pp. 782
-
-
Gee, H.1
-
41
-
-
33645850710
-
Phylogenomics: the beginning of incongruence?
-
Jeffroy O, Brinkmann H, Delsuc F, Philippe H, (2006) Phylogenomics: the beginning of incongruence? Trends in Genetics 22: 225-231.
-
(2006)
Trends in Genetics
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
Brinkmann, H.2
Delsuc, F.3
Philippe, H.4
-
42
-
-
78649343343
-
The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Data Sets
-
Evans NM, Holder MT, Barbeitos MS, Okamura B, Cartwright P, (2010) The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Data Sets. Molecular Biology and Evolution 27: 2733-2746.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 2733-2746
-
-
Evans, N.M.1
Holder, M.T.2
Barbeitos, M.S.3
Okamura, B.4
Cartwright, P.5
-
43
-
-
79951478430
-
Acoelomorph flatworms are deuterostomes related to Xenoturbella
-
Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, et al. (2011) Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470: 255-258.
-
(2011)
Nature
, vol.470
, pp. 255-258
-
-
Philippe, H.1
Brinkmann, H.2
Copley, R.R.3
Moroz, L.L.4
Nakano, H.5
-
44
-
-
4143122089
-
Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments
-
Philippe H, Snell EA, Bapteste E, Lopez P, Holland PWH, et al. (2004) Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments. Mol Biol Evol 21: 1740-1752.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1740-1752
-
-
Philippe, H.1
Snell, E.A.2
Bapteste, E.3
Lopez, P.4
Holland, P.W.H.5
-
45
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
-
Lartillot N, Brinkmann H, Philippe H, (2007) Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evolutionary Biology 7: S4.
-
(2007)
BMC Evolutionary Biology
, vol.7
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
46
-
-
77955950911
-
Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships
-
Nesnidal MP, Helmkampf M, Bruchhaus I, Hausdorf B, (2010) Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships. Molecular Biology and Evolution 27: 2095-2104.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 2095-2104
-
-
Nesnidal, M.P.1
Helmkampf, M.2
Bruchhaus, I.3
Hausdorf, B.4
-
47
-
-
84862928655
-
Statistics and Truth in Phylogenomics
-
Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K, (2012) Statistics and Truth in Phylogenomics. Molecular Biology and Evolution 29: 457-472.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 457-472
-
-
Kumar, S.1
Filipski, A.J.2
Battistuzzi, F.U.3
Kosakovsky Pond, S.L.4
Tamura, K.5
-
49
-
-
34247489722
-
Annelida phylogeny and the status of Sipuncula and Echiura
-
Struck TH, Schult N, Kusen T, Hickman E, Bleidorn C, et al. (2007) Annelida phylogeny and the status of Sipuncula and Echiura. BMC Evolutionary Biology 7: 57.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 57
-
-
Struck, T.H.1
Schult, N.2
Kusen, T.3
Hickman, E.4
Bleidorn, C.5
-
50
-
-
33847742659
-
A molecular phylogeny of annelids
-
Rousset V, Pleijel F, Rouse GW, Erséus C, Siddall ME, (2007) A molecular phylogeny of annelids. Cladistics 23: 41-63.
-
(2007)
Cladistics
, vol.23
, pp. 41-63
-
-
Rousset, V.1
Pleijel, F.2
Rouse, G.W.3
Erséus, C.4
Siddall, M.E.5
-
51
-
-
1242270885
-
New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences
-
Bleidorn C, Vogt L, Bartolomaeus T, (2003) New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences. Molecular Phylogenetics and Evolution 29: 279-288.
-
(2003)
Molecular Phylogenetics and Evolution
, vol.29
, pp. 279-288
-
-
Bleidorn, C.1
Vogt, L.2
Bartolomaeus, T.3
-
52
-
-
33644867607
-
The complete mitochondrial genome of the orbiniid polychaete Orbinia latreilli (Annelida, Orbiniidae) - a novel gene order for Annelida and implications for annelid phylogeny
-
Bleidorn C, Podsiadlowski L, Bartolomaeus T, (2006) The complete mitochondrial genome of the orbiniid polychaete Orbinia latreilli (Annelida, Orbiniidae)- a novel gene order for Annelida and implications for annelid phylogeny. Gene 370: 96-103.
-
(2006)
Gene
, vol.370
, pp. 96-103
-
-
Bleidorn, C.1
Podsiadlowski, L.2
Bartolomaeus, T.3
-
53
-
-
33746307877
-
A multigene framework for polychaete phylogenetic studies
-
Colgan DJ, Hutchings PA, Braune M, (2006) A multigene framework for polychaete phylogenetic studies. Organisms, Diversity and Evolution 6: 220-235.
-
(2006)
Organisms, Diversity and Evolution
, vol.6
, pp. 220-235
-
-
Colgan, D.J.1
Hutchings, P.A.2
Braune, M.3
-
54
-
-
9644252735
-
Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata ("Polychaeta")
-
Jördens J, Struck TH, Purschke G, (2004) Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata ("Polychaeta". Annelida) based on 18S rDNA, 28S rDNA and COI sequences. Journal of Zoological Systematics and Evolutionary Research 42: 270-280.
-
(2004)
Journal of Zoological Systematics and Evolutionary Research
, vol.42
, pp. 270-280
-
-
Jördens, J.1
Struck, T.H.2
Purschke, G.3
-
55
-
-
0032749338
-
Assessing the usefullness of histone H3, U2 snRNA and 28S rDNA in analyses of polychaete relationships
-
Brown S, Rouse GW, Hutchings P, Colgan D, (1999) Assessing the usefullness of histone H3, U2 snRNA and 28S rDNA in analyses of polychaete relationships. Australian Journal of Zoology 47: 499-516.
-
(1999)
Australian Journal of Zoology
, vol.47
, pp. 499-516
-
-
Brown, S.1
Rouse, G.W.2
Hutchings, P.3
Colgan, D.4
-
56
-
-
77956120950
-
Phylogenetic position of Sipuncula derived from multi-gene and phylogenomic data and its implication for the evolution of segmentation
-
Dordel J, Fisse F, Purschke G, Struck TH, (2010) Phylogenetic position of Sipuncula derived from multi-gene and phylogenomic data and its implication for the evolution of segmentation. Journal of Zoological Systematics and Evolutionary Research 48: 197-207.
-
(2010)
Journal of Zoological Systematics and Evolutionary Research
, vol.48
, pp. 197-207
-
-
Dordel, J.1
Fisse, F.2
Purschke, G.3
Struck, T.H.4
-
57
-
-
79953716259
-
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
-
Philippe H, Brinkmann H, Lavrov DV, Littlewood DTJ, Manuel M, et al. (2011) Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough. PLoS Biology 9: 3.
-
(2011)
PLoS Biology
, vol.9
, pp. 3
-
-
Philippe, H.1
Brinkmann, H.2
Lavrov, D.V.3
Littlewood, D.T.J.4
Manuel, M.5
-
58
-
-
65249099546
-
Phylogenomics Revives Traditional Views on Deep Animal Relationships
-
Philippe H, Derelle R, Lopez P, Pick K, Borchiellini C, et al. (2009) Phylogenomics Revives Traditional Views on Deep Animal Relationships. Current Biology 19: 706-712.
-
(2009)
Current Biology
, vol.19
, pp. 706-712
-
-
Philippe, H.1
Derelle, R.2
Lopez, P.3
Pick, K.4
Borchiellini, C.5
-
59
-
-
34547883900
-
Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans
-
Rodríguez-Ezpeleta N, Brinkmann H, Burger G, Roger AJ, Gray MW, et al. (2007) Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans. Current Biology 17: 1420-1425.
-
(2007)
Current Biology
, vol.17
, pp. 1420-1425
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burger, G.3
Roger, A.J.4
Gray, M.W.5
-
60
-
-
33744984621
-
Molecular Phylogenetic Analyses Indicate Multiple Independent Emergences of Parasitism in Myzostomida (Protostomia)
-
Lanterbecq D, Rouse GW, Milinkovitch MC, Eeckhaut I, (2006) Molecular Phylogenetic Analyses Indicate Multiple Independent Emergences of Parasitism in Myzostomida (Protostomia). Systematic Biology 55: 208-227.
-
(2006)
Systematic Biology
, vol.55
, pp. 208-227
-
-
Lanterbecq, D.1
Rouse, G.W.2
Milinkovitch, M.C.3
Eeckhaut, I.4
-
62
-
-
84877153479
-
-
Ribosomal Protein Gene Database
-
Ribosomal Protein Gene Database (2010).
-
(2010)
-
-
-
63
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K-I, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
64
-
-
43249090276
-
Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?
-
Hartmann S, Vision T, (2008) Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? BMC Evolutionary Biology 8: 95.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 95
-
-
Hartmann, S.1
Vision, T.2
-
65
-
-
33750403801
-
RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models
-
Stamatakis A, (2006) RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
66
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
67
-
-
0025633118
-
Homologous ribosomal protein genes on the human X and Y chromosomes: Escape from X inactivation and possible implications for turner syndrome
-
Fisher EMC, Beer-Romero P, Brown LG, Ridley A, McNeil JA, et al. (1990) Homologous ribosomal protein genes on the human X and Y chromosomes: Escape from X inactivation and possible implications for turner syndrome. Cell 63: 1205-1218.
-
(1990)
Cell
, vol.63
, pp. 1205-1218
-
-
Fisher, E.M.C.1
Beer-Romero, P.2
Brown, L.G.3
Ridley, A.4
McNeil, J.A.5
-
68
-
-
83655183288
-
Detecting the symplesiomorphy trap: A multigene phylogenetic analysis for terebelliform annelids
-
Zhong M, Hansen B, Nesnidal MP, Golombek A, Halanych KM, et al. (2011) Detecting the symplesiomorphy trap: A multigene phylogenetic analysis for terebelliform annelids. BMC Evolutionary Biology 11: 369.
-
(2011)
BMC Evolutionary Biology
, vol.11
, pp. 369
-
-
Zhong, M.1
Hansen, B.2
Nesnidal, M.P.3
Golombek, A.4
Halanych, K.M.5
-
69
-
-
34547812067
-
Mitochondrial genome and nuclear sequence data support Myzostomida as part of the annelid radiation
-
Bleidorn C, Eeckhaut I, Podsiadlowski L, Schult N, McHugh D, et al. (2007) Mitochondrial genome and nuclear sequence data support Myzostomida as part of the annelid radiation. Molecular Biology and Evolution 24: 1690-1701.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1690-1701
-
-
Bleidorn, C.1
Eeckhaut, I.2
Podsiadlowski, L.3
Schult, N.4
McHugh, D.5
-
71
-
-
33751000470
-
Phylogeny of sipunculan worms: A combined analysis of four gene regions and morphology
-
Schulze A, Cutler EB, Giribet G, (2007) Phylogeny of sipunculan worms: A combined analysis of four gene regions and morphology. Molecular Phylogenetics and Evolution 42: 171-192.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.42
, pp. 171-192
-
-
Schulze, A.1
Cutler, E.B.2
Giribet, G.3
-
73
-
-
40049112246
-
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
-
Smith SA, Dunn CW, (2008) Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics 24: 715-716.
-
(2008)
Bioinformatics
, vol.24
, pp. 715-716
-
-
Smith, S.A.1
Dunn, C.W.2
-
75
-
-
69549097820
-
Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes
-
Zrzavy J, Riha P, Pialek L, Janouskovec J, (2009) Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes. BMC Evolutionary Biology 9: 189.
-
(2009)
BMC Evolutionary Biology
, vol.9
, pp. 189
-
-
Zrzavy, J.1
Riha, P.2
Pialek, L.3
Janouskovec, J.4
-
76
-
-
3042744353
-
Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences
-
Passamaneck YJ, Schander C, Halanych KM, (2004) Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences. Molecular Phylogenetics and Evolution 32: 25-38.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.32
, pp. 25-38
-
-
Passamaneck, Y.J.1
Schander, C.2
Halanych, K.M.3
-
77
-
-
33745135433
-
Lophotrochozoan phylogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly
-
Passamaneck Y, Halanych KM, (2006) Lophotrochozoan phylogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly. Molecular Phylogenetics and Evolution 40: 20-28.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 20-28
-
-
Passamaneck, Y.1
Halanych, K.M.2
-
78
-
-
18744362770
-
Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data
-
Bleidorn C, (2005) Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data. Zoological Journal of the Linnean Society 144: 59-74.
-
(2005)
Zoological Journal of the Linnean Society
, vol.144
, pp. 59-74
-
-
Bleidorn, C.1
-
79
-
-
27844439970
-
A scaleless scale worm: Molecular evidence for the phylogenetic placement of Pisione remota (Pisionidae, Annelida)
-
Struck TH, Purschke G, Halanych KM, (2005) A scaleless scale worm: Molecular evidence for the phylogenetic placement of Pisione remota (Pisionidae, Annelida). Marine Biology Research 1: 243-253.
-
(2005)
Marine Biology Research
, vol.1
, pp. 243-253
-
-
Struck, T.H.1
Purschke, G.2
Halanych, K.M.3
-
80
-
-
26444613798
-
Phylogeny of Aphroditiformia (Polychaeta) based on molecular and morphological data
-
Wiklund H, Nygren A, Pleijel F, Sundberg P, (2005) Phylogeny of Aphroditiformia (Polychaeta) based on molecular and morphological data. Molecular Phylogenetics and Evolution 37: 494-502.
-
(2005)
Molecular Phylogenetics and Evolution
, vol.37
, pp. 494-502
-
-
Wiklund, H.1
Nygren, A.2
Pleijel, F.3
Sundberg, P.4
-
81
-
-
84858079538
-
Disentangling ribbon worm relationships: multi-locus analysis supports traditional classification of the phylum Nemertea
-
Andrade SCS, Strand M, Schwartz M, Chen H, Kajihara H, et al. (2012) Disentangling ribbon worm relationships: multi-locus analysis supports traditional classification of the phylum Nemertea. Cladistics 28: 141-159.
-
(2012)
Cladistics
, vol.28
, pp. 141-159
-
-
Andrade, S.C.S.1
Strand, M.2
Schwartz, M.3
Chen, H.4
Kajihara, H.5
-
82
-
-
80053167952
-
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
-
Campbell LI, Rota-Stabelli O, Edgecombe GD, Marchioro T, Longhorn SJ, et al. (2011) MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences 108: 15920-15924.
-
(2011)
Proceedings of the National Academy of Sciences
, vol.108
, pp. 15920-15924
-
-
Campbell, L.I.1
Rota-Stabelli, O.2
Edgecombe, G.D.3
Marchioro, T.4
Longhorn, S.J.5
-
83
-
-
78650474944
-
A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
-
Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, et al. (2011) A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings of the Royal Society B: Biological Sciences 278: 298-306.
-
(2011)
Proceedings of the Royal Society B: Biological Sciences
, vol.278
, pp. 298-306
-
-
Rota-Stabelli, O.1
Campbell, L.2
Brinkmann, H.3
Edgecombe, G.D.4
Longhorn, S.J.5
-
84
-
-
0032040372
-
Paraphyletic Status of Polychaeta Suggested by Phylogenetic Analysis Based on the Amino Acid Sequences of Elongation Factor-1[alpha]
-
Kojima S, (1998) Paraphyletic Status of Polychaeta Suggested by Phylogenetic Analysis Based on the Amino Acid Sequences of Elongation Factor-1[alpha]. Molecular Phylogenetics and Evolution 9: 255-261.
-
(1998)
Molecular Phylogenetics and Evolution
, vol.9
, pp. 255-261
-
-
Kojima, S.1
-
85
-
-
1542349081
-
18S rDNA phylogeny of Clitellata (Annelida)
-
Erséus C, Kallersjo M, (2004) 18S rDNA phylogeny of Clitellata (Annelida). Zoologica Scripta 33: 187-196.
-
(2004)
Zoologica Scripta
, vol.33
, pp. 187-196
-
-
Erséus, C.1
Kallersjo, M.2
-
86
-
-
34250338979
-
Non-leech Clitellata
-
In: Rouse GW, Pleijel F, editors Enfield, NH: Science Publishers
-
Jamieson BGM, Ferraguti M (2006) Non-leech Clitellata. In: Rouse GW, Pleijel F, editors. Reproductive Biology and Phylogeny of Annelida. Enfield, NH: Science Publishers. 235-392.
-
(2006)
Reproductive Biology and Phylogeny of Annelida
, pp. 235-392
-
-
Jamieson, B.G.M.1
Ferraguti, M.2
|