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Volumn 25, Issue 4, 2008, Pages 620-623

Rare genomic characters do not support Coelomata: Intron loss/gain

Author keywords

Coelomata; Ecdysozoa; Long branches; Phylogeny; Rare genomic characters

Indexed keywords

ACCURACY; ARTICLE; CLADISTICS; GENETIC CONSERVATION; GENETIC VARIABILITY; GENOMICS; INTRON; NONHUMAN; PHYLOGENY;

EID: 40849147083     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn035     Document Type: Article
Times cited : (15)

References (29)
  • 2
    • 2342548646 scopus 로고    scopus 로고
    • Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues
    • Banyai L, Patthy L. 2004. Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues. FEBS Lett. 565:127-132.
    • (2004) FEBS Lett , vol.565 , pp. 127-132
    • Banyai, L.1    Patthy, L.2
  • 3
    • 33845908745 scopus 로고    scopus 로고
    • Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?
    • Baurain D, Brinkmann H, Philippe H. 2007. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? Mol Biol Evol. 24:6-9.
    • (2007) Mol Biol Evol , vol.24 , pp. 6-9
    • Baurain, D.1    Brinkmann, H.2    Philippe, H.3
  • 4
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • Brinkmann H, van der Giezen M, Zhou Y, Poncelin de Raucourt G, Philippe H. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol. 54:743-757.
    • (2005) Syst Biol , vol.54 , pp. 743-757
    • Brinkmann, H.1    van der Giezen, M.2    Zhou, Y.3    Poncelin de Raucourt, G.4    Philippe, H.5
  • 5
    • 34347389905 scopus 로고    scopus 로고
    • Three distinct modes of intron dynamics in the evolution of eukaryotes
    • Carmel L, Wolf YI, Rogozin IB, Koonin EV. 2007. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res. 17:1034-1044.
    • (2007) Genome Res , vol.17 , pp. 1034-1044
    • Carmel, L.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 6
    • 33646137380 scopus 로고    scopus 로고
    • Csurös M. 2005. Likely scenarios of intron evolution. In: McLysaght A, Huson DH, editors. Comparative Genomics, 3678 of LNBI, Heidelberg (Germany): Springer. p. 47-60.
    • Csurös M. 2005. Likely scenarios of intron evolution. In: McLysaght A, Huson DH, editors. Comparative Genomics, Vol. 3678 of LNBI, Heidelberg (Germany): Springer. p. 47-60.
  • 8
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature. 439:965-968.
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 9
    • 27844438226 scopus 로고    scopus 로고
    • Genome-scale evidence of the nematode-arthropod clade
    • Dopazo H, Dopazo J. 2005. Genome-scale evidence of the nematode-arthropod clade. Genome Biol. 6:R41.
    • (2005) Genome Biol , vol.6
    • Dopazo, H.1    Dopazo, J.2
  • 11
    • 0037020114 scopus 로고    scopus 로고
    • Holt RA, Subramanian GM, Halpern A, et al. (123 co-authors). 2002. The genome sequence of the malaria mosquito Anopheles gambiae. Science. 298:129-149.
    • Holt RA, Subramanian GM, Halpern A, et al. (123 co-authors). 2002. The genome sequence of the malaria mosquito Anopheles gambiae. Science. 298:129-149.
  • 12
    • 34547755564 scopus 로고    scopus 로고
    • Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata
    • Irimia M, Maeso I, Penny D, Garcia-Fernandez J, Roy SW. 2007. Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata. Mol Biol Evol. 24:1604-1607.
    • (2007) Mol Biol Evol , vol.24 , pp. 1604-1607
    • Irimia, M.1    Maeso, I.2    Penny, D.3    Garcia-Fernandez, J.4    Roy, S.W.5
  • 13
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 7:S4.
    • (2007) BMC Evol Biol , vol.7
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 14
    • 84872246297 scopus 로고    scopus 로고
    • New maximum likelihood estimators for eukaryotic intron evolution
    • Nguyen H, Yoshihama M, Kenmochi N. 2005. New maximum likelihood estimators for eukaryotic intron evolution. PLoS Comput Biol. 1:e79.
    • (2005) PLoS Comput Biol , vol.1
    • Nguyen, H.1    Yoshihama, M.2    Kenmochi, N.3
  • 15
    • 17744379783 scopus 로고    scopus 로고
    • The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
    • Philip GK, Creevey CJ, McInerney JO. 2005. The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol Biol Evol. 22:1175-1184.
    • (2005) Mol Biol Evol , vol.22 , pp. 1175-1184
    • Philip, G.K.1    Creevey, C.J.2    McInerney, J.O.3
  • 16
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa and Protostomia
    • Philippe H, Lartillot N, Brinkmann H. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa and Protostomia. Mol Biol Evol. 22:1246-1253.
    • (2005) Mol Biol Evol , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 18
    • 28144460075 scopus 로고    scopus 로고
    • Raible F, Tessmar-Raible K, Osoegawa K, et al. (12 co-authors). 2005. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science. 310:1325-1326.
    • Raible F, Tessmar-Raible K, Osoegawa K, et al. (12 co-authors). 2005. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science. 310:1325-1326.
  • 19
    • 21044447550 scopus 로고    scopus 로고
    • Analysis of evolution of exon-intron structure of eukaryotic genes
    • Rogozin I, Sverdlov A, Babenko V, Koonin E. 2005. Analysis of evolution of exon-intron structure of eukaryotic genes. Brief Bioinform. 6:118-134.
    • (2005) Brief Bioinform , vol.6 , pp. 118-134
    • Rogozin, I.1    Sverdlov, A.2    Babenko, V.3    Koonin, E.4
  • 20
    • 34047227628 scopus 로고    scopus 로고
    • Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements
    • Rogozin IB, Wolf YI, Carmel L, Koonin EV. 2007a. Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements. Mol Biol Evol. 24:1080-1090.
    • (2007) Mol Biol Evol , vol.24 , pp. 1080-1090
    • Rogozin, I.B.1    Wolf, Y.I.2    Carmel, L.3    Koonin, E.V.4
  • 21
    • 37549040975 scopus 로고    scopus 로고
    • Analysis of rare amino acid replacements supports the Coelomata clade
    • Rogozin IB, Wolf YI, Carmel L, Koonin EV. 2007b. Analysis of rare amino acid replacements supports the Coelomata clade. Mol Biol Evol. 24:2594-2597.
    • (2007) Mol Biol Evol , vol.24 , pp. 2594-2597
    • Rogozin, I.B.1    Wolf, Y.I.2    Carmel, L.3    Koonin, E.V.4
  • 22
    • 0042921194 scopus 로고    scopus 로고
    • Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
    • Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. 2003. Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol. 13:1512-1517.
    • (2003) Curr Biol , vol.13 , pp. 1512-1517
    • Rogozin, I.B.1    Wolf, Y.I.2    Sorokin, A.V.3    Mirkin, B.G.4    Koonin, E.V.5
  • 23
    • 15444379114 scopus 로고    scopus 로고
    • Resolution of a deep animal divergence by the pattern of intron conservation
    • Roy SW, Gilbert W. 2005a. Resolution of a deep animal divergence by the pattern of intron conservation. Proc Natl Acad Sci USA. 102:4403-4408.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4403-4408
    • Roy, S.W.1    Gilbert, W.2
  • 24
    • 17644379051 scopus 로고    scopus 로고
    • Rates of intron loss and gain: Implications for early eukaryotic evolution
    • Roy SW, Gilbert W. 2005b. Rates of intron loss and gain: implications for early eukaryotic evolution. Proc Natl Acad Sci USA. 102:5773-5778.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5773-5778
    • Roy, S.W.1    Gilbert, W.2
  • 26
    • 34447330054 scopus 로고    scopus 로고
    • A high percentage of introns in human genes were present early in animal evolution: Evidence from the basal metazoan Nematostella vectensis
    • Sullivan JC, Reitzel AM, Finnerty JR. 2006. A high percentage of introns in human genes were present early in animal evolution: evidence from the basal metazoan Nematostella vectensis. Genome Inform. 17:219-229.
    • (2006) Genome Inform , vol.17 , pp. 219-229
    • Sullivan, J.C.1    Reitzel, A.M.2    Finnerty, J.R.3
  • 27
    • 4143150876 scopus 로고    scopus 로고
    • Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron insertion
    • Sverdlov A, Babenko V, Rogozin I, Koonin E. 2004. Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron insertion. Gene. 338:85-91.
    • (2004) Gene , vol.338 , pp. 85-91
    • Sverdlov, A.1    Babenko, V.2    Rogozin, I.3    Koonin, E.4
  • 28
    • 0345874732 scopus 로고    scopus 로고
    • Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
    • Wolf Y, Rogozin I, Koonin E. 2004. Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Res. 14:29-36.
    • (2004) Genome Res , vol.14 , pp. 29-36
    • Wolf, Y.1    Rogozin, I.2    Koonin, E.3
  • 29
    • 35848952076 scopus 로고    scopus 로고
    • Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation
    • Zheng J, Rogozin IB, Koonin EV, Przytycka TM. 2007. Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation. Mol Biol Evol. 24:2583-2592.
    • (2007) Mol Biol Evol , vol.24 , pp. 2583-2592
    • Zheng, J.1    Rogozin, I.B.2    Koonin, E.V.3    Przytycka, T.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.