Assessing the usefulness of histone H3, U2 snRNA and 28s rDNA in analyses of polychaete relationships

Australian Journal of Zoology

Volumn 47, Issue 5, 1999, Pages 499-516

  Brown, S ^a   Rouse, G ^b   Hutchings, P ^a   Colgan, D ^a  

^a AUSTRALIAN MUSEUM   (Australia)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ACICULATA; CHAETOPTERIDAE; CIRRATULIDAE; CLITELLATA; ECHIURA; INVERTEBRATA; OWENIIDAE; PHYLLODOCIDA; POGONOPHORA; POLYCHAETA; SABELLIDAE; SERPULIDAE; SIBOGLINIDAE; SIPUNCULA; SIPUNCULIDA; STERNASPIDAE; TEREBELLIDA; TEREBELLIDAE; TURBELLARIA; UNIDENTIFIED AGENTS; VESTIMENTIFERA;

EID: 0032749338     PISSN: 0004959X     EISSN: None     Source Type: Journal    
DOI: 10.1071/ZO99026     Document Type: Article

References (58)

1. Alonso, A., Beck, E., Jorcana, J. L., and Hovemann, B. (1984). Divergence of U2 SnRNA sequences in the genome of Drosophila melanogaster. Nucleic Acids Research 12, 9543-9550.
2. Bartolomaeus, T. (1995). Structure and formation of the uncini in Pectinaria koreni. Pectinaria auricoma (Terebellida) and Spirorbis spirorbis (Sabellida): implications for annelid phylogeny and the position of the Pogonophora. Zoomorphology 115, 161-177.
3. Bartolomaeus, T. (1997). Chaetogenesis in polychaetous Annelida - significance for annelid systematics and the position of the Pogonophora. Zoology 100, 348-364.
4. Black, M. B., Halanych, K. M., Maas, P. A. Y., Hoeh, W. R., Hashimoto, J., Desbruyeres, D., Lutz, R. A., and Vrijenhoek, R. C. (1997). Molecular systematics of vestimentiferan tubeworms from hydrothermal vents and cold-water seeps. Marine Biology 130, 141-149.
5. Bremer, K. (1994). Branch support and tree stability. Cladistics 10, 295-304.
6. Butterfield, N. J. (1990). A reassessment of the enigmatic Burgess Shale fossil Wiwaxia corrugata (Matthew) and its relationship to the polychaete Canadia spinosa Walcott. Paleobiologv 16, 287-303.
7. Carranza, S., Giribet, G., Ribera, C., Baguñà, J., and Ruitort, M. (1996). Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Tricladida). Molecular Biology and Evolution 13, 824-832.
8. Colgan, D. J., McLauchlan, A., Wilson, G. D. F., Livingston, S. P., Macaranas, J., Edgecombe, G. D., Cassis, G., and. Gray, M. R. (1998). Molecular phylogenetics of the Arthropoda: relationships based on histone H3 and U2 snRNA DNA sequences. Australian Journal of Zoology 46, 419-437.
9. Colgan, D. J., Ponder, W. F., and Eggler, P. E. (In press). Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences. Zoologica Scripta.
10. Dahl, E. (1955). On the morphology and affinities of the annelid genus Sternaspis. Acta Universitas Lundensis (New Series, Avd. 2) 51, 1-22.
11. DeBry, R. W., and Marzluff, W. F. (1994). Selection on silent sites in the rodent H3 histone gene family. Genetics 138, 191-202.
12. de Queiroz, A., Donoghue, M. J., and Kim, J. (1995). Separate versus combined analysis of phylogenetic evidence. Annual Review of Ecology and Systematics 26, 657-681.
13. Eibye-Jacobsen, D., and Nielsen, C. (1996). The re-articulation of annelids. Zoologica Seripta 25, 275-282.
14. Eriksson, T., and Wikström, N. (1996). 'AutoDecay. Version 3.0.'
15. Fauchald, K. (1977). The polychaete worms. Definitions and keys to the orders, families and genera. Natural History Museum of Los Angeles City Science Series 28, 1-88.
16. Fauchald, K., and Rouse, G. W. (1997). Polychaete systematics, past and present. Zoologica Scripta 26, 71-138.
17. Fitch, D. H. A., and Strausbaugh, L. D. (1993). Low codon bias and high rates of synonymous substitution in Drosophila hydei and D. melanogaster histone genes. Molecular Biology and Evolution 10, 397-413.
18. Guthrie, C., and Patterson, B. (1988). Spliceosomal snRNAs. Annual Review of Genetics 22, 387-419.
19. Haymon, R. M., Koski, R. A., and Sinclair, C. (1984). Fossils of hydrothermal vent worms from cretaceous sulfide ores of the Samail Ophiolite. Oman. Science 223, 1407-1409.
20. Hillis, D. M., and Dixon, M. T. (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. Quarterly Review of Biology 66, 411-453.
21. Hillis, D. M., and Huelsenbeck, J. P. (1992). Signal, noise and reliability in molecular phylogenetic analyses. Journal of Heredity 83, 189-195.
22. Howell, B. F. (1953). New Permian terebellid worm. Bulletin of the Wagner Free Institute of Science 28, 25-28.
23. Huelsenbeck, J. P., Bull, J. J., and Cunningham, C. W. (1996). Combining data in phylogenetic analysis. Trends in Ecology and Evolution 11, 152-158.
24. Kluge, A. G. (1998). Total evidence or taxonomic congruence: cladistics of consensus classification. Cladistics 14, 151-158.
25. Kojima, S. (1998). Paraphyletic status of Polychaeta suggested by phylogenetic analysis based on the amino acid sequences of Elongation Factor 1-alpha. Molecular Phylogenetics and Evolution 9, 255-261.
26. Kojima, S., Hashimoto, T., Hasegawa, M., Murata, S., Ohta, S., Seki, H., and Okada, N. (1993). Close phylogenetic relationship between Vestimentifera (tube worms) and Annelida revealed by the amino acid sequence of Elongation Factor I (alpha). Journal of Molecular Evolution 37, 66-70.
27. Kumar, S., Tamura, K., and Nei, M. (1993). 'MEGA: Molecular Evolutionary Genetics Analysis. Version 1.01.' (The Pennsylvania State University: University Park. Pennsylvania.)
28. Littlewood, D. T. J. (1994). Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences. Molecular Phylogenetics and Evolution 3, 221-229.
29. Liwanow, N. A., and Porfirjewa, N. A. (1967). Die Organisation der Pogonophoren und deren Beziehungen zu den Polychäten. Biologisches Zentralblatt 86, 177-204.
30. Maddison, W. P., and Maddison, D. R. (1992). 'McCLADE. Version 3.0.' (Sinauer Associates: Sunderland, Massachusetts.)
31. Maxson, R., Cohn, R., Kedes, L., and Mohun, T. (1983). Expression and organisation of histone genes. Annual Review of Genetics 17, 239-277.
32. McHugh, D. (1997). Molecular evidence that echiurans and pogonophorans are derived annelids. Proceedings of the National Academy of Science of the U.S.A. 94, 8006-8009.
33. McInerney, J. (1997). 'GCUA: General Codon Usage Analysis. Version 1.1.' (The Natural History Museum: London.)
34. Meyer, K., and Bartolomaeus, T. (1996). Ultrastructure and formation of the hooked setae in Owenia fusiformis delle Chiaje, 1842 - implications for annelid phylogeny. Canadian Journal of Zoology 74, 2143-2153.
35. Nielsen, C. (1995). 'Animal Evolution.' (Oxford University Press: Oxford.)
36. Pleijel, F. (1995). On character coding for phylogeny reconstruction. Cladistics 11, 309-315.
37. Powell, J. R., and Moriyama, E. N. (1997). Evolution of codon usage bias in Drosophila. Proceedings of the National Academy of Science of the U.S.A. 94, 7784-7790.
38. Prager, E. M., and Wilson, A. C. (1988). Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences. Journal of Molecular Evolution 27, 326-335.
39. Purschke, G. (1997). Ultrastructure of the nuchal organs in polychaetes (Annelida) - new results and review. Acta Zoologica, Stockholm 78, 123-143.
40. Rosenberg, G., Tillier, S., Tillier, A., Kuncio, G. S., Hanion, R. T., Masselot, M., and Williams, C. J. (1997). Rihosomal RNA phylogeny of selected major clades in the Mollusca. Journal of Molluscan Studies 63, 301-309.
41. Rouse, G. W. (1999). Trochophore concepts: ciliary bands and the evolution of larvae in spiralian Metazoa. Biological Journal of the Linnean Society 66, 411-464.
42. Rouse, G. W., and Fauchald, K. (1995). The articulation of annelids. Zoologica. Scripta 24, 269-301.
43. Rouse, G. W. and Fauchald, K. (1997). Cladistics and polychaetes. Zoologica Scripta 26, 139-204.
44. Rouse, G. W. and Fauchald, K. (1998). Recent views on the status, delineation and classification of the Annelida. American Zoologist 38, 953-964.
45. Saghai-Maroof, M. A., Soliman, K. M., Jorgensen, R. A., and Allard, R. W. (1984). Ribosomal DNA spacer length variation in barley: Mendelian inheritance, chromosomal location and population dynamics. Proceedings of the National Academy of Science of the U.S.A. 81, 8018-8021.
46. Shields, D. C., Sharp, P. M., Higgins, D. G., and Wright, F. (1988). 'Silent' sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Molecular Biology and Evolution 5, 704-716.
47. Siddall, M. E., Fitzhugh, K., and Coates, K. A. (1998). Problems concerning the phylogenetic position of the echiurans and pogonophorans with limited data. Cladistics 14, 401-410.
48. Sluiter, C. P. (1882). Über einen indischen Sternaspis und seine Verwandschaft zu den Echiuren. Natuurkundig Tijdschrift Nederlandsch-Indie 4, 235-287.
49. Swofford, D. L. (1993). 'PAUP: Phylogenetic Analysis Using Parsimony. Version 3.1.' (Illinois Natural History Survey: Champaign.)
50. Swofford, D. L. (1999). 'PAUP: Phylogenetic Analysis Using Parsimony. Version 4.0.' (Laboratory of Molecular Systematics, Smithsonian Institution: Washington, DC.)
51. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-3680.
52. Tillier, S., Masselot, M., Guerdoux, J., and Tillier, A. (1994). Monophyly of major gastropod taxa tested from partial 28S rRNA sequences, with emphasis on Euthyneura and hot-vent limpets Peltospiroidea. Nautilus 108, Supplement 2, 122-140.
53. Westheide, W. (1997). The direction of evolution within the Polychaeta. Journal of Natural History 31, 1-15.
54. Wheeler, W. C. (1997). Sampling, groundplans, total evidence and the systematic of arthropods. In 'Arthropod Relationships'. (Eds R. A. Fortey and R. H. Thomas.) Systematics Association Special Volume Series 55, pp. 87-96. (Chapman and Hall: London.)
55. Wheeler, W. C. (1998). Molecular Systematics and arthropods. In 'Arthropod Fossils and Phylogeny'. (Ed. G. D. Edgecombe.) pp. 9-32. (Columbia University Press: New York.)
56. Wheeler, W. C., and Hayashi, C. Y. (1998). The phylogeny of the extant chelicerate orders. Cladistics 14, 173-192.
57. Wheeler, W. C., Cartwright, P., and Hayashi, C. Y. (1993) Arthropod phylogeny: a combined approach. Cladistics 9, 1-39.
58. Winnepenninckx, B. M. H., Van De Peer, Y., and Backeljau, T. (1998). Metazoan relationships on the basis of 18S rRNA sequences: a few years later... American Zoologist 38, 888-906.