Paraphyletic Status of Polychaeta Suggested by Phylogenetic Analysis Based on the Amino Acid Sequences of Elongation Factor-1α

Molecular Phylogenetics and Evolution

Volumn 9, Issue 2, 1998, Pages 255-261

  Kojima, Shigeaki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; ELONGATION FACTOR; ELONGATION FACTOR 1; PRIMER DNA;

AMINO ACID SEQUENCE; ANIMAL; ANNELID WORM; ARTICLE; CLASSIFICATION; GENETICS; LEECH; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOLLUSC; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYCHAETA; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; ANNELIDA; BASE SEQUENCE; DNA PRIMERS; DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; LEECHES; MOLECULAR SEQUENCE DATA; MOLLUSCA; OLIGOCHAETA; PEPTIDE ELONGATION FACTOR 1; PEPTIDE ELONGATION FACTORS; PHYLOGENY; POLYCHAETA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0032040372     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1997.0472     Document Type: Article

References (34)

1. Adachi, J. Hasegawa, M. 1994, MOLPHY: Programs for Molecular Phylogenetics, Institute of Statistical Mathematics, Tokyo.
2. Baldauf S. L., Palmer J. D., Doolittle W. F. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA. 93:1996;7749-7754.
3. Barnes R. S., Calow P., Olive P. J. W., Golding D. W. The Invertebrates: A New Synthesis. 1993;Blackwell Scientific Publication, Oxford.
4. Brusca R. C., Brusca G. J. Invertebrates. 1990;Sinauer.
5. Field K. G., Olsen G. J., Lane D. J., Giovannoni S. J., Ghiselin M. T., Raff E. C., Pace N. R., Raff R. A. Molecular phylogeny of the animal kingdom. Science. 239:1988;748-753.
6. Fauchald K. Polychaete phylogeny: A problem in protostome evolution. Syst. Zool. 23:1974;493-506.
7. Hasegawa M., Hashimoto T., Adachi J., Iwabe N., Miyata T. Early branchings in the evolution of eukaryotes: Ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data. J. Mol. Evol. 36:1993;380-388.
8. Hashimoto T., Nakamura Y., Kamaishi T., Nakamura F., Adachi J., Okamoto K., Hasegawa M. Phylogenetic place of a mitochondria-lacking protozoan,Giardia lamblia, Mol. Biol. Evol. 12:1995;782-793.
9. Hashimoto T., Nakamura Y., Nakamura F., Shikakura T., Adachi J., Goto N., Okamoto K., Hasegawa M. Protein phylogeny gives a robust estimation for early divergences of eukaryotes: Phylogenetic place of a mitochondria-lacking protozoan,Giardia lamblia. Mol. Biol. Evol. 11:1994;65-71.
10. Hills D. M., Bull J. J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 182:1993;182-192.
11. Hovemann B., Richter S., Walldorf U., Cziepluch C. Two genes encode related cytoplasmic elongation factor 1 alpha (EF-1 alpha) inDrosophila melanogaster. Nucleic Acids Res. 16:1988;3175-3194.
12. Iwabe N., Kuma K., Hasegawa M., Osawa S., Miyata T. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA. 86:1989;9355-9359.
13. Ivanov A. V. On the systematic position of Vestimentifera. Zool. Jb. Syst. 121:1994;409-456.
14. Jones M. L., Gardiner S. L. Evidence for a transit digestive tract in Vestimentifera. Proc. Biol. Soc. Wash. 101:1988;423-433.
15. Kamaishi T., Hashimoto T., Nakamura Y., Nakamura F., Murata S., Okada N., Okamoto K., Shimizu M., Hasegawa M. Protein phylogeny of EF-1α suggests microsporidians are extremely ancient eukaryotes. J. Mol. Evol. 42:1996;257-263.
16. Kobayashi M., Wada H., Satoh N. Early evolution of metazoa and phylogenetic status of diploblasts as inferred from amino acid sequence of elongation factor-1α Mol. Phylogenet. Evol. 5:1996;414-422.
17. Kojima S., Hashimoto T., Hasegawa M., Murata S., Ohta S., Seki H., Okada N. Close phylogenetic relationships between Vestimentifera (tube worm) and Annelida revealed by the amino acid sequence of elongation factor-1α J. Mol. Evol. 37:1993;66-70.
18. Kojima S., Segawa R., Hashimoto J., Ohta S. Molecular phylogeny of vestimentiferans collected around Japan revealed by the nucleotide sequences of mitochondrial DNA. Mar. Biol. 127:1997;507-513.
19. Krieg P. A., Varnum S. M., Wormington W. M., Melton D. A. The mRNA encoding elongation factor 1-α (EF-1α) is a major transcript at the midblastula transition inXenopus. Dev. Biol. 133:1989;93-100.
20. Kumar, S. Tamura, K. Nei, M. 1993, MEGA: Molecular Evolutionary Genetics Analysis, Pennsylvania State University, Pennsylvania.
21. Lenstra J. A., Van Vliet A., Van Hemert F. J., Arnberg A. C. Genes coding for the elongation factor EF-1 alpha inArtemia. Eur. J. Biochem. 149:1985;609-616.
22. Meglitsch P. A., Schram F. R. Invertebrate Zoology. 1991;Oxford Univ. Press, New York.
23. Moon S. Y., Kim C. B., Gelder S. R., Kim W. Phylogenetic positions of the aberrant branchiobdellidans and aphanoneurans within the Annelida as derived from 18S ribosomal RNA gene sequences. Hydrobiologia. 324:1996;229-236.
24. Nielsen C. Animal Evolution. Interrelationships of the Living Phyla. 1995;Oxford Univ. Press, New York.
25. Rouse G. W., Fauchald K. The articulation of annelids. Zool. Scripta. 24:1995;369-301.
26. Ruppert E. E., Barnes R. D. Invertebrate Zoology. 1994;Saunders College Publishing, Fort Worth.
27. Saitoh N., Nei M. The neighbour-joining method: A new method for constructing phylogenetic trees. Mol. Biol. Evol. 10:1987;471-483.
28. Southward E. C. Development of the gut and segmentation of newly settled stages ofRidgeia. J. Mar. Biol. Ass. U.K. 68:1988;465-487.
29. Southward E. C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean). J. Nat. Hist. 25:1991;859-881.
30. Suzuki T., Takagi T., Okuda K., Furukohri T., Ohta S. The deep-sea tube worm hemoglobin: subunit structure and phylogenetic relationship with annelid hemoglobin. Zool. Sci. 6:1989;915-956.
31. Wang H., Parent M., Morais R. Cloning and characterization of a cDNA encoding elongation factor 1α from chicken cells devoid of mitochondrial DNA. Gene. 140:1994;155-161.
32. Willmer, P. 1990, Invertebrate Relationships. Patterns in Animal Evolution, Cambridge Univ. Press, Cambridge.
33. Winnepenninckx B., Backeijau T., De Wachter R. Phylogeny of protostome worms derived from 18S rRNA sequences. Mol. Biol. Evol. 12:1995;641-649.
34. Young C. M., Vazquez E., Metaxas A., Tyler P. A. Embryology of vestimentiferan tube worms from deep-sea methane/sulphide seeps. Nature. 381:1996;514-516.