메뉴 건너뛰기




Volumn 48, Issue 2, 2008, Pages 628-645

Detecting possibly saturated positions in 18S and 28S sequences and their influence on phylogenetic reconstruction of Annelida (Lophotrochozoa)

Author keywords

Annelida; C factor; Iss; O E ratio; Phylogeny; rRNA; Saturation

Indexed keywords

RNA 18S; RNA 28S;

EID: 47749109433     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.05.015     Document Type: Article
Times cited : (80)

References (77)
  • 1
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G., Dwarkadas S., Huelsenbeck J.P., and Ronquist F. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20 (2004) 407-415
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 2
    • 21844496609 scopus 로고
    • Structure and formation of the uncini in Pectinaria koreni, Pectinaria auricoma (Terebellida) and Spirorbis spirorbis (Sabellida): implications for annelid phylogeny and the position of the Pogonophora
    • Bartolomaeus T. Structure and formation of the uncini in Pectinaria koreni, Pectinaria auricoma (Terebellida) and Spirorbis spirorbis (Sabellida): implications for annelid phylogeny and the position of the Pogonophora. Zoomorphology 115 (1995) 161-177
    • (1995) Zoomorphology , vol.115 , pp. 161-177
    • Bartolomaeus, T.1
  • 3
    • 33644867607 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the orbiniid polychaete Orbinia latreilli (Annelida, Orbiniidae)-a novel gene order for Annelida and implications for annelid phylogeny
    • Bleidorn C., Podsiadlowski L., and Bartolomaeus T. The complete mitochondrial genome of the orbiniid polychaete Orbinia latreilli (Annelida, Orbiniidae)-a novel gene order for Annelida and implications for annelid phylogeny. Gene 370 (2006) 96-103
    • (2006) Gene , vol.370 , pp. 96-103
    • Bleidorn, C.1    Podsiadlowski, L.2    Bartolomaeus, T.3
  • 4
    • 0042859957 scopus 로고    scopus 로고
    • A contribution to sedentary polychaete phylogeny using 18S rRNA sequence data
    • Bleidorn C., Vogt L., and Bartolomaeus T. A contribution to sedentary polychaete phylogeny using 18S rRNA sequence data. J. Syst. Zool. Evol. Res. 41 (2003) 186-195
    • (2003) J. Syst. Zool. Evol. Res. , vol.41 , pp. 186-195
    • Bleidorn, C.1    Vogt, L.2    Bartolomaeus, T.3
  • 5
    • 1242270885 scopus 로고    scopus 로고
    • New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences
    • Bleidorn C., Vogt L., and Bartolomaeus T. New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences. Mol. Phylogenet. Evol. 29 (2003) 279-288
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 279-288
    • Bleidorn, C.1    Vogt, L.2    Bartolomaeus, T.3
  • 6
    • 15944387054 scopus 로고    scopus 로고
    • Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes
    • Bleidorn C., Vogt L., and Bartolomaeus T. Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes. Mol. Phylogenet. Evol. 34 (2005) 673-679
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 673-679
    • Bleidorn, C.1    Vogt, L.2    Bartolomaeus, T.3
  • 7
    • 0032749338 scopus 로고    scopus 로고
    • Assessing the usefulness of histone H3, U2 snRNA and 28S rDNA in analyses of polychaete relationships
    • Brown S., Rouse G.W., Hutchings P., and Colgan D. Assessing the usefulness of histone H3, U2 snRNA and 28S rDNA in analyses of polychaete relationships. Aust. J. Zool. 47 (1999) 499-516
    • (1999) Aust. J. Zool. , vol.47 , pp. 499-516
    • Brown, S.1    Rouse, G.W.2    Hutchings, P.3    Colgan, D.4
  • 8
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17 (2000) 540-552
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 10
    • 22844439075 scopus 로고    scopus 로고
    • Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics
    • Collins T.M., Fedrigo O., and Naylor G.J.P. Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics. Syst. Biol. 54 (2005) 493-500
    • (2005) Syst. Biol. , vol.54 , pp. 493-500
    • Collins, T.M.1    Fedrigo, O.2    Naylor, G.J.P.3
  • 11
    • 33845472296 scopus 로고    scopus 로고
    • Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data
    • Crowe T.M., Bowie R.C.K., Bloomer P., Mandiwana T.G., Hedderson T.A.J., Randi E., Pereira S.L., and Wakeling J. Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data. Cladistics 22 (2006) 495-532
    • (2006) Cladistics , vol.22 , pp. 495-532
    • Crowe, T.M.1    Bowie, R.C.K.2    Bloomer, P.3    Mandiwana, T.G.4    Hedderson, T.A.J.5    Randi, E.6    Pereira, S.L.7    Wakeling, J.8
  • 12
    • 18844372221 scopus 로고    scopus 로고
    • Phylogeny of oligochaetous Clitellata
    • Erséus C. Phylogeny of oligochaetous Clitellata. Hydrobiologia 535/536 (2005) 357-372
    • (2005) Hydrobiologia , Issue.535-536 , pp. 357-372
    • Erséus, C.1
  • 13
    • 1542349081 scopus 로고    scopus 로고
    • 18S rDNA phylogeny of Clitellata (Annelida)
    • Erséus C., and Kallersjo M. 18S rDNA phylogeny of Clitellata (Annelida). Zool. Scr. 33 (2004) 187-196
    • (2004) Zool. Scr. , vol.33 , pp. 187-196
    • Erséus, C.1    Kallersjo, M.2
  • 14
    • 0031284703 scopus 로고    scopus 로고
    • Polychaete systematics: past and present
    • Fauchald K., and Rouse G. Polychaete systematics: past and present. Zool. Scr. 26 (1997) 71-138
    • (1997) Zool. Scr. , vol.26 , pp. 71-138
    • Fauchald, K.1    Rouse, G.2
  • 15
    • 26444612274 scopus 로고    scopus 로고
    • Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous
    • Gadagkar S.R., and Kumar S. Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous. Mol. Biol. Evol. 22 (2005) 2139-2141
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2139-2141
    • Gadagkar, S.R.1    Kumar, S.2
  • 16
    • 0032805771 scopus 로고    scopus 로고
    • Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa
    • Gatesy J., O'Grady P., and Baker R.H. Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa. Cladistics 15 (1999) 271-313
    • (1999) Cladistics , vol.15 , pp. 271-313
    • Gatesy, J.1    O'Grady, P.2    Baker, R.H.3
  • 17
    • 0027665678 scopus 로고
    • The phylogenetic utility of cytochrome b: lessons from bufonid frogs
    • Graybeal A. The phylogenetic utility of cytochrome b: lessons from bufonid frogs. Mol. Phylogenet. Evol. 2 (1993) 256-269
    • (1993) Mol. Phylogenet. Evol. , vol.2 , pp. 256-269
    • Graybeal, A.1
  • 19
    • 0032969991 scopus 로고    scopus 로고
    • Multiple substitutions affect the phylogenetic utility of cytochrome b and 12S rDNA data: examining a rapid radiation in leporid (Lagomorpha) evolution
    • Halanych K.M., and Robinson T.J. Multiple substitutions affect the phylogenetic utility of cytochrome b and 12S rDNA data: examining a rapid radiation in leporid (Lagomorpha) evolution. J. Mol. Evol. 48 (1999) 369-379
    • (1999) J. Mol. Evol. , vol.48 , pp. 369-379
    • Halanych, K.M.1    Robinson, T.J.2
  • 20
    • 14544277657 scopus 로고    scopus 로고
    • Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences
    • Hall B.G. Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences. Mol. Biol. Evol. 22 (2005) 792-802
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 792-802
    • Hall, B.G.1
  • 21
    • 7544232786 scopus 로고    scopus 로고
    • Further phylogenetic studies of the Polychaeta using 18S rDNA sequence data
    • Hall K.A., Hutchings P.A., and Colgan D.J. Further phylogenetic studies of the Polychaeta using 18S rDNA sequence data. J. Mar. Biol. Ass. UK 84 (2004) 949-960
    • (2004) J. Mar. Biol. Ass. UK , vol.84 , pp. 949-960
    • Hall, K.A.1    Hutchings, P.A.2    Colgan, D.J.3
  • 22
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
    • Hassouna N., Michot B., and Bachellerie J.-P. The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res. 12 (1984) 3563-3583
    • (1984) Nucleic Acids Res. , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.-P.3
  • 23
    • 0002736736 scopus 로고
    • The systematic position of the Archiannelida
    • Hermans C.O. The systematic position of the Archiannelida. Syst. Zool. 18 (1969) 85-102
    • (1969) Syst. Zool. , vol.18 , pp. 85-102
    • Hermans, C.O.1
  • 24
    • 57249109855 scopus 로고    scopus 로고
    • Metameric organisation of the nervous system in developmental stages of Urechis caupo (Echiura) and its phylogenetic implications
    • Hessling R. Metameric organisation of the nervous system in developmental stages of Urechis caupo (Echiura) and its phylogenetic implications. Zoomorphology 121 (2002) 221-234
    • (2002) Zoomorphology , vol.121 , pp. 221-234
    • Hessling, R.1
  • 25
    • 0026300584 scopus 로고
    • Ribosomal DNA: molecular evolution and phylogenetic inference
    • Hillis D.M., and Dixon M.T. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66 (1991) 411-453
    • (1991) Q. Rev. Biol. , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 26
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulation
    • Huelsenbeck J.P. Performance of phylogenetic methods in simulation. Syst. Biol. 44 (1995) 17-48
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 27
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 28
    • 9644252735 scopus 로고    scopus 로고
    • Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata ("Polychaeta", Annelida) based on 18S rDNA, 28S rDNA and COI sequences
    • Jördens J., Struck T.H., and Purschke G. Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata ("Polychaeta", Annelida) based on 18S rDNA, 28S rDNA and COI sequences. Journal of Zoological Systematics and Evolutionary Research 42 (2004) 270-280
    • (2004) Journal of Zoological Systematics and Evolutionary Research , vol.42 , pp. 270-280
    • Jördens, J.1    Struck, T.H.2    Purschke, G.3
  • 29
    • 0032773940 scopus 로고    scopus 로고
    • Homoplasy increases phylogenetic structure
    • Källersjö M., Albert V.A., and Farris J.S. Homoplasy increases phylogenetic structure. Cladistics 15 (1999) 91-93
    • (1999) Cladistics , vol.15 , pp. 91-93
    • Källersjö, M.1    Albert, V.A.2    Farris, J.S.3
  • 30
    • 0028177080 scopus 로고
    • A simulation comparison phylogeny algorithms under equal and unequal evolutionary rates
    • Kuhner M.K., and Felsenstein J. A simulation comparison phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11 (1994) 459-468
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 31
    • 0028181246 scopus 로고
    • Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances
    • Lake J.A. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91 (1994) 1455-1459
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1455-1459
    • Lake, J.A.1
  • 32
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart P.J., Steel M.A., Hendy M.D., and Penny D. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11 (1994) 605-612
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 33
    • 0032825223 scopus 로고    scopus 로고
    • The root of the tree of life in the light of the covarion model
    • Lopez P., Forterre P., and Philippe H. The root of the tree of life in the light of the covarion model. J. Mol. Evol. 49 (1999) 496-508
    • (1999) J. Mol. Evol. , vol.49 , pp. 496-508
    • Lopez, P.1    Forterre, P.2    Philippe, H.3
  • 34
    • 47749087120 scopus 로고    scopus 로고
    • Maddison, W.P., Maddison, D.R. 2004. Mesquite: a modular system for evolutionary analysis. Version 1.05. http://mesquiteproject.org.
    • Maddison, W.P., Maddison, D.R. 2004. Mesquite: a modular system for evolutionary analysis. Version 1.05. http://mesquiteproject.org.
  • 36
    • 0030794974 scopus 로고    scopus 로고
    • Molecular evidence that echiurans and pogonophorans are derived annelids
    • McHugh D. Molecular evidence that echiurans and pogonophorans are derived annelids. Proc. Natl. Acad. Sci. USA 94 (1997) 8006-8009
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 8006-8009
    • McHugh, D.1
  • 37
    • 0033676221 scopus 로고    scopus 로고
    • Molecular phylogeny of the Annelida
    • McHugh D. Molecular phylogeny of the Annelida. Can. J. Zool. 78 (2000) 1873-1884
    • (2000) Can. J. Zool. , vol.78 , pp. 1873-1884
    • McHugh, D.1
  • 38
    • 18844435621 scopus 로고    scopus 로고
    • Molecular systematics of polychaetes (Annelida)
    • McHugh D. Molecular systematics of polychaetes (Annelida). Hydrobiologia (2005) 309-318
    • (2005) Hydrobiologia , pp. 309-318
    • McHugh, D.1
  • 39
    • 0030469275 scopus 로고    scopus 로고
    • Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in Cetaceans
    • Milinkovitch M.C., LeDuc R.G., Adachi J., Farnir F., Georges M., and Hasegawa M. Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in Cetaceans. Genetics 144 (1996) 1817-1833
    • (1996) Genetics , vol.144 , pp. 1817-1833
    • Milinkovitch, M.C.1    LeDuc, R.G.2    Adachi, J.3    Farnir, F.4    Georges, M.5    Hasegawa, M.6
  • 40
    • 47749084740 scopus 로고    scopus 로고
    • Nicholas, K.B., Nicholas, H.B.J. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Distributed by the author.
    • Nicholas, K.B., Nicholas, H.B.J. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Distributed by the author.
  • 41
    • 0033638953 scopus 로고    scopus 로고
    • Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants
    • Nickrent D.L., Parkinson C.L., Palmer J.D., and Duff R.J. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol. Biol. Evol. 17 (2000) 1885-1895
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1885-1895
    • Nickrent, D.L.1    Parkinson, C.L.2    Palmer, J.D.3    Duff, R.J.4
  • 42
    • 47749148882 scopus 로고    scopus 로고
    • Nylander, J.A.A. (2002) MrModeltest. http://morphbank.ebc.uu.se/MR.BAYES.
    • Nylander, J.A.A. (2002) MrModeltest. http://morphbank.ebc.uu.se/MR.BAYES.
  • 43
    • 0026634346 scopus 로고
    • The evolution of the mitochondrial D-Loop and the origin of modern man
    • Pesole G., Sbisà E., Preparata G., and Saccone C. The evolution of the mitochondrial D-Loop and the origin of modern man. Mol. Biol. Evol. 9 (1992) 587-598
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 587-598
    • Pesole, G.1    Sbisà, E.2    Preparata, G.3    Saccone, C.4
  • 44
    • 0032874259 scopus 로고    scopus 로고
    • The rooting of the universal tree of life is not reliable
    • Philippe H., and Forterre P. The rooting of the universal tree of life is not reliable. J. Mol. Evol. 49 (1999) 509-523
    • (1999) J. Mol. Evol. , vol.49 , pp. 509-523
    • Philippe, H.1    Forterre, P.2
  • 45
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests
    • Posada D., and Buckley T.R. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst. Biol. 53 (2004) 793-808
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 46
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 47
    • 0035527410 scopus 로고    scopus 로고
    • Selecting the best-fit model of nucleotide substitution
    • Posada D., and Crandall K.A. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50 (2001) 580-601
    • (2001) Syst. Biol. , vol.50 , pp. 580-601
    • Posada, D.1    Crandall, K.A.2
  • 48
    • 0036034660 scopus 로고    scopus 로고
    • On the ground pattern of Annelida
    • Purschke G. On the ground pattern of Annelida. Org. Divers. Evol. 2 (2002) 181-196
    • (2002) Org. Divers. Evol. , vol.2 , pp. 181-196
    • Purschke, G.1
  • 49
    • 18844373426 scopus 로고
    • Anatomy and ultrastructure of the ventral pharyngeal organs of Saccocirrus (Saccocirridae) and Protodriloides (Protodriloidae fam. n.) with remarks on the phylogenetic relationships within Protodrilida (Annelida: Polychaeta)
    • Purschke G., and Jouin C. Anatomy and ultrastructure of the ventral pharyngeal organs of Saccocirrus (Saccocirridae) and Protodriloides (Protodriloidae fam. n.) with remarks on the phylogenetic relationships within Protodrilida (Annelida: Polychaeta). J. Zool. 215 (1988) 405-432
    • (1988) J. Zool. , vol.215 , pp. 405-432
    • Purschke, G.1    Jouin, C.2
  • 50
    • 0030857448 scopus 로고    scopus 로고
    • Molecular phylogeny of the major arthropod groups indicates polyphyly of crustaceans and a new hypothesis for the origin of hexapods
    • Regier J., and Shultz J. Molecular phylogeny of the major arthropod groups indicates polyphyly of crustaceans and a new hypothesis for the origin of hexapods. Mol. Biol. Evol. 14 (1997) 902-913
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 902-913
    • Regier, J.1    Shultz, J.2
  • 51
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 52
    • 0031284707 scopus 로고    scopus 로고
    • Cladistics and polychaetes
    • Rouse G.W., and Fauchald K. Cladistics and polychaetes. Zool. Scr. 26 (1997) 139-204
    • (1997) Zool. Scr. , vol.26 , pp. 139-204
    • Rouse, G.W.1    Fauchald, K.2
  • 55
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Simon C., Frati F., Beckenbach A.T., Crespi B., Liu H., and Flook P. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87 (1994) 651-701
    • (1994) Ann. Entomol. Soc. Am. , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.T.3    Crespi, B.4    Liu, H.5    Flook, P.6
  • 56
    • 39049085264 scopus 로고    scopus 로고
    • Data congruence, paedomorphosis and salamanders
    • Struck T.H. Data congruence, paedomorphosis and salamanders. Front. Zool. 4 (2007) 22
    • (2007) Front. Zool. , vol.4 , pp. 22
    • Struck, T.H.1
  • 57
    • 26444431761 scopus 로고    scopus 로고
    • Dinophilidae (Annelida) is most likely not a progenetic Eunicida: evidence from 18S and 28S rDNA
    • Struck T.H., Halanych K.M., and Purschke G. Dinophilidae (Annelida) is most likely not a progenetic Eunicida: evidence from 18S and 28S rDNA. Mol. Phylogenet. Evol. 37 (2005) 619-623
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 619-623
    • Struck, T.H.1    Halanych, K.M.2    Purschke, G.3
  • 58
    • 0036737563 scopus 로고    scopus 로고
    • The phylogenetic position of the Aeolosomatidae and Parergodrilidae, two enigmatic oligochaete-like taxa of the 'Polychaeta', based on molecular data from 18SrDNA sequences
    • Struck T.H., Hessling R., and Purschke G. The phylogenetic position of the Aeolosomatidae and Parergodrilidae, two enigmatic oligochaete-like taxa of the 'Polychaeta', based on molecular data from 18SrDNA sequences. J. Zool. Syst. Evol. Res. 40 (2002) 155-163
    • (2002) J. Zool. Syst. Evol. Res. , vol.40 , pp. 155-163
    • Struck, T.H.1    Hessling, R.2    Purschke, G.3
  • 59
    • 20044383252 scopus 로고    scopus 로고
    • The sister group relationship of Aeolosomatidae and Potamodrilidae (Annelida: "Polychaeta")-a molecular phylogenetic approach based on 18S rDNA and Cytochrome Oxidase I
    • Struck T.H., and Purschke G. The sister group relationship of Aeolosomatidae and Potamodrilidae (Annelida: "Polychaeta")-a molecular phylogenetic approach based on 18S rDNA and Cytochrome Oxidase I. Zool. Anz. 243 (2005) 281-293
    • (2005) Zool. Anz. , vol.243 , pp. 281-293
    • Struck, T.H.1    Purschke, G.2
  • 60
    • 33644585312 scopus 로고    scopus 로고
    • Phylogeny of Eunicida (Annelida) and Exploring Data Congruence using a Partition Addition Bootstrap Alteration (PABA) approach
    • Struck T.H., Purschke G., and Halanych K.M. Phylogeny of Eunicida (Annelida) and Exploring Data Congruence using a Partition Addition Bootstrap Alteration (PABA) approach. Syst. Biol. 55 (2006) 1-20
    • (2006) Syst. Biol. , vol.55 , pp. 1-20
    • Struck, T.H.1    Purschke, G.2    Halanych, K.M.3
  • 62
    • 0036393952 scopus 로고    scopus 로고
    • Progenesis in Eunicida ("Polychaeta," Annelida)-separate evolutionary events? Evidence from molecular data
    • Struck T.H., Westheide W., and Purschke G. Progenesis in Eunicida ("Polychaeta," Annelida)-separate evolutionary events? Evidence from molecular data. Mol. Phylogenet. Evol. 25 (2002) 190-199
    • (2002) Mol. Phylogenet. Evol. , vol.25 , pp. 190-199
    • Struck, T.H.1    Westheide, W.2    Purschke, G.3
  • 63
    • 0026616205 scopus 로고
    • Genetic divergence, speciation and morphological stasis in a lineage of African cichlid fishes
    • Sturmbauer C., and Meyer A. Genetic divergence, speciation and morphological stasis in a lineage of African cichlid fishes. Nature 358 (1992) 578-581
    • (1992) Nature , vol.358 , pp. 578-581
    • Sturmbauer, C.1    Meyer, A.2
  • 64
    • 47749127785 scopus 로고    scopus 로고
    • Swofford, D.L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, MA.
    • Swofford, D.L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, MA.
  • 65
    • 0001336205 scopus 로고    scopus 로고
    • Chapter 11-phylogenetic inference
    • Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer Associates, Sunderland, MA
    • Swofford D.L., Olsen G.J., Waddell P.J., and Hillis D.M. Chapter 11-phylogenetic inference. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics (1996), Sinauer Associates, Sunderland, MA 407-514
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 66
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 67
    • 33746466516 scopus 로고    scopus 로고
    • Fine structure of the pharyngeal apparatus of the pelagosphera larva in Phascolosoma agassizii (Sipuncula) and its phylogenetic significance
    • Tzetlin A., and Purschke G. Fine structure of the pharyngeal apparatus of the pelagosphera larva in Phascolosoma agassizii (Sipuncula) and its phylogenetic significance. Zoomorphology 125 (2006) 109-117
    • (2006) Zoomorphology , vol.125 , pp. 109-117
    • Tzetlin, A.1    Purschke, G.2
  • 68
    • 0036455106 scopus 로고    scopus 로고
    • Testing and weighting characters
    • Vogt L. Testing and weighting characters. Org. Diversity Evol. 2 (2002) 319-333
    • (2002) Org. Diversity Evol. , vol.2 , pp. 319-333
    • Vogt, L.1
  • 69
    • 0030618676 scopus 로고    scopus 로고
    • The direction of evolution within the Polychaeta
    • Westheide W. The direction of evolution within the Polychaeta. J. Nat. Hist. 31 (1997) 1-15
    • (1997) J. Nat. Hist. , vol.31 , pp. 1-15
    • Westheide, W.1
  • 70
    • 0033562077 scopus 로고    scopus 로고
    • Systematization of the Annelida: different approaches
    • Westheide W., McHugh D., Purschke G., and Rouse G. Systematization of the Annelida: different approaches. Hydrobiologia 402 (1999) 291-307
    • (1999) Hydrobiologia , vol.402 , pp. 291-307
    • Westheide, W.1    McHugh, D.2    Purschke, G.3    Rouse, G.4
  • 71
    • 18544375949 scopus 로고    scopus 로고
    • Phylogenetic position of Nerillidae and Aberranta (Polychaeta, Annelida), analysed by direct optimization of combined molecular and morphological data
    • Worsaae K., Nygren A., Rouse G., Giribet G., Persson J., Sundberg P., and Pleijel F. Phylogenetic position of Nerillidae and Aberranta (Polychaeta, Annelida), analysed by direct optimization of combined molecular and morphological data. Zool. Scr. 34 (2005) 313-328
    • (2005) Zool. Scr. , vol.34 , pp. 313-328
    • Worsaae, K.1    Nygren, A.2    Rouse, G.3    Giribet, G.4    Persson, J.5    Sundberg, P.6    Pleijel, F.7
  • 72
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • Wuyts J., Van de Peer Y., and De Wachter R. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids Res. 29 (2001) 5017-5028
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5017-5028
    • Wuyts, J.1    Van de Peer, Y.2    De Wachter, R.3
  • 74
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10 (1993) 1396-1401
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 75
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol. Evol. 11 (1996) 367-372
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 367-372
    • Yang, Z.1
  • 76
    • 0001619105 scopus 로고    scopus 로고
    • Vertebrate phylogeny: limits of inference of mitochondrial genome and nuclear rDNA sequence data due to an adverse phylogenetic signal/noise ratio
    • Ahlberg P.E. (Ed), Taylor & Francis, London
    • Zardoya R., and Meyer A. Vertebrate phylogeny: limits of inference of mitochondrial genome and nuclear rDNA sequence data due to an adverse phylogenetic signal/noise ratio. In: Ahlberg P.E. (Ed). Major Events in Early Vertebrate Evolution: Palaeontology, Phylogeny, Genetics, and Development (2001), Taylor & Francis, London 135-155
    • (2001) Major Events in Early Vertebrate Evolution: Palaeontology, Phylogeny, Genetics, and Development , pp. 135-155
    • Zardoya, R.1    Meyer, A.2
  • 77
    • 47749148881 scopus 로고    scopus 로고
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation., The University of Texas at Austin.
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation., The University of Texas at Austin.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.