-
1
-
-
49449094873
-
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
-
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Segurens B, Steinbach D (2008) Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol 26:909-9155
-
(2008)
Nat Biotechnol
, vol.26
, pp. 909-915
-
-
Abad, P.1
Gouzy, J.2
Aury, J.M.3
Castagnone-Sereno, P.4
Danchin, E.G.5
Deleury, E.6
Perfus-Barbeoch, L.7
Anthouard, V.8
Artiguenave, F.9
Blok, V.C.10
Caillaud, M.C.11
Coutinho, P.M.12
Dasilva, C.13
De Luca, F.14
Deau, F.15
Esquibet, M.16
Flutre, T.17
Goldstone, J.V.18
Hamamouch, N.19
Hewezi, T.20
Jaillon, O.21
Jubin, C.22
Leonetti, P.23
Magliano, M.24
Maier, T.R.25
Markov, G.V.26
McVeigh, P.27
Pesole, G.28
Poulain, J.29
Robinson-Rechavi, M.30
Sallet, E.31
Segurens, B.32
Steinbach, D.33
more..
-
2
-
-
65549101705
-
TEclass - A tool for automated classification of unknown eukaryotic transposable elements
-
Abrusan G, Grundmann N, DeMester L, Makalowski W (2009) TEclass-a tool for automated classification of unknown eukaryotic transposable elements. Bioinformatics 25:1329-13300
-
(2009)
Bioinformatics
, vol.25
, pp. 1329-1330
-
-
Abrusan, G.1
Grundmann, N.2
DeMester, L.3
Makalowski, W.4
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-34022
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
80052319576
-
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea
-
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quevillon E, Sharon A, Simon A, (2011) Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet 7:e10022300
-
(2011)
PLoS Genet
, vol.7
-
-
Amselem, J.1
Cuomo, C.A.2
Van Kan, J.A.3
Viaud, M.4
Benito, E.P.5
Couloux, A.6
Coutinho, P.M.7
De Vries, R.P.8
Dyer, P.S.9
Fillinger, S.10
Fournier, E.11
Gout, L.12
Hahn, M.13
Kohn, L.14
Lapalu, N.15
Plummer, K.M.16
Pradier, J.M.17
Quevillon, E.18
Sharon, A.19
Simon, A.20
more..
-
5
-
-
0036673472
-
Automated de novo identification of repeat sequence families in sequenced genomes
-
Bao Z, Eddy SR (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res 12:1269-12766
-
(2002)
Genome Res
, vol.12
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
6
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson G (1999) Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res 27:573-5800
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
7
-
-
36549035839
-
Discovering and detecting transposable elements in genome sequences
-
Bergman CM, Quesneville H (2007) Discovering and detecting transposable elements in genome sequences. Brief Bioinform 8:382-3922
-
(2007)
Brief Bioinform
, vol.8
, pp. 382-392
-
-
Bergman, C.M.1
Quesneville, H.2
-
8
-
-
33847749916
-
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
-
Bergman CM, Quesneville H, Anxolabehere D, Ashburner M (2006) Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol 7:R1122
-
(2006)
Genome Biol
, vol.7
-
-
Bergman, C.M.1
Quesneville, H.2
Anxolabehere, D.3
Ashburner, M.4
-
9
-
-
0036900274
-
Patterns of insertion and deletion in contrasting chromatin domains
-
Blumenstiel JP, Hartl DL, Lozovsky ER (2002) Patterns of insertion and deletion in contrasting chromatin domains. Mol Biol Evol 19:2211-22255
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2211-2225
-
-
Blumenstiel, J.P.1
Hartl, D.L.2
Lozovsky, E.R.3
-
10
-
-
71749094924
-
Transposable elements in gene regulation and in the evolution of vertebrate genomes
-
Bourque G (2009) Transposable elements in gene regulation and in the evolution of vertebrate genomes. Curr Opin Genet Dev 19:607-6122
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 607-612
-
-
Bourque, G.1
-
11
-
-
22444439135
-
An Arabidopsis hAT-like transposase is essential for plant development
-
Bundock P, Hooykaas P (2005) An Arabidopsis hAT-like transposase is essential for plant development. Nature 436:282-2844
-
(2005)
Nature
, vol.436
, pp. 282-284
-
-
Bundock, P.1
Hooykaas, P.2
-
12
-
-
32044447172
-
Identification of transposable elements using multiple alignments of related genomes
-
Caspi A, Pachter L (2006) Identification of transposable elements using multiple alignments of related genomes. Genome Res 16:260-2700
-
(2006)
Genome Res
, vol.16
, pp. 260-270
-
-
Caspi, A.1
Pachter, L.2
-
13
-
-
62549105255
-
MUST: A system for identification of miniature invertedrepeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi
-
Chen Y, Zhou F, Li G, Xu Y (2009) MUST: A system for identification of miniature invertedrepeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi. Gene 436:1-77
-
(2009)
Gene
, vol.436
, pp. 1-77
-
-
Chen, Y.1
Zhou, F.2
Li, G.3
Xu, Y.4
-
15
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-2188
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
Markow, T.A.6
Kaufman, T.C.7
Kellis, M.8
Gelbart, W.9
Iyer, V.N.10
Pollard, D.A.11
Sackton, T.B.12
Larracuente, A.M.13
Singh, N.D.14
Abad, J.P.15
Abt, D.N.16
Adryan, B.17
Aguade, M.18
Akashi, H.19
Anderson, W.W.20
Aquadro, C.F.21
Ardell, D.H.22
Arguello, R.23
Artieri, C.G.24
Barbash, D.A.25
Barker, D.26
Barsanti, P.27
more..
-
16
-
-
34548669353
-
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
-
Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Kupper FC, Lang D (2007) The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317:1400-14022
-
(2007)
Science
, vol.317
, pp. 1400-1402
-
-
Cock, J.M.1
Sterck, L.2
Rouze, P.3
Scornet, D.4
Allen, A.E.5
Amoutzias, G.6
Anthouard, V.7
Artiguenave, F.8
Aury, J.M.9
Badger, J.H.10
Beszteri, B.11
Billiau, K.12
Bonnet, E.13
Bothwell, J.H.14
Bowler, C.15
Boyen, C.16
Brownlee, C.17
Carrano, C.J.18
Charrier, B.19
Cho, G.Y.20
Coelho, S.M.21
Collen, J.22
Corre, E.23
Da Silva, C.24
Delage, L.25
Delaroque, N.26
Dittami, S.M.27
Doulbeau, S.28
Elias, M.29
Farnham, G.30
Gachon, C.M.31
Gschloessl, B.32
Heesch, S.33
Jabbari, K.34
Jubin, C.35
Kawai, H.36
Kimura, K.37
Kloareg, B.38
Kupper, F.C.39
Lang, D.40
more..
-
17
-
-
40549086282
-
Computational prediction and molecular confirmation of Helitron transposons in the maize genome
-
Du C, Caronna J, He L, Dooner HK (2008) Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics 9:511
-
(2008)
BMC Genomics
, vol.9
, pp. 511
-
-
Du, C.1
Caronna, J.2
He, L.3
Dooner, H.K.4
-
18
-
-
79959340303
-
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
-
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kues U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci USA 108:9166-91711
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 9166-9171
-
-
Duplessis, S.1
Cuomo, C.A.2
Lin, Y.C.3
Aerts, A.4
Tisserant, E.5
Veneault-Fourrey, C.6
Joly, D.L.7
Hacquard, S.8
Amselem, J.9
Cantarel, B.L.10
Chiu, R.11
Coutinho, P.M.12
Feau, N.13
Field, M.14
Frey, P.15
Gelhaye, E.16
Goldberg, J.17
Grabherr, M.G.18
Kodira, C.D.19
Kohler, A.20
Kues, U.21
Lindquist, E.A.22
Lucas, S.M.23
Mago, R.24
Mauceli, E.25
Morin, E.26
Murat, C.27
Pangilinan, J.L.28
Park, R.29
more..
-
19
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:1133
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 1133
-
-
Edgar, R.C.1
-
20
-
-
84860513986
-
PILER: Identification and classification of genomic repeats
-
Edgar RC, Myers EW (2005) PILER: Identification and classification of genomic repeats. Bioinformatics 21(Suppl 1):i152-i1588
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL1
-
-
Edgar, R.C.1
Myers, E.W.2
-
22
-
-
39749179047
-
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
-
Ellinghaus D, Kurtz S, Willhoeft U (2008) LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9:188
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 188
-
-
Ellinghaus, D.1
Kurtz, S.2
Willhoeft, U.3
-
23
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
Feschotte C (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9:397-4055
-
(2008)
Nat Rev Genet
, vol.9
, pp. 397-405
-
-
Feschotte, C.1
-
24
-
-
71749089142
-
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes
-
Feschotte C, Keswani U, Ranganathan N, Guibotsy ML, Levine D (2009) Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes. Genome Biol Evol 2009:205-2200
-
(2009)
Genome Biol Evol
, vol.2009
, pp. 205-220
-
-
Feschotte, C.1
Keswani, U.2
Ranganathan, N.3
Guibotsy, M.L.4
Levine, D.5
-
25
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A (2010) The Pfam protein families database. Nucleic Acids Res 38:D211-D2222
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
26
-
-
0024505998
-
Eukaryotic transposable elements and genome evolution
-
Finnegan DJ (1989) Eukaryotic transposable elements and genome evolution. Trends Genet 5:103-1077
-
(1989)
Trends Genet
, vol.5
, pp. 103-107
-
-
Finnegan, D.J.1
-
27
-
-
34948898172
-
A model of segmental duplication formation in Drosophila melanogaster
-
Fiston-Lavier AS, Anxolabehere D, Quesneville H (2007) A model of segmental duplication formation in Drosophila melanogaster. Genome Res 17:1458-14700
-
(2007)
Genome Res
, vol.17
, pp. 1458-1470
-
-
Fiston-Lavier, A.S.1
Anxolabehere, D.2
Quesneville, H.3
-
28
-
-
79551624472
-
Considering transposable element diversification in de novo annotation approaches
-
Flutre T, Duprat E, Feuillet C, QuesnevilleH(2011) Considering transposable element diversification in de novo annotation approaches. PLoS One 6:e165266
-
(2011)
PLoS One
, vol.6
-
-
Flutre, T.1
Duprat, E.2
Feuillet, C.3
Quesneville, H.4
-
29
-
-
0034307716
-
It takes two transposons to tango: Transposable-element-mediated chromosomal rearrangements
-
Gray YH (2000) It takes two transposons to tango: Transposable-element- mediated chromosomal rearrangements. Trends Genet 16:461-4688
-
(2000)
Trends Genet
, vol.16
, pp. 461-468
-
-
Gray, Y.H.1
-
30
-
-
46649114729
-
Identification of repeat structure in large genomes using repeat probability clouds
-
Gu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DD (2008) Identification of repeat structure in large genomes using repeat probability clouds. Anal Biochem 380(1):77-833
-
(2008)
Anal Biochem
, vol.380
, Issue.1
, pp. 77-83
-
-
Gu, W.1
Castoe, T.A.2
Hedges, D.J.3
Batzer, M.A.4
Pollock, D.D.5
-
31
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-7044
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
32
-
-
78650432054
-
MITE-Hunter: A program for discovering miniature inverted-repeat transposable elements from genomic sequences
-
Han Y, Wessler SR (2010) MITE-Hunter: A program for discovering miniature inverted-repeat transposable elements from genomic sequences. Nucleic Acids Res 38:e1999
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Han, Y.1
Wessler, S.R.2
-
33
-
-
75649128346
-
A systematic search and classification of T2 family miniature inverted-repeat transposable elements (MITEs) in Xenopus tropicalis suggests the existence of recently active MITE subfamilies
-
Hikosaka A, Kawahara A (2010) A systematic search and classification of T2 family miniature inverted-repeat transposable elements (MITEs) in Xenopus tropicalis suggests the existence of recently active MITE subfamilies. Mol Genet Genomics 283:49-622
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 49-62
-
-
Hikosaka, A.1
Kawahara, A.2
-
34
-
-
0028304908
-
On global sequence alignment
-
Huang X (1994) On global sequence alignment. Comput Appl Biosci 10:227-2355
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 227-235
-
-
Huang, X.1
-
35
-
-
82955195772
-
Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes
-
Janicki M, Rooke R, Yang G (2011) Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome Res 19:787-8088
-
(2011)
Chromosome Res
, vol.19
, pp. 787-808
-
-
Janicki, M.1
Rooke, R.2
Yang, G.3
-
36
-
-
4944239027
-
Pack-MULE transposable elements mediate gene evolution in plants
-
Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR (2004) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431:569-5733
-
(2004)
Nature
, vol.431
, pp. 569-573
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Eddy, S.R.4
Wessler, S.R.5
-
37
-
-
0030094146
-
CENSOR-A program for identification and elimination of repetitive elements from DNA sequences
-
Jurka J, Klonowski P, Dagman V, Pelton P (1996) CENSOR-a program for identification and elimination of repetitive elements from DNA sequences. Comput Chem 20:119-1211
-
(1996)
Comput Chem
, vol.20
, pp. 119-121
-
-
Jurka, J.1
Klonowski, P.2
Dagman, V.3
Pelton, P.4
-
38
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110:462-4677
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
39
-
-
33745726574
-
Efficient algorithms and software for detection of full-length LTR retrotransposons
-
Kalyanaraman A, Aluru S (2006) Efficient algorithms and software for detection of full-length LTR retrotransposons. J Bioinform Comput Biol 4:197-2166
-
(2006)
J Bioinform Comput Biol
, vol.4
, pp. 197-216
-
-
Kalyanaraman, A.1
Aluru, S.2
-
40
-
-
22744445703
-
RAG1 core and V(D J recombination signal sequences were derived from Transib transposons
-
Kapitonov VV, Jurka J (2005) RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol 3:e1811
-
(2005)
PLoS Biol
, vol.3
-
-
Kapitonov, V.V.1
Jurka, J.2
-
41
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059-30666
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
42
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
-
Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7:4744
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 4744
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
43
-
-
0043123037
-
Mreps: Efficient and flexible detection of tandem repeats in DNA
-
Kolpakov R, Bana G, Kucherov G (2003) mreps: Efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res 31:3672-36788
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3672-3678
-
-
Kolpakov, R.1
Bana, G.2
Kucherov, G.3
-
44
-
-
56549086632
-
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
-
Kurtz S, Narechania A, Stein JC, Ware D (2008) A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 9:5177
-
(2008)
BMC Genomics
, vol.9
, pp. 5177
-
-
Kurtz, S.1
Narechania, A.2
Stein, J.C.3
Ware, D.4
-
45
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Chen YJ (2001) Initial sequencing and analysis of the human genome. Nature 409:860-9211
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Chen, Y.J.55
more..
-
47
-
-
0036908761
-
Genome-tools: A flexible package for genome sequence analysis
-
Lee W, Chen SL (2002) Genome-tools: A flexible package for genome sequence analysis. Biotechniques 33:1334-13411
-
(2002)
Biotechniques
, vol.33
, pp. 1334-1341
-
-
Lee, W.1
Chen, S.L.2
-
48
-
-
77952670452
-
Identifying repeats and transposable elements in sequenced genomes: How to find your way through the dense forest of programs
-
Lerat E (2010) Identifying repeats and transposable elements in sequenced genomes: How to find your way through the dense forest of programs. Heredity 104:520-5333
-
(2010)
Heredity
, vol.104
, pp. 520-533
-
-
Lerat, E.1
-
49
-
-
55449118548
-
ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun
-
Li R, Ye J, Li S, Wang J, Han Y, Ye C, Wang J, Yang H, Yu J, Wong GK, Wang J (2005) ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun. PLoS Comput Biol 1:e433
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Li, R.1
Ye, J.2
Li, S.3
Wang, J.4
Han, Y.5
Ye, C.6
Wang, J.7
Yang, H.8
Yu, J.9
Wong, G.K.10
Wang, J.11
-
50
-
-
34547570079
-
RTAnalyzer: A web application for finding new retrotransposons and detecting L1 retrotransposition signatures
-
Lucier JF, Perreault J, Noel JF, Boire G, Perreault JP (2007) RTAnalyzer: A web application for finding new retrotransposons and detecting L1 retrotransposition signatures. Nucleic Acids Res 35:W269-W2744
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Lucier, J.F.1
Perreault, J.2
Noel, J.F.3
Boire, G.4
Perreault, J.P.5
-
51
-
-
40449120632
-
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
-
Martin F, Aerts A, Ahren D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buee M, Brokstein P, Canback B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbe J, Lin YC, Legue V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kues U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouze P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452:88-922
-
(2008)
Nature
, vol.452
, pp. 88-92
-
-
Martin, F.1
Aerts, A.2
Ahren, D.3
Brun, A.4
Danchin, E.G.5
Duchaussoy, F.6
Gibon, J.7
Kohler, A.8
Lindquist, E.9
Pereda, V.10
Salamov, A.11
Shapiro, H.J.12
Wuyts, J.13
Blaudez, D.14
Buee, M.15
Brokstein, P.16
Canback, B.17
Cohen, D.18
Courty, P.E.19
Coutinho, P.M.20
Delaruelle, C.21
Detter, J.C.22
Deveau, A.23
DiFazio, S.24
Duplessis, S.25
Fraissinet-Tachet, L.26
Lucic, E.27
Frey-Klett, P.28
Fourrey, C.29
Feussner, I.30
Gay, G.31
Grimwood, J.32
Hoegger, P.J.33
Jain, P.34
Kilaru, S.35
Labbe, J.36
Lin, Y.C.37
Legue, V.38
Le Tacon, F.39
Marmeisse, R.40
Melayah, D.41
Montanini, B.42
Muratet, M.43
Nehls, U.44
Niculita-Hirzel, H.45
Oudot-Le Secq, M.P.46
Peter, M.47
Quesneville, H.48
Rajashekar, B.49
Reich, M.50
Rouhier, N.51
Schmutz, J.52
Yin, T.53
Chalot, M.54
Henrissat, B.55
Kues, U.56
Lucas, S.57
Van De Peer, Y.58
Podila, G.K.59
Polle, A.60
Pukkila, P.J.61
Richardson, P.M.62
Rouze, P.63
Sanders, I.R.64
Stajich, J.E.65
Tunlid, A.66
Tuskan, G.67
Grigoriev, I.V.68
more..
-
52
-
-
77951144839
-
Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
-
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, Arcioni S, Artiguenave F, Aury JM, Ballario P, Bolchi A, Brenna A, Brun A, Buee M, Cantarel B, Chevalier G, Couloux A, Da Silva C, Denoeud F, Duplessis S, Ghignone S, Hilselberger B, Iotti M, Marcais B, Mello A, Miranda M, Pacioni G, Quesneville H, Riccioni C, Ruotolo R, Splivallo R, Stocchi V, Tisserant E, Viscomi AR, Zambonelli A, Zampieri E, Henrissat B, Lebrun MH, Paolocci F, Bonfante P, Ottonello S, Wincker P (2010) Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464:1033-10388
-
(2010)
Nature
, vol.464
, pp. 1033-1038
-
-
Martin, F.1
Kohler, A.2
Murat, C.3
Balestrini, R.4
Coutinho, P.M.5
Jaillon, O.6
Montanini, B.7
Morin, E.8
Noel, B.9
Percudani, R.10
Porcel, B.11
Rubini, A.12
Amicucci, A.13
Amselem, J.14
Anthouard, V.15
Arcioni, S.16
Artiguenave, F.17
Aury, J.M.18
Ballario, P.19
Bolchi, A.20
Brenna, A.21
Brun, A.22
Buee, M.23
Cantarel, B.24
Chevalier, G.25
Couloux, A.26
Da Silva, C.27
Denoeud, F.28
Duplessis, S.29
Ghignone, S.30
Hilselberger, B.31
Iotti, M.32
Marcais, B.33
Mello, A.34
Miranda, M.35
Pacioni, G.36
Quesneville, H.37
Riccioni, C.38
Ruotolo, R.39
Splivallo, R.40
Stocchi, V.41
Tisserant, E.42
Viscomi, A.R.43
Zambonelli, A.44
Zampieri, E.45
Henrissat, B.46
Lebrun, M.H.47
Paolocci, F.48
Bonfante, P.49
Ottonello, S.50
Wincker, P.51
more..
-
53
-
-
0037433054
-
LTR-STRUC: A novel search and identification program for LTR retrotransposons
-
McCarthy EM, McDonald JF (2003) LTR-STRUC: A novel search and identification program for LTR retrotransposons. Bioinformatics 19:362-3677
-
(2003)
Bioinformatics
, vol.19
, pp. 362-367
-
-
McCarthy, E.M.1
McDonald, J.F.2
-
54
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A (2005a) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37:997-10022
-
(2005)
Nat Genet
, vol.37
, pp. 997-10022
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
56
-
-
34250902354
-
Genome sequence of Aedes aegypti, a major arbovirus vector
-
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG, Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J, Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H, Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS, Kennedy RC, Koo H, Kravitz S, Kriventseva EV (2007) Genome sequence of Aedes aegypti, a major arbovirus vector. Science 316:1718-17233
-
(2007)
Science
, vol.316
, pp. 1718-1723
-
-
Nene, V.1
Wortman, J.R.2
Lawson, D.3
Haas, B.4
Kodira, C.5
Tu, Z.J.6
Loftus, B.7
Xi, Z.8
Megy, K.9
Grabherr, M.10
Ren, Q.11
Zdobnov, E.M.12
Lobo, N.F.13
Campbell, K.S.14
Brown, S.E.15
Bonaldo, M.F.16
Zhu, J.17
Sinkins, S.P.18
Hogenkamp, D.G.19
Amedeo, P.20
Arensburger, P.21
Atkinson, P.W.22
Bidwell, S.23
Biedler, J.24
Birney, E.25
Bruggner, R.V.26
Costas, J.27
Coy, M.R.28
Crabtree, J.29
Crawford, M.30
Debruyn, B.31
Decaprio, D.32
Eiglmeier, K.33
Eisenstadt, E.34
El-Dorry, H.35
Gelbart, W.M.36
Gomes, S.L.37
Hammond, M.38
Hannick, L.I.39
Hogan, J.R.40
Holmes, M.H.41
Jaffe, D.42
Johnston, J.S.43
Kennedy, R.C.44
Koo, H.45
Kravitz, S.46
Kriventseva, E.V.47
more..
-
57
-
-
0018857680
-
Selfish DNA: The ultimate parasite
-
Orgel LE, Crick FH (1980) Selfish DNA: The ultimate parasite. Nature 284:604-6077
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
58
-
-
28744453801
-
Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome
-
Pereira V (2004) Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome. Genome Biol 5:R799
-
(2004)
Genome Biol
, vol.5
-
-
Pereira, V.1
-
59
-
-
59949092694
-
Automated paleontology of repetitive DNA with Reannotate
-
Pereira V (2008) Automated paleontology of repetitive DNA with REANNOTATE. BMC Genomics 9:6144
-
(2008)
BMC Genomics
, vol.9
, pp. 6144
-
-
Pereira, V.1
-
60
-
-
0035058360
-
Evolution of genome size: New approaches to an old problem
-
Petrov DA (2001) Evolution of genome size: New approaches to an old problem. Trends Genet 17:23-288
-
(2001)
Trends Genet
, vol.17
, pp. 23-28
-
-
Petrov, D.A.1
-
61
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
Piegu B, Guyot R, Picault N, Roulin A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O (2006) Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16:1262-12699
-
(2006)
Genome Res
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
Panaud, O.11
-
62
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price AL, Jones NC, Pevzner PA (2005) De novo identification of repeat families in large genomes. Bioinformatics 21(Suppl 1):i351-i3588
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL1
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
63
-
-
0346120025
-
Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes
-
Quesneville H, Nouaud D, Anxolabehere D (2003) Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. J Mol Evol 57(Suppl 1): S50-S599
-
(2003)
J Mol Evol
, vol.57
, Issue.SUPPL1
-
-
Quesneville, H.1
Nouaud, D.2
Anxolabehere, D.3
-
64
-
-
28844444029
-
Combined evidence annotation of transposable elements in genome sequences
-
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D (2005) Combined evidence annotation of transposable elements in genome sequences. PLoS Comput Biol 1:166-1755
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 166-175
-
-
Quesneville, H.1
Bergman, C.M.2
Andrieu, O.3
Autard, D.4
Nouaud, D.5
Ashburner, M.6
Anxolabehere, D.7
-
66
-
-
75649096724
-
MGEScan-non-LTR: Computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes
-
Rho M, Tang H (2009) MGEScan-non-LTR: Computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes. Nucleic Acids Res 37:e1433
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Rho, M.1
Tang, H.2
-
67
-
-
34247877564
-
De novo identification of LTR retrotransposons in eukaryotic genomes
-
Rho M, Choi JH, Kim S, Lynch M, Tang H (2007) De novo identification of LTR retrotransposons in eukaryotic genomes. BMC Genomics 8:900
-
(2007)
BMC Genomics
, vol.8
, pp. 900
-
-
Rho, M.1
Choi, J.H.2
Kim, S.3
Lynch, M.4
Tang, H.5
-
68
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations
-
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, Stachowiak A, Turgeon BG, Tyler BM, Vincent D, Weissenbach J, Amselem J, Quesneville H, Oliver RP, Wincker P, Balesdent MH, Howlett BJ (2011) Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations. Nat Commun 2:2022
-
(2011)
Nat Commun
, vol.2
, pp. 2022
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
Hoede, C.4
Van De Wouw, A.P.5
Couloux, A.6
Dominguez, V.7
Anthouard, V.8
Bally, P.9
Bourras, S.10
Cozijnsen, A.J.11
Ciuffetti, L.M.12
Degrave, A.13
Dilmaghani, A.14
Duret, L.15
Fudal, I.16
Goodwin, S.B.17
Gout, L.18
Glaser, N.19
Linglin, J.20
Kema, G.H.21
Lapalu, N.22
Lawrence, C.B.23
May, K.24
Meyer, M.25
Ollivier, B.26
Poulain, J.27
Schoch, C.L.28
Simon, A.29
Spatafora, J.W.30
Stachowiak, A.31
Turgeon, B.G.32
Tyler, B.M.33
Vincent, D.34
Weissenbach, J.35
Amselem, J.36
Quesneville, H.37
Oliver, R.P.38
Wincker, P.39
Balesdent, M.H.40
Howlett, B.J.41
more..
-
69
-
-
35948981635
-
Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
-
Santangelo AM, de Souza FS, Franchini LF, Bumaschny VF, Low MJ, Rubinstein M (2007) Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. PLoS Genet 3:1813-18266
-
(2007)
PLoS Genet
, vol.3
, pp. 1813-1826
-
-
Santangelo, A.M.1
De Souza, F.S.2
Franchini, L.F.3
Bumaschny, V.F.4
Low, M.J.5
Rubinstein, M.6
-
70
-
-
0036900064
-
Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana
-
Santiago N, Herraiz C, Goni JR, Messeguer X, Casacuberta JM (2002) Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana. Mol Biol Evol 19:2285-22933
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2285-2293
-
-
Santiago, N.1
Herraiz, C.2
Goni, J.R.3
Messeguer, X.4
Casacuberta, J.M.5
-
71
-
-
70450202132
-
The B733 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D (2009) The B733 maize genome: Complexity, diversity, and dynamics. Science 326:1112-11155
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
Chen, W.31
Yan, L.32
Higginbotham, J.33
Cardenas, M.34
Waligorski, J.35
Applebaum, E.36
Phelps, L.37
Falcone, J.38
Kanchi, K.39
Thane, T.40
Scimone, A.41
Thane, N.42
Henke, J.43
Wang, T.44
Ruppert, J.45
Shah, N.46
Rotter, K.47
Hodges, J.48
Ingenthron, E.49
Cordes, M.50
Kohlberg, S.51
Sgro, J.52
Delgado, B.53
Mead, K.54
Chinwalla, A.55
Leonard, S.56
Crouse, K.57
Collura, K.58
Kudrna, D.59
more..
-
73
-
-
78650122420
-
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
-
Smit AFA, Hubley R, Green P (1996-2004) RepeatMasker open-3.0. Institute for Systems Biology Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stuber K, Loren V, van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D (2010) Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330:1543-15466
-
(2010)
Science
, vol.330
, pp. 1543-1546
-
-
Spanu, P.D.1
Abbott, J.C.2
Amselem, J.3
Burgis, T.A.4
Soanes, D.M.5
Stuber, K.6
Loren, V.7
Van Themaat, E.8
Brown, J.K.9
Butcher, S.A.10
Gurr, S.J.11
Lebrun, M.H.12
Ridout, C.J.13
Schulze-Lefert, P.14
Talbot, N.J.15
Ahmadinejad, N.16
Ametz, C.17
Barton, G.R.18
Benjdia, M.19
Bidzinski, P.20
Bindschedler, L.V.21
Both, M.22
Brewer, M.T.23
Cadle-Davidson, L.24
Cadle-Davidson, M.M.25
Collemare, J.26
Cramer, R.27
Frenkel, O.28
Godfrey, D.29
more..
-
74
-
-
75349090212
-
Fine-grained annotation and classification of de novo predicted LTR retrotransposons
-
Steinbiss S, Willhoeft U, Gremme G, Kurtz S (2009) Fine-grained annotation and classification of de novo predicted LTR retrotransposons. Nucleic Acids Res 37:7002-70133
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7002-7013
-
-
Steinbiss, S.1
Willhoeft, U.2
Gremme, G.3
Kurtz, S.4
-
75
-
-
0003308786
-
Molecular archeology of L1 insertions in the human genome
-
Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD (2002) Molecular archeology of L1 insertions in the human genome. Genome Biol 3:research00522
-
(2002)
Genome Biol 3:research00522
-
-
Szak, S.T.1
Pickeral, O.K.2
Makalowski, W.3
Boguski, M.S.4
Landsman, D.5
Boeke, J.D.6
-
76
-
-
0035852717
-
Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae
-
Tu Z (2001) Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae. Proc Natl Acad Sci USA 98:1699-17044
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1699-1704
-
-
Tu, Z.1
-
77
-
-
11244303622
-
The changing tails of a novel short interspersed element in Aedes aegypti: Genomic evidence for slippage retrotransposition and the relationship between 3' tandem repeats and the poly(dA) tail
-
Tu Z, Li S, Mao C (2004) The changing tails of a novel short interspersed element in Aedes aegypti: Genomic evidence for slippage retrotransposition and the relationship between 3' tandem repeats and the poly(dA) tail. Genetics 168:2037-20477
-
(2004)
Genetics
, vol.168
, pp. 2037-2047
-
-
Tu, Z.1
Li, S.2
Mao, C.3
-
78
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, Sabot F,Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, FlavellA, Leroy P,Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH (2007) A unified classification system for eukaryotic transposable elements. Nat Rev Genet 8:973-9822
-
(2007)
Nat Rev Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
SanMiguel, P.12
Schulman, A.H.13
-
79
-
-
34547592867
-
LTR-FINDER: An efficient tool for the prediction of full-length LTR retrotransposons
-
Web Server issue
-
Xu Z, Wang H (2007) LTR-FINDER: An efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res 35(Web Server issue):W265-W2688
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Xu, Z.1
Wang, H.2
-
80
-
-
69149101693
-
Structure-based discovery and description of plant and animal Helitrons
-
Yang L, Bennetzen JL (2009) Structure-based discovery and description of plant and animal Helitrons. Proc Natl Acad Sci USA 106:12832-128377
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12832-12837
-
-
Yang, L.1
Bennetzen, J.L.2
-
81
-
-
0043123038
-
MAK, a computational tool kit for automated MITE analysis
-
Yang G, Hall TC (2003) MAK, a computational tool kit for automated MITE analysis. Nucleic Acids Res 31:3659-36655
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3659-3665
-
-
Yang, G.1
Hall, T.C.2
-
82
-
-
11144245992
-
Transposition of hAT elements links transposable elements and V(D)J recombination
-
Zhou L, Mitra R, Atkinson PW, Hickman AB, Dyda F, Craig NL (2004) Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 432:995-10011
-
(2004)
Nature
, vol.432
, pp. 995-10011
-
-
Zhou, L.1
Mitra, R.2
Atkinson, P.W.3
Hickman, A.B.4
Dyda, F.5
Craig, N.L.6
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