-
1
-
-
0028685376
-
The Repeat Pattern Toolkit (RPT): Analyzing the structure and evolution of the C.elegans genome
-
AAAI Press, Stanford, CA
-
Agarwal,P. and States,D.J. (1994) The Repeat Pattern Toolkit (RPT): analyzing the structure and evolution of the C.elegans genome. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology (ISMB-94), AAAI Press, Stanford, CA, pp. 1-9.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology (ISMB-94)
, pp. 1-9
-
-
Agarwal, P.1
States, D.J.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0036673472
-
Automated de novo identification of repeat sequence families in sequenced genomes
-
Bao,Z. and Eddy,S.R. (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res., 12, 1269-1276.
-
(2002)
Genome Res.
, vol.12
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
4
-
-
22244485402
-
Orthologous repeats and mammalian phylogenetic inference
-
(To appear)
-
Bashir,A., Ye,C., Price,A.L. and Bafna,V. (2005) Orthologous repeats and mammalian phylogenetic inference. Genome Res. (To appear)
-
(2005)
Genome Res.
-
-
Bashir, A.1
Ye, C.2
Price, A.L.3
Bafna, V.4
-
5
-
-
0033555906
-
Tandem repeats finder-a program to analyze DNA sequences
-
Benson,G. (1999) Tandem repeats finder-a program to analyze DNA sequences. Nucleic Acids Res., 27, 573-580.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
6
-
-
1842768393
-
Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes
-
Bourque,G., Pevzner,P.A. and Tesler,G. (2004) Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes. Genome Res., 14, 507-516.
-
(2004)
Genome Res.
, vol.14
, pp. 507-516
-
-
Bourque, G.1
Pevzner, P.A.2
Tesler, G.3
-
8
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M., Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C., Burch,P.E. et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 428, 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
Scherer, S.6
Scott, G.7
Steffen, D.8
Worley, K.C.9
Burch, P.E.10
-
9
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Consortium
-
International Human Genome Consortium. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
10
-
-
0032103760
-
Repeats in genomic DNA: Mining and meaning
-
Jurka,J. (1998) Repeats in genomic DNA: Mining and meaning. Curr. Opin. Struct. Biol., 8, 333-337.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 333-337
-
-
Jurka, J.1
-
11
-
-
0034284437
-
Repbase Update: A database and an electronic journal of repetitive elements
-
Jurka,J. (2000) Repbase Update: A database and an electronic journal of repetitive elements. Trends Genet., 9, 418-420.
-
(2000)
Trends Genet.
, vol.9
, pp. 418-420
-
-
Jurka, J.1
-
12
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian,H.H.,Jr (2004) Mobile elements: Drivers of genome evolution. Science, 303, 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
13
-
-
0033066718
-
REPuter: Fast computation of maximal repeats in complete genomes
-
Kurtz,S. and Schleiermacher,C. (1999) REPuter: Fast computation of maximal repeats in complete genomes, Bioinformatics, 15, 426-427.
-
(1999)
Bioinformatics
, vol.15
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
14
-
-
0034565346
-
Computation and visualization of degenerate repeats in complete genomes
-
AAAI Press, San Diego, CA
-
Kurtz,S., Ohlebusch,E., Schleiermacher,C., Stoye,J. and Giegerich,R. (2000) Computation and visualization of degenerate repeats in complete genomes. In Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology (ISMB-00), AAAI Press, San Diego, CA, pp. 269-278.
-
(2000)
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology (ISMB-00)
, pp. 269-278
-
-
Kurtz, S.1
Ohlebusch, E.2
Schleiermacher, C.3
Stoye, J.4
Giegerich, R.5
-
15
-
-
0032654634
-
Finding similar regions in many strings
-
Atlanta, Georgia
-
Li,M., Ma,B. and Wang,L. (1999) Finding similar regions in many strings. In Proceedings of the 31st ACM Annual Symposium on Theory of Computing. Atlanta, Georgia, pp. 473-482.
-
(1999)
Proceedings of the 31st ACM Annual Symposium on Theory of Computing
, pp. 473-482
-
-
Li, M.1
Ma, B.2
Wang, L.3
-
16
-
-
0026845596
-
A Four Russians algorithm for regular expression pattern matching
-
Myers,E.W. (1992)A Four Russians algorithm for regular expression pattern matching. J. ACM, 39, 430-448.
-
(1992)
J. ACM
, vol.39
, pp. 430-448
-
-
Myers, E.W.1
-
17
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
Pevzner,P.A., Tang,H. and Waterman,M.S. (2001) An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci. USA, 98, 9748-9753.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
Tang, H.2
Waterman, M.S.3
-
18
-
-
4644275238
-
De novo repeat classification and fragment assembly
-
Pevzner,P.A., Tang,H. and Tesler,G. (2004) De novo repeat classification and fragment assembly. Genome Res., 14, 1786-1796.
-
(2004)
Genome Res.
, vol.14
, pp. 1786-1796
-
-
Pevzner, P.A.1
Tang, H.2
Tesler, G.3
-
19
-
-
8744242187
-
Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
-
Price,A.L., Eskin,E. and Pevzner,P.A. (2004) Whole-genome analysis of Alu repeat elements reveals complex evolutionary history. Genome Res., 14, 2245-2252.
-
(2004)
Genome Res.
, vol.14
, pp. 2245-2252
-
-
Price, A.L.1
Eskin, E.2
Pevzner, P.A.3
-
20
-
-
8744312854
-
A novel method for multiple alignment of sequences with repeated and shuffled elements
-
Raphael,B., Zhi,D., Tang,H. and Pevzner,P.A. (2004) A novel method for multiple alignment of sequences with repeated and shuffled elements. Genome Res., 14, 2336-2346.
-
(2004)
Genome Res.
, vol.14
, pp. 2336-2346
-
-
Raphael, B.1
Zhi, D.2
Tang, H.3
Pevzner, P.A.4
-
22
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
23
-
-
4243088097
-
The genome sequence of C.briggsae: A platform for comparative genomics
-
Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al. (2003) The genome sequence of C.briggsae: A platform for comparative genomics. PLoS Biol., 1, E45.
-
(2003)
PLoS Biol.
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
24
-
-
0035230042
-
A clustering method for repeat analysis in DNA sequences
-
RESEARCH0027
-
Volfovsky,N., Haas,B.J. and Salzberg,S.L. (2001) A clustering method for repeat analysis in DNA sequences. Genome Biol., 2, RESEARCH0027.
-
(2001)
Genome Biol.
, vol.2
-
-
Volfovsky, N.1
Haas, B.J.2
Salzberg, S.L.3
-
26
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wooton,J.C. and Federhen,S. (1993) Statistics of local complexity in amino acid sequences and sequence databases. Computers and Chemistry, 17, 149-163.
-
(1993)
Computers and Chemistry
, vol.17
, pp. 149-163
-
-
Wooton, J.C.1
Federhen, S.2
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