Identification of repeat structure in large genomes using repeat probability clouds

Analytical Biochemistry

Volumn 380, Issue 1, 2008, Pages 77-83

  Gu, Wanjun ^a   Castoe, Todd A ^a   Hedges, Dale J ^b   Batzer, Mark A ^c   Pollock, David D ^a  

^a UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^b TULANE UNIVERSITY   (United States)

^c Center for BioModular Multi Scale Systems   (United States)

Author keywords

Alignment; Complete genome annotation; Oligonucleotide counts; P clouds; Repeat structure

Indexed keywords

ALIGNMENT; GENES;

CLOUD DENSITY; COMPLETE GENOMES; EUKARYOTIC GENOME; LARGE AMOUNTS; NEW APPROACHES; SEQUENCE ALIGNMENTS; SIMILARITY SEARCH; SLIDING WINDOW;

OLIGONUCLEOTIDES;

ALGORITHM; ANALYTIC METHOD; ARTICLE; CALCULATION; DENSITY; GENE MAPPING; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; REPEAT PROBABILITY CLOUD;

EUKARYOTA;

EID: 46649114729     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2008.05.015     Document Type: Article

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