-
1
-
-
84857216671
-
The mutational profile of the yeast genome is shaped by replication
-
Agier N, Fischer G. 2012. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol 29: 905-913.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 905-913
-
-
Agier, N.1
Fischer, G.2
-
2
-
-
0036135617
-
Replication initiation patterns in the b-globin loci of totipotent and differentiated murine cells: Evidence for multiple initiation regions
-
Aladjem MI, Rodewald LW, Lin CM, Bowman S, Cim-bora DM, Brody LL, Epner EM, Groudine M, Wahl GM. 2002. Replication initiation patterns in the b-globin loci of totipotent and differentiated murine cells: Evidence for multiple initiation regions. Mol Cell Biol 22: 442-452.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 442-452
-
-
Aladjem, M.I.1
Rodewald, L.W.2
Lin, C.M.3
Bowman, S.4
Cim-Bora, D.M.5
Brody, L.L.6
Epner, E.M.7
Groudine, M.8
Wahl, G.M.9
-
3
-
-
34548789595
-
Replication in hy-droxyurea: It's a matter of time
-
Alvino GM, Collingwood D, Murphy JM, Delrow J, Brewer BJ, Raghuraman MK. 2007. Replication in hy-droxyurea: It's a matter of time. Mol Cell Biol 27: 6396- 6406.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6396-6406
-
-
Alvino, G.M.1
Collingwood, D.2
Murphy, J.M.3
Delrow, J.4
Brewer, B.J.5
Raghuraman, M.K.6
-
4
-
-
0042743766
-
Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing
-
Anglana M, Apiou F, Bensimon A, Debatisse M. 2003. Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing. Cell 114: 385-394.
-
(2003)
Cell
, vol.114
, pp. 385-394
-
-
Anglana, M.1
Apiou, F.2
Bensimon, A.3
Debatisse, M.4
-
5
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomy-ces cerevisiae
-
Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM. 2004. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomy-ces cerevisiae. Mol Cell Biol 24: 4769-4780.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
6
-
-
77951183112
-
Measurement of replication structures at the nanometer scale using super-resolution light microscopy
-
Baddeley D, Chagin VO, Schermelleh L, Martin S, Pombo A, Carlton PM, Gahl A, Domaing P, Birk U, Leonhardt H, et al. 2010. Measurement of replication structures at the nanometer scale using super-resolution light microscopy. Nucleic Acids Res 38: e8.
-
(2010)
Nucleic Acids Res
, vol.8
, pp. 38
-
-
Baddeley, D.1
Chagin, V.O.2
Schermelleh, L.3
Martin, S.4
Pombo, A.5
Carlton, P.M.6
Gahl, A.7
Domaing, P.8
Birk, U.9
Leonhardt, H.10
-
7
-
-
77954386433
-
Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetyla-tion and replication timing
-
Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, Schubeler D. 2010. Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetyla-tion and replication timing. Nat Struct Mol Biol 17: 894-900.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 894-900
-
-
Bell, O.1
Schwaiger, M.2
Oakeley, E.J.3
Lienert, F.4
Beisel, C.5
Stadler, M.B.6
Schubeler, D.7
-
8
-
-
0034008103
-
Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci
-
Berezney R, Dubey DD, Huberman JA. 2000. Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci. Chromosoma 108: 471-484.
-
(2000)
Chromosoma
, vol.108
, pp. 471-484
-
-
Berezney, R.1
Dubey, D.D.2
Huberman, J.A.3
-
9
-
-
33847791924
-
CTCF regulates asynchronous replication of the imprinted H19/Igf2 domain
-
Bergstrom R, Whitehead J, Kurukuti S, Ohlsson R. 2007. CTCF regulates asynchronous replication of the imprinted H19/Igf2 domain. Cell Cycle 6: 450-454.
-
(2007)
Cell Cycle
, vol.6
, pp. 450-454
-
-
Bergstrom, R.1
Whitehead, J.2
Kurukuti, S.3
Ohlsson, R.4
-
10
-
-
84864690009
-
Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
-
Besnard E, Babled A, Lapasset L, Milhavet O, Parrinello H, Dantec C, Marin JM, Lemaitre JM. 2012. Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs. Nat Struct Mol Biol 19: 837-844.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 837-844
-
-
Besnard, E.1
Babled, A.2
Lapasset, L.3
Milhavet, O.4
Parrinello, H.5
Dantec, C.6
Marin, J.M.7
Lemaitre, J.M.8
-
11
-
-
79961170861
-
How dormant origins promote complete genome replication
-
Blow JJ, Ge XQ, Jackson DA. 2011. How dormant origins promote complete genome replication. Trends Biochem Sci 36: 405-414.
-
(2011)
Trends Biochem Sci
, vol.36
, pp. 405-414
-
-
Blow, J.J.1
Ge, X.Q.2
Jackson, D.A.3
-
13
-
-
57349149434
-
Genome-wide studies highlight indirect links between human replication origins and gene regulation
-
Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN. 2008. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci 105: 15837-15842.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 15837-15842
-
-
Cadoret, J.C.1
Meisch, F.2
Hassan-Zadeh, V.3
Luyten, I.4
Guillet, C.5
Duret, L.6
Quesneville, H.7
Prioleau, M.N.8
-
14
-
-
80054681626
-
Histone hypoacetylation is required to maintain late replication timing of constitutive hetero-chromatin
-
Casas-Delucchi CS, van Bemmel JG, Haase S, Herce HD, Nowak D, Meilinger D, Stear JH, Leonhardt H, Cardoso MC. 2012. Histone hypoacetylation is required to maintain late replication timing of constitutive hetero-chromatin. Nucleic Acids Res 40: 159-169.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 159-169
-
-
Casas-Delucchi, C.S.1
van Bemmel, J.G.2
Haase, S.3
Herce, H.D.4
Nowak, D.5
Meilinger, D.6
Stear, J.H.7
Leonhardt, H.8
Cardoso, M.C.9
-
15
-
-
80052523848
-
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou C, Coulombe P, Vigneron A, Stanojcic S, Ganier O, Peiffer I, Rivals E, Puy A, Laurent-Chabalier S, Desprat R, et al. 2011. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res 21: 1438-1449.
-
(2011)
Genome Res
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
Coulombe, P.2
Vigneron, A.3
Stanojcic, S.4
Ganier, O.5
Peiffer, I.6
Rivals, E.7
Puy, A.8
Laurent-Chabalier, S.9
Desprat, R.10
-
16
-
-
77950661675
-
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
-
Chen CL, Rappailles A, Duquenne L, Huvet M, Guilbaud G, Farinelli L, Audit B, d'Aubenton-Carafa Y, Arneodo A, Hyrien O, et al. 2010. Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Genome Res 20: 447-457.
-
(2010)
Genome Res
, vol.20
, pp. 447-457
-
-
Chen, C.L.1
Rappailles, A.2
Duquenne, L.3
Huvet, M.4
Guilbaud, G.5
Farinelli, L.6
Audit, B.7
D'Aubenton-Carafa, Y.8
Arneodo, A.9
Hyrien, O.10
-
17
-
-
84866412836
-
Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells
-
Cornacchia D, Dileep V, Quivy JP, Foti R, Tili F, Santarella-Mellwig R, Anthony C, Almouzni G, Gilbert DM, Buo-nomo SB. 2012. Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells. EMBO J 31: 3678-3690.
-
(2012)
EMBO J
, vol.31
, pp. 3678-3690
-
-
Cornacchia, D.1
Dileep, V.2
Quivy, J.P.3
Foti, R.4
Tili, F.5
Santarella-Mellwig, R.6
Anthony, C.7
Almouzni, G.8
Gilbert, D.M.9
Buo-Nomo, S.B.10
-
18
-
-
65549134856
-
The evolution of isochore patterns in vertebrate genomes
-
Costantini M, Cammarano R, Bernardi G. 2009. The evolution of isochore patterns in vertebrate genomes. BMC Genomics 10: 146.
-
(2009)
BMC Genomics
, vol.10
, pp. 146
-
-
Costantini, M.1
Cammarano, R.2
Bernardi, G.3
-
19
-
-
0037245862
-
An ATR- and Cdc7-dependent DNA damage checkpoint that inhibits initiation of DNA replication
-
Costanzo V, Shechter D, Lupardus PJ, Cimprich KA, Gottes-man M, Gautier J. 2003. An ATR- and Cdc7-dependent DNA damage checkpoint that inhibits initiation of DNA replication. Mol Cell 11: 203-213.
-
(2003)
Mol Cell
, vol.11
, pp. 203-213
-
-
Costanzo, V.1
Shechter, D.2
Lupardus, P.J.3
Cimprich, K.A.4
Gottes-Man, M.5
Gautier, J.6
-
20
-
-
52949092763
-
Replication fork movement sets chromatin loop size and origin choice in mammalian cells
-
Courbet S, Gay S, Arnoult N, Wronka G, Anglana M, Brison O, Debatisse M. 2008. Replication fork movement sets chromatin loop size and origin choice in mammalian cells. Nature 455: 557-560.
-
(2008)
Nature
, vol.455
, pp. 557-560
-
-
Courbet, S.1
Gay, S.2
Arnoult, N.3
Wronka, G.4
Anglana, M.5
Brison, O.6
Debatisse, M.7
-
21
-
-
78549290265
-
Analysis ofreplication profiles reveals key role of RFC-Ctf18 in yeast replication stress response
-
Crabbe L, Thomas A, Pantesco V, De Vos J, Pasero P, LengronneA.2010. Analysis ofreplication profiles reveals key role of RFC-Ctf18 in yeast replication stress response. Nat Struct Mol Biol 17: 1391-1397.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1391-1397
-
-
Crabbe, L.1
Thomas, A.2
Pantesco, V.3
de Vos, J.4
Pasero, P.5
-
22
-
-
77950346675
-
Analysis of replication factories in human cells by super-resolution light microscopy
-
Cseresnyes Z, Schwarz U, Green CM. 2009. Analysis of replication factories in human cells by super-resolution light microscopy. BMC Cell Biol 10: 88.
-
(2009)
BMC Cell Biol
, vol.10
, pp. 88
-
-
Cseresnyes, Z.1
Schwarz, U.2
Green, C.M.3
-
23
-
-
36348988518
-
DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI
-
Czajkowsky DM, Liu J, Hamlin JL, Shao Z. 2008. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. J Mol Biol 375: 12-19.
-
(2008)
J Mol Biol
, vol.375
, pp. 12-19
-
-
Czajkowsky, D.M.1
Liu, J.2
Hamlin, J.L.3
Shao, Z.4
-
24
-
-
84655167711
-
Common fragile sites: Mechanisms of instability revisited
-
Debatisse M, Le Tallec B,Letessier A, Dutrillaux B, Brison O. 2012. Common fragile sites: Mechanisms of instability revisited. Trends Genet 28: 22-32.
-
(2012)
Trends Genet
, vol.28
, pp. 22-32
-
-
Debatisse, M.1
Le, T.B.2
Letessier, A.3
Dutrillaux, B.4
Brison, O.5
-
25
-
-
84864453016
-
Regulation of DNA replication within the immunoglob-ulin heavy-chain locus during B cell commitment
-
Demczuk A, Gauthier MG, Veras I, Kosiyatrakul S, Schild-kraut CL, Busslinger M, Bechhoefer J, Norio P. 2012. Regulation of DNA replication within the immunoglob-ulin heavy-chain locus during B cell commitment. PLoS Biol 10: 1001-1360.
-
(2012)
PLoS Biol
, vol.10
, pp. 1001-1360
-
-
Demczuk, A.1
Gauthier, M.G.2
Veras, I.3
Kosiyatrakul, S.4
Schild-Kraut, C.L.5
Busslinger, M.6
Bechhoefer, J.7
Norio, P.8
-
27
-
-
73249147619
-
Predictable dynamic program of timing of DNA replication in human cells
-
Desprat R, Thierry-Mieg D, Lailler N, Lajugie J, Schild-kraut C, Thierry-Mieg JBouhassiraEE. Predictable dynamic program of timing of DNA replication in human cells Genome Res 19: 2288-2299.
-
Genome Res
, vol.19
, pp. 2288-2299
-
-
Desprat, R.1
Thierry-Mieg, D.2
Lailler, N.3
Lajugie, J.4
Schild-Kraut, C.5
Thierry-Mieg, J.6
-
28
-
-
3042738308
-
Self-regulating model for control of replication origin firing in budding yeast
-
Diaz-Martinez L, Clarke DJ. 2003. Self-regulating model for control of replication origin firing in budding yeast. Cell Cycle 2: 576-578.
-
(2003)
Cell Cycle
, vol.2
, pp. 576-578
-
-
Diaz-Martinez, L.1
Clarke, D.J.2
-
29
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova DS, Gilbert DM. 1999. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol Cell 4: 983-993.
-
(1999)
Mol Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
30
-
-
84867185642
-
Maintaining replication origins in the face of genomic change
-
Di Rienzi SC, Lindstrom KC, Mann T, Noble WS, Raghu-raman MK, Brewer BJ. 2012. Maintaining replication origins in the face of genomic change. Genome Res 22: 1940-1952.
-
(2012)
Genome Res
, vol.22
, pp. 1940-1952
-
-
Di, R.S.C.1
Lindstrom, K.C.2
Mann, T.3
Noble, W.S.4
Raghu-Raman, M.K.5
Brewer, B.J.6
-
31
-
-
70350511281
-
Temporal order of DNA replication
-
ed. DePamphilis ML, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Donaldson AD, Schildkraut CL. 2006. Temporal order of DNA replication. In DNA replication and human disease (ed. DePamphilis ML), pp. 197-216. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2006)
DNA Replication and Human Disease
, pp. 197-216
-
-
Donaldson, A.D.1
Schildkraut, C.L.2
-
32
-
-
0032134456
-
CLB5-dependent activation of late replication origins in S. cerevisiae
-
Donaldson AD, Raghuraman MK, Friedman KL, Cross FR, Brewer BJ, Fangman WL. 1998. CLB5-dependent activation of late replication origins in S. cerevisiae. Mol Cell 2: 173-182.
-
(1998)
Mol Cell
, vol.2
, pp. 173-182
-
-
Donaldson, A.D.1
Raghuraman, M.K.2
Friedman, K.L.3
Cross, F.R.4
Brewer, B.J.5
Fangman, W.L.6
-
33
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, Lee C, Shendure J, Fields S, Blau CA, Noble WS. 2010. A three-dimensional model of the yeast genome. Nature 465: 363-367.
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
Lee, C.6
Shendure, J.7
Fields, S.8
Blau, C.A.9
Noble, W.S.10
-
34
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, Macalpine DM. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24: 748-753.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
Macalpine, D.M.5
-
35
-
-
79551581102
-
Chromatin signatures of the Drosophila replication program
-
Eaton ML, Prinz JA, MacAlpine HK, Tretyakov G, Kharchenko PV, MacAlpine DM. 2011. Chromatin signatures of the Drosophila replication program. Genome Res 21: 164-174.
-
(2011)
Genome Res
, vol.21
, pp. 164-174
-
-
Eaton, M.L.1
Prinz, J.A.2
Macalpine, H.K.3
Tretyakov, G.4
Kharchenko, P.V.5
Macalpine, D.M.6
-
36
-
-
39049096818
-
Global profilingof DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. pombe
-
Eshaghi M, Karuturi RK, Li J, Chu Z, Liu ET, Liu J. 2007. Global profilingof DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. pombe. PLoS ONE 2: e722.
-
(2007)
PLoS ONE
, vol.722
, pp. 2
-
-
Eshaghi, M.1
Karuturi, R.K.2
Li, J.3
Chu, Z.4
Liu, E.T.5
Liu, J.6
-
37
-
-
77649231571
-
Genome-wide analysis of the replication program in mammals
-
Farkash-Amar S, Simon I. 2010. Genome-wide analysis of the replication program in mammals. Chromosome Res 18: 115-125.
-
(2010)
Chromosome Res
, vol.18
, pp. 115-125
-
-
Farkash-Amar, S.1
Simon, I.2
-
38
-
-
53549118586
-
Global organization of replication time zones of the mouse genome
-
Farkash-Amar S, Lipson D, Polten A, Goren A, Helm-stetter C, Yakhini Z, Simon I. 2008. Global organization of replication time zones of the mouse genome. Genome Res 18: 1562-1570.
-
(2008)
Genome Res
, vol.18
, pp. 1562-1570
-
-
Farkash-Amar, S.1
Lipson, D.2
Polten, A.3
Goren, A.4
Helm-Stetter, C.5
Yakhini, Z.6
Simon, I.7
-
39
-
-
33645152790
-
Geno-mic mapping of single-stranded DNA in hydroxyureachallenged yeasts identifies origins of replication
-
Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ. 2006. Geno-mic mapping of single-stranded DNA in hydroxyureachallenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-155.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
40
-
-
0026571672
-
A position effect on the time of replication origin activation in yeast
-
Ferguson BM, Fangman WL. 1992. A position effect on the time of replication origin activation in yeast. Cell 68: 333-339.
-
(1992)
Cell
, vol.68
, pp. 333-339
-
-
Ferguson, B.M.1
Fangman, W.L.2
-
41
-
-
0029781449
-
Multiple determinants controlling activation of yeast replication origins late in S phase
-
Friedman KL, FergusonBM NylandSV Brewer BJ Fangman WL. 1996. Multiple determinants controlling activation of yeast replication origins late in S phase. Genes Dev 10: 1595-1607.
-
(1996)
Genes Dev
, vol.10
, pp. 1595-1607
-
-
Friedman, K.L.1
-
42
-
-
0031265756
-
Replication profile of Saccharomyces cerevisiae chromosome VI
-
Friedman KL, Brewer BJ, Fangman WL. 1997. Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells 2: 667-678.
-
(1997)
Genes Cells
, vol.2
, pp. 667-678
-
-
Friedman, K.L.1
Brewer, B.J.2
Fangman, W.L.3
-
43
-
-
70349912086
-
Temporal differences in DNA replication during the S phase using single fiber analysis of normal human fibroblasts and glioblastoma T98G cells
-
Frum RA, Khondker ZS, Kaufman DG. 2009. Temporal differences in DNA replication during the S phase using single fiber analysis of normal human fibroblasts and glioblastoma T98G cells. Cell Cycle 8: 3133-3148.
-
(2009)
Cell Cycle
, vol.8
, pp. 3133-3148
-
-
Frum, R.A.1
Khondker, Z.S.2
Kaufman, D.G.3
-
44
-
-
65549146426
-
Control of DNA replication by anomalous reaction-diffusion kinetics
-
Gauthier MG, Bechhoefer J. 2009. Control of DNA replication by anomalous reaction-diffusion kinetics. Phys Rev Lett 102: 104-158.
-
(2009)
Phys Rev Lett
, vol.102
, pp. 104-158
-
-
Gauthier, M.G.1
Bechhoefer, J.2
-
45
-
-
84857846907
-
Modeling inhomogeneous DNA replication kinetics
-
Gauthier MG, Norio P, Bechhoefer J. 2012. Modeling inhomogeneous DNA replication kinetics. PLoS ONE 7: e32053.
-
(2012)
PLoS ONE
, vol.7
, pp. 320-353
-
-
Gauthier, M.G.1
Norio, P.2
Bechhoefer, J.3
-
46
-
-
0036591890
-
Replication timing and transcriptional control: Beyond cause and effect
-
Gilbert DM. 2002. Replication timing and transcriptional control: Beyond cause and effect. Curr Opin Cell Biol 14: 377-383.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 377-383
-
-
Gilbert, D.M.1
-
47
-
-
54949102567
-
Nuclear structure and DNA replication
-
(ed. DePamphilis ML, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Gilbert DM, Gasser SM. 2006. Nuclear structure and DNA replication. In DNA replication and human disease (ed. DePamphilis ML), pp. 175-196. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2006)
DNA Replication and Human Disease
, pp. 175-196
-
-
Gilbert, D.M.1
Gasser, S.M.2
-
48
-
-
4444258534
-
Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers
-
Gilbert N, Boyle S, Fiegler H, Woodfine K, Carter NP, Bickmore WA. 2004. Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers. Cell 118: 555-566.
-
(2004)
Cell
, vol.118
, pp. 555-566
-
-
Gilbert, N.1
Boyle, S.2
Fiegler, H.3
Woodfine, K.4
Carter, N.P.5
Bickmore, W.A.6
-
49
-
-
51449101224
-
A dynamic stochastic model for DNA replication initiation in early embryos
-
Goldar A, Labit H, Marheineke K, Hyrien O. 2008. A dynamic stochastic model for DNA replication initiation in early embryos. PLoS ONE 3: e2919.
-
(2008)
PLoS ONE
, vol.3
-
-
Goldar, A.1
Labit, H.2
Marheineke, K.3
Hyrien, O.4
-
50
-
-
67651241789
-
Universal temporal profile of replication origin activation in eu-karyotes
-
Goldar A, Marsolier-Kergoat MC, Hyrien O.2009. Universal temporal profile of replication origin activation in eu-karyotes. PLoS ONE 4: e5899.
-
(2009)
PLoS ONE
, vol.4
-
-
Goldar, A.1
Marsolier-Kergoat, M.C.2
Hyrien, O.3
-
51
-
-
44149084708
-
DNA replication timing of the human b-globin domain is controlled by histone modification at the origin
-
Goren A, Tabib A, Hecht M, Cedar H. 2008. DNA replication timing of the human b-globin domain is controlled by histone modification at the origin. Genes Dev 22: 1319-1324.
-
(2008)
Genes Dev
, vol.22
, pp. 1319-1324
-
-
Goren, A.1
Tabib, A.2
Hecht, M.3
Cedar, H.4
-
52
-
-
0013945962
-
The regulation of DNA synthesis and mitosis in multinucleate frog eggs
-
Graham CF. 1966. The regulation of DNA synthesis and mitosis in multinucleate frog eggs. J Cell Sci 1: 363-374.
-
(1966)
J Cell Sci
, vol.1
, pp. 363-374
-
-
Graham, C.F.1
-
53
-
-
74049163810
-
Decreased replication origin activity in temporal transition regions
-
Guan Z, Hughes CM, Kosiyatrakul S, Norio P, Sen R, Fiering S, Allis CD, Bouhassira EE, Schildkraut CL. 2009. Decreased replication origin activity in temporal transition regions. J Cell Biol 187: 623-635.
-
(2009)
J Cell Biol
, vol.187
, pp. 623-635
-
-
Guan, Z.1
Hughes, C.M.2
Kosiyatrakul, S.3
Norio, P.4
Sen, R.5
Fiering, S.6
Allis, C.D.7
Bouhassira, E.E.8
Schildkraut, C.L.9
-
54
-
-
84855272663
-
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
-
Guilbaud G, Rappailles A, Baker A, Chen CL, Arneodo A, Goldar A, d'Aubenton-Carafa Y, Thermes C, Audit B, Hyrien O. 2011. Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome. PLoS Comput Biol 7: e1002322.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. 1002-1322
-
-
Guilbaud, G.1
Rappailles, A.2
Baker, A.3
Chen, C.L.4
Arneodo, A.5
Goldar, A.6
D'Aubenton-Carafa, Y.7
Thermes, C.8
Audit, B.9
Hyrien, O.10
-
55
-
-
76349123622
-
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
-
Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thur-man RE, Weaver M, Dorschner MO, Gartler SM, Stama-toyannopoulos JA. 2010. Sequencing newly replicated DNA reveals widespread plasticity in human replication timing. Proc Natl Acad Sci 107: 139-144.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 139-144
-
-
Hansen, R.S.1
Thomas, S.2
Sandstrom, R.3
Canfield, T.K.4
Thur-Man, R.E.5
Weaver, M.6
Dorschner, M.O.7
Gartler, S.M.8
Stama-Toyannopoulos, J.A.9
-
56
-
-
84858972800
-
USF binding sequences from the HS4 insulator element impose early replication timing on a vertebrate replicator
-
Hassan-Zadeh V, Chilaka S, Cadoret JC, Ma MK, Bog-getto N, West AG, Prioleau MN. 2012. USF binding sequences from the HS4 insulator element impose early replication timing on a vertebrate replicator. PLoS Biol 10: e1001277.
-
(2012)
PLoS Biol
, vol.10
-
-
Hassan-Zadeh, V.1
Chilaka, S.2
Cadoret, J.C.3
Ma, M.K.4
Bog-Getto, N.5
West, A.G.6
Prioleau, M.N.7
-
57
-
-
79958075422
-
Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast
-
Hayano M, Kanoh Y, Matsumoto S, Masai H. 2011. Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast. Mol Cell Biol 31: 2380-2391.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 2380-2391
-
-
Hayano, M.1
Kanoh, Y.2
Matsumoto, S.3
Masai, H.4
-
58
-
-
84856281556
-
Rif1 is a global regulator of timing of replication origin firing in fission yeast
-
Hayano M, Kanoh Y, Matsumoto S, Renard-Guillet C, Shirahige K, Masai H. 2012. Rif1 is a global regulator of timing of replication origin firing in fission yeast. Genes Dev 26: 137-150.
-
(2012)
Genes Dev
, vol.26
, pp. 137-150
-
-
Hayano, M.1
Kanoh, Y.2
Matsumoto, S.3
Renard-Guillet, C.4
Shirahige, K.5
Masai, H.6
-
59
-
-
33947110984
-
Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast
-
Hayashi M, Katou Y, Itoh T, Tazumi A, Yamada Y, Taka-hashi T, Nakagawa T, Shirahige K, Masukata H. 2007. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast. EMBO J 26: 1327-1339.
-
(2007)
EMBO J
, vol.26
, pp. 1327-1339
-
-
Hayashi, M.1
Katou, Y.2
Itoh, T.3
Tazumi, A.4
Yamada, Y.5
Taka-Hashi, T.6
Nakagawa, T.7
Shirahige, K.8
Masukata, H.9
-
60
-
-
61849184077
-
The heterochromatin protein Swi6/ HP1 activates replication origins at the pericentromeric region and silent mating-type locus
-
Hayashi MT, Takahashi TS, Nakagawa T, Nakayama J, Masukata H. 2009. The heterochromatin protein Swi6/ HP1 activates replication origins at the pericentromeric region and silent mating-type locus. Nat Cell Biol 11: 357-362.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 357-362
-
-
Hayashi, M.T.1
Takahashi, T.S.2
Nakagawa, T.3
Nakayama, J.4
Masukata, H.5
-
61
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger C, Penkett CJ, Bahler J, Nurse P. 2006. Genome-wide characterization of fission yeast DNA replication origins. EMBO J 25: 5171-5179.
-
(2006)
EMBO J
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bahler, J.3
Nurse, P.4
-
62
-
-
0034725550
-
Replication fork density increases during DNA synthesis in X. laevis egg extracts
-
Herrick J, Stanislawski P, Hyrien O, Bensimon A. 2000. Replication fork density increases during DNA synthesis in X. laevis egg extracts. J Mol Biol 300: 1133-1142.
-
(2000)
J Mol Biol
, vol.300
, pp. 1133-1142
-
-
Herrick, J.1
Stanislawski, P.2
Hyrien, O.3
Bensimon, A.4
-
63
-
-
0035931758
-
The positioning and dynamics of origins of replication in the budding yeast nucleus
-
Heun P, Laroche T, Raghuraman MK, Gasser SM. 2001. The positioning and dynamics of origins of replication in the budding yeast nucleus. J Cell Biol 152: 385-400.
-
(2001)
J Cell Biol
, vol.152
, pp. 385-400
-
-
Heun, P.1
Laroche, T.2
Raghuraman, M.K.3
Gasser, S.M.4
-
64
-
-
33645739139
-
The Ctf18 RFC-like complex positions yeast telomeres but does not specify their replication time
-
Hiraga S, Robertson ED, Donaldson AD. 2006. The Ctf18 RFC-like complex positions yeast telomeres but does not specify their replication time. EMBO J 25: 1505-1514.
-
(2006)
EMBO J
, vol.25
, pp. 1505-1514
-
-
Hiraga, S.1
Robertson, E.D.2
Donaldson, A.D.3
-
65
-
-
79959752287
-
Autosomal lyonization of replication domains during early mammalian development
-
Hiratani I, Gilbert DM. 2010. Autosomal lyonization of replication domains during early mammalian development. Adv Exp Med Biol 695: 41-58.
-
(2010)
Adv Exp Med Biol
, vol.695
, pp. 41-58
-
-
Hiratani, I.1
Gilbert, D.M.2
-
66
-
-
54949085778
-
Global reorganization of replication domains during embryonic stem cell differentiation
-
Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schubeler D, Gilbert DM. 2008. Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biol 6: e245.
-
(2008)
PLoS Biol
, pp. 6
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Yokochi, T.4
Schwaiger, M.5
Chang, C.W.6
Lyou, Y.7
Townes, T.M.8
Schubeler, D.9
Gilbert, D.M.10
-
67
-
-
65449142884
-
Replication timing and transcriptional control: Beyond cause and effect-part II
-
Hiratani I, Takebayashi SI, Lu J, Gilbert DM. 2009. Replication timing and transcriptional control: Beyond cause and effect-part II. Curr Opin Genet Dev 19: 142-149.
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 142-149
-
-
Hiratani, I.1
Takebayashi, S.I.2
Lu, J.3
Gilbert, D.M.4
-
68
-
-
75649092667
-
Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
-
Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S, et al. 2010. Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Res 20: 155-169.
-
(2010)
Genome Res
, vol.20
, pp. 155-169
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Rathjen, J.4
Kulik, M.5
Papp, B.6
Fussner, E.7
Bazett-Jones, D.P.8
Plath, K.9
Dalton, S.10
-
69
-
-
34548396264
-
Human gene organization driven by the coordination of replication and transcription
-
Huvet M, Nicolay S, Touchon M, Audit B, d'Aubenton-Carafa Y, Arneodo A, Thermes C. 2007. Human gene organization driven by the coordination of replication and transcription. Genome Res 17: 1278-1285.
-
(2007)
Genome Res
, vol.17
, pp. 1278-1285
-
-
Huvet, M.1
Nicolay, S.2
Touchon, M.3
Audit, B.4
D'Aubenton-Carafa, Y.5
Arneodo, A.6
Thermes, C.7
-
70
-
-
77649231526
-
Mathematical modelling of eu-karyotic DNA replication
-
Hyrien O, Goldar A. 2010. Mathematical modelling of eu-karyotic DNA replication. Chromosome Res 18: 147-161.
-
(2010)
Chromosome Res
, vol.18
, pp. 147-161
-
-
Hyrien, O.1
Goldar, A.2
-
71
-
-
0037319618
-
Paradoxes of eu-karyotic DNA replication: MCM proteins and the random completion problem
-
Hyrien O, Marheineke K, Goldar A. 2003. Paradoxes of eu-karyotic DNA replication: MCM proteins and the random completion problem. Bioessays 25: 116-125.
-
(2003)
Bioessays
, vol.25
, pp. 116-125
-
-
Hyrien, O.1
Marheineke, K.2
Goldar, A.3
-
72
-
-
39749176602
-
The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells
-
Jorgensen HF, Azuara V, Amoils S, Spivakov M, Terry A, Nesterova T, Cobb BS, Ramsahoye B, Merkenschlager M, Fisher AG. 2007. The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells. Genome Biol 8: R169.
-
(2007)
Genome Biol
, vol.8
-
-
Jorgensen, H.F.1
Azuara, V.2
Amoils, S.3
Spivakov, M.4
Terry, A.5
Nesterova, T.6
Cobb, B.S.7
Ramsahoye, B.8
Merkenschlager, M.9
Fisher, A.G.10
-
73
-
-
34250327950
-
Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas
-
Karnani N, Taylor C, Malhotra A, Dutta A. 2007. Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas. Genome Res 17: 865-876.
-
(2007)
Genome Res
, vol.17
, pp. 865-876
-
-
Karnani, N.1
Taylor, C.2
Malhotra, A.3
Dutta, A.4
-
74
-
-
62549132126
-
Cyclin A-Cdk1 regulates the origin firing program in mammalian cells
-
Katsuno Y, Suzuki A, Sugimura K, Okumura K, Zinel-deen DH, Shimada M, Niida H, Mizuno T, Hanaoka F, Nakanishi M. 2009. Cyclin A-Cdk1 regulates the origin firing program in mammalian cells. Proc Natl Acad Sci 106: 3184-3189.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 3184-3189
-
-
Katsuno, Y.1
Suzuki, A.2
Sugimura, K.3
Okumura, K.4
Zinel-Deen, D.H.5
Shimada, M.6
Niida, H.7
Mizuno, T.8
Hanaoka, F.9
Nakanishi, M.10
-
76
-
-
33745239698
-
Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories
-
Kitamura E, Blow JJ, Tanaka TU. 2006. Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories. Cell 125: 1297-1308.
-
(2006)
Cell
, vol.125
, pp. 1297-1308
-
-
Kitamura, E.1
Blow, J.J.2
Tanaka, T.U.3
-
77
-
-
65449160972
-
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott SR, Viggiani CJ, Tavare S, Aparicio OM. 2009. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev 23: 1077-1090.
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.R.1
Viggiani, C.J.2
Tavare, S.3
Aparicio, O.M.4
-
78
-
-
84856103786
-
Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae
-
Knott SR, Peace JM, Ostrow AZ, Gan Y, Rex AE, Viggiani CJ, Tavare S, Aparicio OM. 2012. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 148: 99-111.
-
(2012)
Cell
, vol.148
, pp. 99-111
-
-
Knott, S.R.1
Peace, J.M.2
Ostrow, A.Z.3
Gan, Y.4
Rex, A.E.5
Viggiani, C.J.6
Tavare, S.7
Aparicio, O.M.8
-
79
-
-
77953011587
-
MRC1-dependent scaling of the budding yeast DNA replication timing program
-
Koren A, Soifer I, Barkai N. 2010. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res 20: 781-790.
-
(2010)
Genome Res
, vol.20
, pp. 781-790
-
-
Koren, A.1
Soifer, I.2
Barkai, N.3
-
80
-
-
40949152974
-
Cdk1 and Cdk2 activity levels determine the efficiency of replication origin firing in Xenopus
-
Krasinska L, Besnard E, Cot E, Dohet C, Mechali M, Lemaitre JM, Fisher D. 2008. Cdk1 and Cdk2 activity levels determine the efficiency of replication origin firing in Xenopus. EMBO J 27: 758-769.
-
(2008)
EMBO J
, vol.27
, pp. 758-769
-
-
Krasinska, L.1
Besnard, E.2
Cot, E.3
Dohet, C.4
Mechali, M.5
Lemaitre, J.M.6
Fisher, D.7
-
81
-
-
78651298061
-
Highly stable loading of Mcm proteins onto chro-matin in living cells requires replication to unload
-
Kuipers MA, Stasevich TJ, Sasaki T, Wilson KA, Hazel-wood KL, McNally JG, Davidson MW, Gilbert DM. 2011. Highly stable loading of Mcm proteins onto chro-matin in living cells requires replication to unload. J Cell Biol 192: 29-41.
-
(2011)
J Cell Biol
, vol.192
, pp. 29-41
-
-
Kuipers, M.A.1
Stasevich, T.J.2
Sasaki, T.3
Wilson, K.A.4
Hazel-Wood, K.L.5
McNally, J.G.6
Davidson, M.W.7
Gilbert, D.M.8
-
82
-
-
77955079173
-
Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint
-
Kuma D, Viberg J, Nilsson AK, Chabes A. 2010. Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint. Nucleic Acids Res 38: 3975-3983.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3975-3983
-
-
Kuma, D.1
Viberg, J.2
Nilsson, A.K.3
Chabes, A.4
-
83
-
-
58249107984
-
Checkpoint-dependent regulation of origin firing and replication fork movement in response to DNA damage in fission yeast
-
Kumar S, Huberman JA. 2009. Checkpoint-dependent regulation of origin firing and replication fork movement in response to DNA damage in fission yeast. Mol Cell Biol 29: 602-611.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 602-611
-
-
Kumar, S.1
Huberman, J.A.2
-
84
-
-
77955079173
-
Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint
-
Kumar D, Viberg J, Nilsson AK, Chabes A. 2010. Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint. Nucleic Acids Res 38: 3975-3983.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3975-3983
-
-
Kumar, D.1
Viberg, J.2
Nilsson, A.K.3
Chabes, A.4
-
85
-
-
55249092105
-
DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts
-
Labit H, Perewoska I, Germe T, Hyrien O, Marheineke K. 2008. DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts. Nucleic Acids Res 36: 5623-5634.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5623-5634
-
-
Labit, H.1
Perewoska, I.2
Germe, T.3
Hyrien, O.4
Marheineke, K.5
-
86
-
-
67649126836
-
Shifts in replication timing actively affect histone acetylation during nucleo-some reassembly
-
Lande-Diner L, Zhang J, CedarH. 2009. Shifts in replication timing actively affect histone acetylation during nucleo-some reassembly. Mol Cell 34: 767-774.
-
(2009)
Mol Cell
, vol.34
, pp. 767-774
-
-
Lande-Diner, L.1
Zhang, J.2
-
87
-
-
80052919408
-
Mutation rates across budding yeast chromosome VI are correlated with replication timing
-
Lang GI, Murray AW. 2011. Mutation rates across budding yeast chromosome VI are correlated with replication timing. Genome Biol Evol 3: 799-811.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 799-811
-
-
Lang, G.I.1
Murray, A.W.2
-
88
-
-
33845405316
-
DNA replication origin interference increases the spacing between initiation events in human cells
-
Lebofsky R, Heilig R, Sonnleitner M, Weissenbach J, Ben-simon A. 2006. DNA replication origin interference increases the spacing between initiation events in human cells. Mol Biol Cell 17: 5337-5345.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 5337-5345
-
-
Lebofsky, R.1
Heilig, R.2
Sonnleitner, M.3
Weissenbach, J.4
Ben-Simon, A.5
-
89
-
-
77954155284
-
Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
-
Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, Tanurdzic M, Rabinowicz PD, Menges M, Zheng P, Main D, Murray JA, et al. 2010. Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genet 6: e1000982.
-
(2010)
PLoS Genet
, vol.6
-
-
Lee, T.J.1
Pascuzzi, P.E.2
Settlage, S.B.3
Shultz, R.W.4
Tanurdzic, M.5
Rabinowicz, P.D.6
Menges, M.7
Zheng, P.8
Main, D.9
Murray, J.A.10
-
90
-
-
82955195401
-
Molecular profiling of common fragile sites in human fibroblasts
-
Le Tallec B,Dutrillaux B,Lachages AM, Millot GA, Brison O, Debatisse M. 2011. Molecular profiling of common fragile sites in human fibroblasts. Nat Struct Mol Biol 18: 1421-1423.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 1421-1423
-
-
Le, T.B.1
Dutrillaux, B.2
Lachages, A.M.3
Millot, G.A.4
Brison, O.5
Debatisse, M.6
-
91
-
-
79551661935
-
Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site
-
Letessier A, Millot GA, Koundrioukoff S, Lachages AM, Vogt N, Hansen RS, Malfoy B, Brison O, Debatisse M. 2011. Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site. Nature 470: 120- 123.
-
(2011)
Nature 470: 120-
, pp. 123
-
-
Letessier, A.1
Millot, G.A.2
Koundrioukoff, S.3
Lachages, A.M.4
Vogt, N.5
Hansen, R.S.6
Malfoy, B.7
Brison, O.8
Debatisse, M.9
-
92
-
-
13244277994
-
The chromatin remodeling complex NoRC controls replication timing of rRNA genes
-
Li J, Santoro R, Koberna K, Grummt I. 2005. The chromatin remodeling complex NoRC controls replication timing of rRNA genes. EMBO J 24: 120-127.
-
(2005)
EMBO J
, vol.24
, pp. 120-127
-
-
Li, J.1
Santoro, R.2
Koberna, K.3
Grummt, I.4
-
93
-
-
77953208022
-
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
-
Liachko I, Bhaskar A, Lee C, Chung SC, Tye BK, Keich U. 2010. A comprehensive genome-wide map of autonomously replicating sequences in a naive genome. PLoS Genet 6: e1000946.
-
(2010)
PLoS Genet
, vol.6
-
-
Liachko, I.1
Bhaskar, A.2
Lee, C.3
Chung, S.C.4
Tye, B.K.5
Keich, U.6
-
94
-
-
79955957615
-
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation
-
Lian HY, Robertson ED, Hiraga S, Alvino GM, Colling-wood D, McCune HJ, Sridhar A, Brewer BJ, Raghu-raman MK, Donaldson AD. 2011. The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation. Mol Biol Cell 22: 1753-1765.
-
(2011)
Mol Biol Cell
, vol.22
, pp. 1753-1765
-
-
Lian, H.Y.1
Robertson, E.D.2
Hiraga, S.3
Alvino, G.M.4
Colling-Wood, D.5
McCune, H.J.6
Sridhar, A.7
Brewer, B.J.8
Raghu-Raman, M.K.9
Donaldson, A.D.10
-
95
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Ima-kaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, et al. 2009. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Ima-Kaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
96
-
-
0037599235
-
Dynamic alterations of replication timing in mammalian cells
-
Lin CM, Fu H, Martinovsky M, Bouhassira E, Aladjem MI. 2003. Dynamic alterations of replication timing in mammalian cells. Curr Biol 13: 1019-1028.
-
(2003)
Curr Biol
, vol.13
, pp. 1019-1028
-
-
Lin, C.M.1
Fu, H.2
Martinovsky, M.3
Bouhassira, E.4
Aladjem, M.I.5
-
97
-
-
77957144885
-
Damage-induced phosphorylation of Sld3 is important to block late origin firing
-
Lopez-Mosqueda J, Maas NL, Jonsson ZO, Defazio-Eli LG, Wohlschlegel J, Toczyski DP. 2010. Damage-induced phosphorylation of Sld3 is important to block late origin firing. Nature 467: 479-483.
-
(2010)
Nature
, vol.467
, pp. 479-483
-
-
Lopez-Mosqueda, J.1
Maas, N.L.2
Jonsson, Z.O.3
Defazio-Eli, L.G.4
Wohlschlegel, J.5
Toczyski, D.P.6
-
98
-
-
77953569966
-
G2 phase chromatin lacks determinants of replication timing
-
Lu J, Li F, Murphy CS, Davidson MW, Gilbert DM. 2010. G2 phase chromatin lacks determinants of replication timing. J Cell Biol 189: 967-980.
-
(2010)
J Cell Biol
, vol.189
, pp. 967-980
-
-
Lu, J.1
Li, F.2
Murphy, C.S.3
Davidson, M.W.4
Gilbert, D.M.5
-
99
-
-
79955642432
-
Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone
-
Lubelsky Y, Sasaki T, Kuipers MA, Lucas I, Le Beau MM, Carignon S, Debatisse M, Prinz JA, Dennis JH, Gilbert DM. 2011. Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone. Nucleic Acids Res 39: 3141-3155.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3141-3155
-
-
Lubelsky, Y.1
Sasaki, T.2
Kuipers, M.A.3
Lucas, I.4
Le, B.M.M.5
Carignon, S.6
Debatisse, M.7
Prinz, J.A.8
Dennis, J.H.9
Gilbert, D.M.10
-
100
-
-
77953969988
-
Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data
-
Luo H, Li J, Eshaghi M, Liu J, Karuturi RK. 2010. Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data. BMC Bioinformatics 11: 247.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 247
-
-
Luo, H.1
Li, J.2
Eshaghi, M.3
Liu, J.4
Karuturi, R.K.5
-
101
-
-
50449107544
-
Sto-chastic hybrid modeling of DNA replication across a complete genome
-
Lygeros J, Koutroumpas K, Dimopoulos S, Legouras I, Kouretas P, Heichinger C, Nurse P, Lygerou Z. 2008. Sto-chastic hybrid modeling of DNA replication across a complete genome. Proc Natl Acad Sci 105: 12295-12300.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 12295-12300
-
-
Lygeros, J.1
Koutroumpas, K.2
Dimopoulos, S.3
Legouras, I.4
Kouretas, P.5
Heichinger, C.6
Nurse, P.7
Lygerou, Z.8
-
102
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodriguez HK, Bell SP. 2004. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-3105.
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
Macalpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
103
-
-
75649109712
-
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
-
MacAlpine HK, Gordan R, Powell SK, Hartemink AJ, MacAlpine DM. 2010. Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. Genome Res 20: 201-211.
-
(2010)
Genome Res
, vol.20
, pp. 201-211
-
-
Macalpine, H.K.1
Gordan, R.2
Powell, S.K.3
Hartemink, A.J.4
Macalpine, D.M.5
-
104
-
-
82455164158
-
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
-
Mantiero D, Mackenzie A, Donaldson A, Zegerman P. 2011. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J 30: 4805-4814.
-
(2011)
EMBO J
, vol.30
, pp. 4805-4814
-
-
Mantiero, D.1
Mackenzie, A.2
Donaldson, A.3
Zegerman, P.4
-
105
-
-
84857198915
-
DNA replication induces compositional biases in yeast
-
Marsolier-Kergoat MC, Goldar A. 2012. DNA replication induces compositional biases in yeast. Mol Biol Evol 29: 893-904.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 893-904
-
-
Marsolier-Kergoat, M.C.1
Goldar, A.2
-
106
-
-
77952343862
-
S phase progression in human cells is dictated by the genetic continuity of DNA foci
-
Maya-Mendoza A, Olivares-Chauvet P, Shaw A, Jackson DA. 2010. S phase progression in human cells is dictated by the genetic continuity of DNA foci. PLoS Genet 6: e1000900.
-
(2010)
PLoS Genet
, vol.6
-
-
Maya-Mendoza, A.1
Olivares-Chauvet, P.2
Shaw, A.3
Jackson, D.A.4
-
107
-
-
61849083545
-
The temporal program of chromosome replication: Genomewide replication in clb5D Saccharomyces cerevi-siae
-
McCune HJ, Danielson LS, Alvino GM, Collingwood D, Delrow JJ, Fangman WL, Brewer BJ, Raghuraman MK. 2008. The temporal program of chromosome replication: Genomewide replication in clb5D Saccharomyces cerevi-siae. Genetics 180: 1833-1847.
-
(2008)
Genetics
, vol.180
, pp. 1833-1847
-
-
McCune, H.J.1
Danielson, L.S.2
Alvino, G.M.3
Collingwood, D.4
Delrow, J.J.5
Fangman, W.L.6
Brewer, B.J.7
Raghuraman, M.K.8
-
108
-
-
0038505671
-
Epigenomic replication: Linking epigenetics to DNA replication
-
McNairn AJ, Gilbert DM. 2003. Epigenomic replication: Linking epigenetics to DNA replication. Bioessays 25: 647-656.
-
(2003)
Bioessays
, vol.25
, pp. 647-656
-
-
McNairn, A.J.1
Gilbert, D.M.2
-
109
-
-
33947099546
-
Replication foci dynamics: Replication patterns are modulated by S-phase checkpoint kinases in fission yeast
-
Meister P, Taddei A, Ponti A, Baldacci G, Gasser SM. 2007. Replication foci dynamics: Replication patterns are modulated by S-phase checkpoint kinases in fission yeast. EMBO J 26: 1315-1326.
-
(2007)
EMBO J
, vol.26
, pp. 1315-1326
-
-
Meister, P.1
Taddei, A.2
Ponti, A.3
Baldacci, G.4
Gasser, S.M.5
-
110
-
-
2442582392
-
Visualization of altered replication dynamics after DNA damage in human cells
-
Merrick CJ, Jackson D, Diffley JF. 2004. Visualization of altered replication dynamics after DNA damage in human cells. J Biol Chem 279: 20067-20075.
-
(2004)
J Biol Chem
, vol.279
, pp. 20067-20075
-
-
Merrick, C.J.1
Jackson, D.2
Diffley, J.F.3
-
111
-
-
40549124612
-
Checkpoint effects and telomere amplification during DNA re-replication in fission yeast
-
Mickle KL, Oliva A, Huberman JA, Leatherwood J. 2007a. Checkpoint effects and telomere amplification during DNA re-replication in fission yeast. BMC Mol Biol 8: 119.
-
(2007)
BMC Mol Biol
, vol.8
, pp. 119
-
-
Mickle, K.L.1
Oliva, A.2
Huberman, J.A.3
Leatherwood, J.4
-
112
-
-
39049159302
-
Checkpoint independence of most DNA replication origins in fission yeast
-
Mickle KL, Ramanathan S, Rosebrock A, Oliva A, Chau-dari A, Yompakdee C, Scott D, Leatherwood J, Huber-man JA. 2007b. Checkpoint independence of most DNA replication origins in fission yeast. BMC Mol Biol 8: 112.
-
(2007)
BMC Mol Biol
, vol.8
, pp. 112
-
-
Mickle, K.L.1
Ramanathan, S.2
Rosebrock, A.3
Oliva, A.4
Chau-Dari, A.5
Yompakdee, C.6
Scott, D.7
Leatherwood, J.8
Huber-Man, J.A.9
-
113
-
-
84867182048
-
Conservation of replication timing reveals global and local regulation of replication origin activity
-
Muller CA, Nieduszynski CA. 2012. Conservation of replication timing reveals global and local regulation of replication origin activity. Genome Res 22: 1953-1962.
-
(2012)
Genome Res
, vol.22
, pp. 1953-1962
-
-
Muller, C.A.1
Nieduszynski, C.A.2
-
114
-
-
79953065005
-
Genome organization in and around the nucleolus
-
Nemeth A, Langst G. 2011. Genome organization in and around the nucleolus. Trends Genet 27: 149-156.
-
(2011)
Trends Genet
, vol.27
, pp. 149-156
-
-
Nemeth, A.1
Langst, G.2
-
115
-
-
27944452746
-
Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development
-
Norio P, Kosiyatrakul S, Yang Q, Guan Z, Brown NM, Thomas S, Riblet R, Schildkraut CL. 2005. Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development. Mol Cell 20: 575-587.
-
(2005)
Mol Cell
, vol.20
, pp. 575-587
-
-
Norio, P.1
Kosiyatrakul, S.2
Yang, Q.3
Guan, Z.4
Brown, N.M.5
Thomas, S.6
Riblet, R.7
Schildkraut, C.L.8
-
116
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N. 2006. DNA replication origins fire stochastically in fission yeast. Mol Biol Cell 17: 308-316.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 308-316
-
-
Patel, P.K.1
Arcangioli, B.2
Baker, S.P.3
Bensimon, A.4
Rhind, N.5
-
117
-
-
59449092118
-
The Hsk1(Cdc7) replication kinase regulates origin efficiency
-
Patel PK, Kommajosyula N, Rosebrock A, Bensimon A, Leatherwood J, Bechhoefer J, Rhind N. 2008. The Hsk1(Cdc7) replication kinase regulates origin efficiency. Mol Biol Cell 19: 5550-5558.
-
(2008)
Mol Biol Cell
, vol.19
, pp. 5550-5558
-
-
Patel, P.K.1
Kommajosyula, N.2
Rosebrock, A.3
Bensimon, A.4
Leatherwood, J.5
Bechhoefer, J.6
Rhind, N.7
-
118
-
-
77649236302
-
Domain-wide regulation of DNA replication timing during mammalian development
-
Pope BD, Hiratani I, Gilbert DM. 2010. Domain-wide regulation of DNA replication timing during mammalian development. Chromosome Res 18: 127-136.
-
(2010)
Chromosome Res
, vol.18
, pp. 127-136
-
-
Pope, B.D.1
Hiratani, I.2
Gilbert, D.M.3
-
119
-
-
80855157444
-
DNA replication timing is maintained genome-wide in primary human myo-blasts independent ofD4Z4 contraction in FSH muscular dystrophy
-
Pope BD, Tsumagari K, Battaglia D, Ryba T, Hiratani I, Ehrlich M, Gilbert DM. 2011. DNA replication timing is maintained genome-wide in primary human myo-blasts independent ofD4Z4 contraction in FSH muscular dystrophy. PLoS ONE 6: e27413.
-
(2011)
PLoS ONE
, vol.6
-
-
Pope, B.D.1
Tsumagari, K.2
Battaglia, D.3
Ryba, T.4
Hiratani, I.5
Ehrlich, M.6
Gilbert, D.M.7
-
120
-
-
34249006235
-
Chromatin structure and evolution in the human genome
-
Prendergast JG, Campbell H, Gilbert N, Dunlop MG, Bick-more WA, Semple CA. 2007. Chromatin structure and evolution in the human genome. BMC Evol Biol 7: 72.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 72
-
-
Prendergast, J.G.1
Campbell, H.2
Gilbert, N.3
Dunlop, M.G.4
Bick-More, W.A.5
Semple, C.A.6
-
121
-
-
77649233017
-
Molecular analysis of the replication program in unicellular model organisms
-
Raghuraman MK, Brewer BJ. 2010. Molecular analysis of the replication program in unicellular model organisms. Chromosome Res 18: 19-34.
-
(2010)
Chromosome Res
, vol.18
, pp. 19-34
-
-
Raghuraman, M.K.1
Brewer, B.J.2
-
122
-
-
0035812808
-
Wodicka L,Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL
-
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L,Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. 2001. Replication dynamics of the yeast genome. Science 294: 115-121.
-
(2001)
Replication Dynamics of the Yeast Genome. Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
-
124
-
-
33751520767
-
DNA replication timing: Random thoughts about origin firing
-
Rhind N. 2006. DNA replication timing: Random thoughts about origin firing. Nat Cell Biol 8: 1313-1316.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 1313-1316
-
-
Rhind, N.1
-
125
-
-
77649233258
-
Reconciling stochastic origin firing with defined replication timing
-
Rhind N, Yang SC, Bechhoefer J. 2010. Reconciling stochastic origin firing with defined replication timing. Chromosome Res 18: 35-43.
-
(2010)
Chromosome Res
, vol.18
, pp. 35-43
-
-
Rhind, N.1
Yang, S.C.2
Bechhoefer, J.3
-
126
-
-
77952994784
-
Evo-lutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
-
Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM. 2010. Evo-lutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res 20: 761-770.
-
(2010)
Genome Res
, vol.20
, pp. 761-770
-
-
Ryba, T.1
Hiratani, I.2
Lu, J.3
Itoh, M.4
Kulik, M.5
Zhang, J.6
Schulz, T.C.7
Robins, A.J.8
Dalton, S.9
Gilbert, D.M.10
-
127
-
-
79958158210
-
Genome-scale analysis of replication timing: From bench to bioinformatics
-
Ryba T, Battaglia D, Pope BD, Hiratani I, Gilbert DM. 2011. Genome-scale analysis of replication timing: From bench to bioinformatics. Nat Protoc 6: 870-895.
-
(2011)
Nat Protoc
, vol.6
, pp. 870-895
-
-
Ryba, T.1
Battaglia, D.2
Pope, B.D.3
Hiratani, I.4
Gilbert, D.M.5
-
128
-
-
84866384009
-
Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia
-
Ryba T, Battaglia D, Chang BH, Shirley JW, Buckley Q, Pope BD, Devidas M, Druker BJ, Gilbert DM. 2012. Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia. Genome Res 22: 1833-1844.
-
(2012)
Genome Res
, vol.22
, pp. 1833-1844
-
-
Ryba, T.1
Battaglia, D.2
Chang, B.H.3
Shirley, J.W.4
Buckley, Q.5
Pope, B.D.6
Devidas, M.7
Druker, B.J.8
Gilbert, D.M.9
-
129
-
-
9444269829
-
Stable chromosomal units determine the spatial and temporal organization of DNA replication
-
Sadoni N, Cardoso MC, Stelzer EH, Leonhardt H, Zink D. 2004. Stable chromosomal units determine the spatial and temporal organization of DNA replication. J Cell Sci 117: 5353-5365.
-
(2004)
J Cell Sci
, vol.117
, pp. 5353-5365
-
-
Sadoni, N.1
Cardoso, M.C.2
Stelzer, E.H.3
Leonhardt, H.4
Zink, D.5
-
130
-
-
0024437947
-
The extreme mutatoreffect of Escherichia coli mutD5 results from saturation of mismatch repair by excessive DNA replication errors
-
Schaaper RM, Radman M.1989. The extreme mutatoreffect of Escherichia coli mutD5 results from saturation of mismatch repair by excessive DNA replication errors. EMBO J 8: 3511-3516.
-
(1989)
EMBO J
, vol.8
, pp. 3511-3516
-
-
Schaaper, R.M.1
Radman, M.2
-
132
-
-
77956672597
-
Single-molecule analysis reveals changes in the DNA replication program for the POU5F1 locus upon human embryonic stem cell differentiation
-
Schultz SS, Desbordes SC, Du Z, Kosiyatrakul S, Lipchina I, Studer L, Schildkraut CL. 2010. Single-molecule analysis reveals changes in the DNA replication program for the POU5F1 locus upon human embryonic stem cell differentiation. Mol Cell Biol 30: 4521-4534.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 4521-4534
-
-
Schultz, S.S.1
Desbordes, S.C.2
Du, Z.3
Kosiyatrakul, S.4
Lipchina, I.5
Studer, L.6
Schildkraut, C.L.7
-
133
-
-
61849177618
-
Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome
-
Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schubeler D. 2009. Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome. Genes Dev 23: 589-601.
-
(2009)
Genes Dev
, vol.23
, pp. 589-601
-
-
Schwaiger, M.1
Stadler, M.B.2
Bell, O.3
Kohler, H.4
Oakeley, E.J.5
Schubeler, D.6
-
134
-
-
77953004689
-
Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome
-
Schwaiger M, Kohler H, Oakeley EJ, Stadler MB, Schu-beler D. 2010. Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome. Genome Res 20: 771-780.
-
(2010)
Genome Res
, vol.20
, pp. 771-780
-
-
Schwaiger, M.1
Kohler, H.2
Oakeley, E.J.3
Stadler, M.B.4
Schu-Beler, D.5
-
135
-
-
77949368063
-
GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome
-
Sekedat MD, Fenyo D, Rogers RS, Tackett AJ, Aitchison JD, Chait BT. 2010. GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome. Mol Syst Biol 6: 353.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 353
-
-
Sekedat, M.D.1
Fenyo, D.2
Rogers, R.S.3
Tackett, A.J.4
Aitchison, J.D.5
Chait, B.T.6
-
136
-
-
0032497548
-
Regulation of DNA-replication origins during cell-cycle progression
-
Shirahige K, Hori Y, Shiraishi K, Yamashita M, Takahashi K, Obuse C, Tsurimoto T, Yoshikawa H. 1998. Regulation of DNA-replication origins during cell-cycle progression. Nature 395: 618-621.
-
(1998)
Nature
, vol.395
, pp. 618-621
-
-
Shirahige, K.1
Hori, Y.2
Shiraishi, K.3
Yamashita, M.4
Takahashi, K.5
Obuse, C.6
Tsurimoto, T.7
Yoshikawa, H.8
-
137
-
-
3543064379
-
Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint
-
Silverman J, Takai H, Buonomo SB, Eisenhaber F, de Lange T. 2004. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev 18: 2108-2119.
-
(2004)
Genes Dev
, vol.18
, pp. 2108-2119
-
-
Silverman, J.1
Takai, H.2
Buonomo, S.B.3
Eisenhaber, F.4
de Lange, T.5
-
138
-
-
0036929125
-
DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters
-
Sporbert A, Gahl A, Ankerhold R, Leonhardt H, Cardoso MC. 2002. DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters. Mol Cell 10: 1355-1365.
-
(2002)
Mol Cell
, vol.10
, pp. 1355-1365
-
-
Sporbert, A.1
Gahl, A.2
Ankerhold, R.3
Leonhardt, H.4
Cardoso, M.C.5
-
139
-
-
63449141981
-
Human mutation rate associated with DNA replication timing
-
Stamatoyannopoulos JA, Adzhubei I, Thurman RE, Kryu-kov GV, Mirkin SM, Sunyaev SR. 2009. Human mutation rate associated with DNA replication timing. Nat Genet 41: 393-395.
-
(2009)
Nat Genet
, vol.41
, pp. 393-395
-
-
Stamatoyannopoulos, J.A.1
Adzhubei, I.2
Thurman, R.E.3
Kryu-Kov, G.V.4
Mirkin, S.M.5
Sunyaev, S.R.6
-
140
-
-
84860201732
-
The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe
-
Steglich B, Filion G, van Steensel B, Ekwall K. 2012. The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe. Nucleus 3: 77-87.
-
(2012)
Nucleus
, vol.3
, pp. 77-87
-
-
Steglich, B.1
Filion, G.2
van Steensel, B.3
Ekwall, K.4
-
141
-
-
0033556028
-
Telomeric chromatin modulates replication timing near chromosome ends
-
Stevenson JB, Gottschling DE. 1999. Telomeric chromatin modulates replication timing near chromosome ends. Genes Dev 13: 146-151.
-
(1999)
Genes Dev
, vol.13
, pp. 146-151
-
-
Stevenson, J.B.1
Gottschling, D.E.2
-
142
-
-
13544249776
-
Regulation of replication at the R/G chromosomal band boundary and pericen-tromeric heterochromatin of mammalian cells
-
Takebayashi S, Sugimura K, Saito T, Sato C, Fukushima Y, Taguchi H, Okumura K. 2005. Regulation of replication at the R/G chromosomal band boundary and pericen-tromeric heterochromatin of mammalian cells. Exp Cell Res 304: 162-174.
-
(2005)
Exp Cell Res
, vol.304
, pp. 162-174
-
-
Takebayashi, S.1
Sugimura, K.2
Saito, T.3
Sato, C.4
Fukushima, Y.5
Taguchi, H.6
Okumura, K.7
-
143
-
-
84864527294
-
Chromatin-interaction compartment switch at de-velopmentally regulated chromosomal domains reveals an unusual principle of chromatin folding
-
Takebayashi S, Dileep V, Ryba T, Dennis JH, Gilbert DM. 2012. Chromatin-interaction compartment switch at de-velopmentally regulated chromosomal domains reveals an unusual principle of chromatin folding. Proc Natl Acad Sci 109: 12574-12579.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 12574-12579
-
-
Takebayashi, S.1
Dileep, V.2
Ryba, T.3
Dennis, J.H.4
Gilbert, D.M.5
-
144
-
-
84155171119
-
Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing
-
Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H. 2011. Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr Biol 21: 2055-2063.
-
(2011)
Curr Biol
, vol.21
, pp. 2055-2063
-
-
Tanaka, S.1
Nakato, R.2
Katou, Y.3
Shirahige, K.4
Araki, H.5
-
145
-
-
84866479376
-
Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast
-
Tazumi A, Fukuura M, Nakato R, Kishimoto A, Takenaka T, Ogawa S, Song JH, Takahashi TS, Nakagawa T, Shira-hige K, et al. 2012. Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast. Genes Dev 26: 2050-2062.
-
(2012)
Genes Dev
, vol.26
, pp. 2050-2062
-
-
Tazumi, A.1
Fukuura, M.2
Nakato, R.3
Kishimoto, A.4
Takenaka, T.5
Ogawa, S.6
Song, J.H.7
Takahashi, T.S.8
Nakagawa, T.9
Shira-Hige, K.10
-
146
-
-
76149140088
-
Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels
-
Thomson AM, Gillespie PJ, Blow JJ. 2010. Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels. J Cell Biol 188: 209-221.
-
(2010)
J Cell Biol
, vol.188
, pp. 209-221
-
-
Thomson, A.M.1
Gillespie, P.J.2
Blow, J.J.3
-
147
-
-
22244455429
-
Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins
-
Touchon M, Nicolay S, Audit B, Brodie EB, Au-benton-Carafa Y, Arneodo A, Thermes C. 2005. Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins. Proc Natl Acad Sci 102: 9836-9841.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 9836-9841
-
-
Touchon, M.1
Nicolay, S.2
Audit, B.3
Brodie, E.B.4
Au-benton-Carafa, Y.5
Arneodo, A.6
Thermes, C.7
-
148
-
-
0036863542
-
Histone acetylation regulates the timeof replication origin firing
-
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. 2002. Histone acetylation regulates the timeof replication origin firing. Mol Cell 10: 1223-1233.
-
(2002)
Mol Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
149
-
-
31644436473
-
Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus
-
Williams RR, Azuara V, Perry P, Sauer S, Dvorkina M, Jor-gensen H, Roix J, McQueen P, Misteli T, Merken-schlager M, et al. 2006. Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus. J Cell Sci 119: 132-140.
-
(2006)
J Cell Sci
, vol.119
, pp. 132-140
-
-
Williams, R.R.1
Azuara, V.2
Perry, P.3
Sauer, S.4
Dvorkina, M.5
Jor-Gensen, H.6
Roix, J.7
McQueen, P.8
Misteli, T.9
Merken-Schlager, M.10
-
150
-
-
33747432986
-
Excess Mcm2-7 license dormant origins of replication that can be used under conditions of replicative stress
-
Woodward AM, Gohler T,Luciani MG, Oehlmann M,Ge X, Gartner A, Jackson DA, Blow JJ. 2006. Excess Mcm2-7 license dormant origins of replication that can be used under conditions of replicative stress. J Cell Biol 173: 673-683.
-
(2006)
J Cell Biol
, vol.173
, pp. 673-683
-
-
Woodward, A.M.1
Gohler, T.2
Luciani, M.G.3
Oehlmann, M.4
Ge, X.5
Gartner, A.6
Jackson, D.A.7
Blow, J.J.8
-
151
-
-
61349201535
-
Establishing the program of origin firing during S phase in fission yeast
-
Wu PY, Nurse P. 2009. Establishing the program of origin firing during S phase in fission yeast. Cell 136: 852-864.
-
(2009)
Cell
, vol.136
, pp. 852-864
-
-
Wu, P.Y.1
Nurse, P.2
-
152
-
-
19644381697
-
Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states
-
Wu R, Terry AV, Singh PB, Gilbert DM. 2005. Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states. Mol Biol Cell 16: 2872- 2881.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 2872-2881
-
-
Wu, R.1
Terry, A.V.2
Singh, P.B.3
Gilbert, D.M.4
-
153
-
-
33746082480
-
Uncoupling global and fine-tuning replication timing determinants for mouse pericentric heterochromatin
-
Wu R, Singh PB, Gilbert DM. 2006. Uncoupling global and fine-tuning replication timing determinants for mouse pericentric heterochromatin. J Cell Biol 174: 185-194.
-
(2006)
J Cell Biol
, vol.174
, pp. 185-194
-
-
Wu, R.1
Singh, P.B.2
Gilbert, D.M.3
-
154
-
-
84859927986
-
Genome-wide identification and characterization of replication origins by deep sequencing
-
Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kom-majosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, et al. 2012. Genome-wide identification and characterization of replication origins by deep sequencing. Genome Biol 13: R27.
-
(2012)
Genome Biol
, vol.13
-
-
Xu, J.1
Yanagisawa, Y.2
Tsankov, A.M.3
Hart, C.4
Aoki, K.5
Kom-Majosyula, N.6
Steinmann, K.E.7
Bochicchio, J.8
Russ, C.9
Regev, A.10
-
155
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
Yabuki N, Terashima H, Kitada K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789.
-
(2002)
Genes Cells
, vol.7
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
156
-
-
77957369058
-
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture
-
Yaffe E, Farkash-Amar S, Polten A, Yakhini Z, Tanay A, Simon I. 2010. Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture. PLoS Genet 6: e1001011.
-
(2010)
PLoS Genet
, vol.6
-
-
Yaffe, E.1
Farkash-Amar, S.2
Polten, A.3
Yakhini, Z.4
Tanay, A.5
Simon, I.6
-
157
-
-
84866427034
-
Rif1 regulates the replication timing domains on the human genome
-
Yamazaki S, Ishii A, Kanoh Y, Oda M, Nishito Y, Masai H. 2012. Rif1 regulates the replication timing domains on the human genome. EMBO J 31: 3667-3677.
-
(2012)
EMBO J
, vol.31
, pp. 3667-3677
-
-
Yamazaki, S.1
Ishii, A.2
Kanoh, Y.3
Oda, M.4
Nishito, Y.5
Masai, H.6
-
158
-
-
55849108473
-
How Xenopus laevis embryos replicate reliably: Investigating the random-completion problem
-
Yang SC, Bechhoefer J. 2008. How Xenopus laevis embryos replicate reliably: Investigating the random-completion problem. Phys Rev E Stat Nonlin Soft Matter Phys 78: 041-917.
-
(2008)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.78
, pp. 041-917
-
-
Yang, S.C.1
Bechhoefer, J.2
-
159
-
-
77956253770
-
Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing
-
Yang SC, Rhind N, Bechhoefer J. 2010. Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing. Mol Syst Biol 6: 404.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 404
-
-
Yang, S.C.1
Rhind, N.2
Bechhoefer, J.3
-
160
-
-
78649969382
-
Uncoupling of sister replisomes during eukaryotic DNA replication
-
Yardimci H, Loveland AB, Habuchi S, van Oijen AM, Walter JC. 2010. Uncoupling of sister replisomes during eukaryotic DNA replication. Mol Cell 40: 834-840.
-
(2010)
Mol Cell
, vol.40
, pp. 834-840
-
-
Yardimci, H.1
Loveland, A.B.2
Habuchi, S.3
van Oijen, A.M.4
Walter, J.C.5
-
161
-
-
73349139918
-
G9a selectively represses a class of late-replicating genes at the nuclear periphery
-
Yokochi T, Poduch K, Ryba T, Lu J, Hiratani I, Tachibana M, Shinkai Y, Gilbert DM. 2009. G9a selectively represses a class of late-replicating genes at the nuclear periphery. Proc Natl Acad Sci 106: 19363-19368.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 19363-19368
-
-
Yokochi, T.1
Poduch, K.2
Ryba, T.3
Lu, J.4
Hiratani, I.5
Tachibana, M.6
Shinkai, Y.7
Gilbert, D.M.8
-
162
-
-
0037019025
-
Control of replication timing by a transcriptional silencer
-
Zappulla DC, Sternglanz R,Leatherwood J, Control of replication timing by a transcriptional silencer. Curr Biol 12: 869-875.
-
Curr Biol
, vol.12
, pp. 869-875
-
-
Zappulla, D.C.1
Sternglanz, R.2
-
163
-
-
77957149919
-
Checkpoint-dependent inhibition of DNA replication initiation by Sld3 and Dbf4 phosphorylation
-
Zegerman P, Diffley JF. 2010. Checkpoint-dependent inhibition of DNA replication initiation by Sld3 and Dbf4 phosphorylation. Nature 467: 474-478.
-
(2010)
Nature
, vol.467
, pp. 474-478
-
-
Zegerman, P.1
Diffley, J.F.2
-
164
-
-
0037078986
-
Establishment of transcriptional competence in early and late S phase
-
Zhang J, Xu F, Hashimshony T, Keshet I, Cedar H. 2002. Establishment of transcriptional competence in early and late S phase. Nature 420: 198-202.
-
(2002)
Nature
, vol.420
, pp. 198-202
-
-
Zhang, J.1
Xu, F.2
Hashimshony, T.3
Keshet, I.4
Cedar, H.5
|