-
1
-
-
84857216671
-
The mutational profile of the yeast genome is shaped by replication
-
Agier N, Fischer G. 2012. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol 29: 905-913.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 905-913
-
-
Agier, N.1
Fischer, G.2
-
2
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae
-
DOI 10.1128/MCB.24.11.4769-4780.2004
-
Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM. 2004. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol 24: 4769-4780. (Pubitemid 38668043)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.11
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
3
-
-
78049415820
-
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
-
doi: 10.1371/journal.pgen.1001092
-
Berbenetz NM, Nislow C, Brown GW. 2010. Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet 6. e1001092. doi: 10.1371/journal.pgen.1001092.
-
(2010)
PLoS Genet
, vol.6
-
-
Berbenetz, N.M.1
Nislow, C.2
Brown, G.W.3
-
4
-
-
33947308706
-
Early Replication of Short Telomeres in Budding Yeast
-
DOI 10.1016/j.cell.2007.01.041, PII S0092867407002425
-
Bianchi A, Shore D. 2007. Early replication of short telomeres in budding yeast. Cell 128: 1051-1062. (Pubitemid 46437258)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1051-1062
-
-
Bianchi, A.1
Shore, D.2
-
5
-
-
79953198187
-
Mutations in the pre-replication complex cause Meier-Gorlin syndrome
-
Bicknell LS, Bongers EM, Leitch A, Brown S, Schoots J, Harley ME, Aftimos S, Al-Aama JY, Bober M, Brown PA, et al. 2011a. Mutations in the pre-replication complex cause Meier-Gorlin syndrome. Nat Genet 43: 356-359.
-
(2011)
Nat Genet
, vol.43
, pp. 356-359
-
-
Bicknell, L.S.1
Bongers, E.M.2
Leitch, A.3
Brown, S.4
Schoots, J.5
Harley, M.E.6
Aftimos, S.7
Al-Aama, J.Y.8
Bober, M.9
Brown, P.A.10
-
6
-
-
79953167422
-
Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome
-
Bicknell LS, Walker S, Klingseisen A, Stiff T, Leitch A, Kerzendorfer C, Martin CA, Yeyati P, Al Sanna N, Bober M, et al. 2011b. Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome. Nat Genet 43: 350-355.
-
(2011)
Nat Genet
, vol.43
, pp. 350-355
-
-
Bicknell, L.S.1
Walker, S.2
Klingseisen, A.3
Stiff, T.4
Leitch, A.5
Kerzendorfer, C.6
Martin, C.A.7
Yeyati, P.8
Al Sanna, N.9
Bober, M.10
-
7
-
-
49449103939
-
Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site
-
Chang F, Theis JF, Miller J, Nieduszynski CA, Newlon CS, Weinreich M. 2008. Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site. Mol Cell Biol 28: 5071-5081.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5071-5081
-
-
Chang, F.1
Theis, J.F.2
Miller, J.3
Nieduszynski, C.A.4
Newlon, C.S.5
Weinreich, M.6
-
8
-
-
77950661675
-
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
-
Chen CL, Rappailles A, Duquenne L, Huvet M, Guilbaud G, Farinelli L, Audit B, d'Aubenton-Carafa Y, Arneodo A, Hyrien O, et al. 2010. Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Genome Res 20: 447-457.
-
(2010)
Genome Res
, vol.20
, pp. 447-457
-
-
Chen, C.L.1
Rappailles, A.2
Duquenne, L.3
Huvet, M.4
Guilbaud, G.5
Farinelli, L.6
Audit, B.7
D'Aubenton-Carafa, Y.8
Arneodo, A.9
Hyrien, O.10
-
9
-
-
0036791764
-
Ku complex controls the replication time of DNA in telomere regions
-
Cosgrove AJ, Nieduszynski CA, Donaldson AD. 2002. Ku complex controls the replication time of DNA in telomere regions. Genes Dev 16: 2485-2490.
-
(2002)
Genes Dev
, vol.16
, pp. 2485-2490
-
-
Cosgrove, A.J.1
Nieduszynski, C.A.2
Donaldson, A.D.3
-
10
-
-
78549290265
-
Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response
-
Crabbe L, Thomas A, Pantesco V, De Vos J, Pasero P, Lengronne A. 2010. Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response. Nat Struct Mol Biol 17: 1391-1397.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1391-1397
-
-
Crabbe, L.1
Thomas, A.2
Pantesco, V.3
De Vos, J.4
Pasero, P.5
Lengronne, A.6
-
12
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24: 748-753.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
MacAlpine, D.M.5
-
13
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ. 2006. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-155.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
14
-
-
71549122891
-
Centromere replication timing determines different forms of genomic instability in Saccharomyces cerevisiae checkpoint mutants during replication stress
-
Feng W, Bachant J, Collingwood D, Raghuraman MK, Brewer BJ. 2009. Centromere replication timing determines different forms of genomic instability in Saccharomyces cerevisiae checkpoint mutants during replication stress. Genetics 183: 1249-1260.
-
(2009)
Genetics
, vol.183
, pp. 1249-1260
-
-
Feng, W.1
Bachant, J.2
Collingwood, D.3
Raghuraman, M.K.4
Brewer, B.J.5
-
15
-
-
0034713383
-
Chromosomal evolution in Saccharomyces
-
DOI 10.1038/35013058
-
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ. 2000. Chromosomal evolution in Saccharomyces. Nature 405: 451-454. (Pubitemid 30367420)
-
(2000)
Nature
, vol.405
, Issue.6785
, pp. 451-454
-
-
Fischer, G.1
James, S.A.2
Roberts, I.N.3
Oliver, S.G.4
Louis, E.J.5
-
16
-
-
0029781449
-
Multiple determinants controlling activation of yeast replication origins late in S phase
-
Friedman KL, Diller JD, Ferguson BM, Nyland SV, Brewer BJ, Fangman WL. 1996. Multiple determinants controlling activation of yeast replication origins late in S phase. Genes Dev 10: 1595-1607. (Pubitemid 26268865)
-
(1996)
Genes and Development
, vol.10
, Issue.13
, pp. 1595-1607
-
-
Friedman, K.L.1
Diller, J.D.2
Ferguson, B.M.3
Nyland, S.V.M.4
Brewer, B.J.5
Fangman, W.L.6
-
18
-
-
79953203480
-
Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome
-
Guernsey DL, Matsuoka M, Jiang H, Evans S, Macgillivray C, Nightingale M, Perry S, Ferguson M, LeBlanc M, Paquette J, et al. 2011. Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome. Nat Genet 43: 360-364.
-
(2011)
Nat Genet
, vol.43
, pp. 360-364
-
-
Guernsey, D.L.1
Matsuoka, M.2
Jiang, H.3
Evans, S.4
Macgillivray, C.5
Nightingale, M.6
Perry, S.7
Ferguson, M.8
LeBlanc, M.9
Paquette, J.10
-
19
-
-
65449160972
-
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott SRV, Viggiani CJ, Tavare S, Aparicio OM. 2009. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev 23: 1077-1090.
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.R.V.1
Viggiani, C.J.2
Tavare, S.3
Aparicio, O.M.4
-
20
-
-
84856103786
-
Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae
-
Knott SR, Peace JM, Ostrow AZ, Gan Y, Rex AE, Viggiani CJ, Tavare S, Aparicio OM. 2012. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 148: 99-111.
-
(2012)
Cell
, vol.148
, pp. 99-111
-
-
Knott, S.R.1
Peace, J.M.2
Ostrow, A.Z.3
Gan, Y.4
Rex, A.E.5
Viggiani, C.J.6
Tavare, S.7
Aparicio, O.M.8
-
21
-
-
77953011587
-
MRC1-dependent scaling of the budding yeast DNA replication timing program
-
Koren A, Soifer I, Barkai N. 2010a. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res 20: 781-790.
-
(2010)
Genome Res
, vol.20
, pp. 781-790
-
-
Koren, A.1
Soifer, I.2
Barkai, N.3
-
22
-
-
77957337127
-
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase
-
doi: 10.1371/journal.pgen.1001068
-
Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. 2010b. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet 6. e1001068. doi: 10.1371/journal.pgen.1001068.
-
(2010)
PLoS Genet
, vol.6
-
-
Koren, A.1
Tsai, H.J.2
Tirosh, I.3
Burrack, L.S.4
Barkai, N.5
Berman, J.6
-
23
-
-
80052919408
-
Mutation rates across budding yeast chromosome VI are correlated with replication timing
-
Lang GI, Murray AW. 2011. Mutation rates across budding yeast chromosome VI are correlated with replication timing. Genome Biol Evol 3: 799-811.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 799-811
-
-
Lang, G.I.1
Murray, A.W.2
-
24
-
-
79551661935
-
Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site
-
Letessier A, Millot GA, Koundrioukoff S, Lachages AM, Vogt N, Hansen RS, Malfoy B, Brison O, Debatisse M. 2011. Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site. Nature 470: 120-123.
-
(2011)
Nature
, vol.470
, pp. 120-123
-
-
Letessier, A.1
Millot, G.A.2
Koundrioukoff, S.3
Lachages, A.M.4
Vogt, N.5
Hansen, R.S.6
Malfoy, B.7
Brison, O.8
Debatisse, M.9
-
25
-
-
77953208022
-
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
-
doi: 10.1371/journal.pgen.1000946
-
Liachko I, Bhaskar A, Lee C, Chung SC, Tye BK, Keich U. 2010. A comprehensive genome-wide map of autonomously replicating sequences in a naive genome. PLoS Genet 6: e1000946. doi: 10.1371/journal.pgen.1000946.
-
(2010)
PLoS Genet
, vol.6
-
-
Liachko, I.1
Bhaskar, A.2
Lee, C.3
Chung, S.C.4
Tye, B.K.5
Keich, U.6
-
26
-
-
84455173851
-
Novel features of ARS selection in budding yeast Lachancea kluyveri
-
doi: 10.1186/1471-2164-12-633
-
Liachko I, Tanaka E, Cox K, Chung SC, Yang L, Seher A, Hallas L, Cha E, Kang G, Pace H, et al. 2011. Novel features of ARS selection in budding yeast Lachancea kluyveri. BMC Genomics 12: 633. doi: 10.1186/1471-2164-12-633.
-
(2011)
BMC Genomics
, vol.12
, pp. 633
-
-
Liachko, I.1
Tanaka, E.2
Cox, K.3
Chung, S.C.4
Yang, L.5
Seher, A.6
Hallas, L.7
Cha, E.8
Kang, G.9
Pace, H.10
-
27
-
-
79955957615
-
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation
-
Lian HY, Robertson ED, Hiraga S, Alvino GM, Collingwood D, McCune HJ, Sridhar A, Brewer BJ, Raghuraman MK, Donaldson AD. 2011. The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation. Mol Biol Cell 22: 1753-1765.
-
(2011)
Mol Biol Cell
, vol.22
, pp. 1753-1765
-
-
Lian, H.Y.1
Robertson, E.D.2
Hiraga, S.3
Alvino, G.M.4
Collingwood, D.5
McCune, H.J.6
Sridhar, A.7
Brewer, B.J.8
Raghuraman, M.K.9
Donaldson, A.D.10
-
28
-
-
0035104474
-
Nucleosomes positioned by ORC facilitate the initiation of DNA replication
-
DOI 10.1016/S1097-2765(01)00151-4
-
Lipford JR, Bell SP. 2001. Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol Cell 7: 21-30. (Pubitemid 32162896)
-
(2001)
Molecular Cell
, vol.7
, Issue.1
, pp. 21-30
-
-
Lipford, J.R.1
Bell, S.P.2
-
29
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, et al. 2009a. Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
James, S.A.6
Davey, R.P.7
Roberts, I.N.8
Burt, A.9
Koufopanou, V.10
-
30
-
-
70349668987
-
Segregating YKU80 and TLC1 alleles underlying natural variation in telomere properties in wild yeast
-
doi: 10.1371/journal.pgen.1000659
-
Liti G, Haricharan S, Cubillos FA, Tierney AL, Sharp S, Bertuch AA, Parts L, Bailes E, Louis EJ. 2009b. Segregating YKU80 and TLC1 alleles underlying natural variation in telomere properties in wild yeast. PLoS Genet 5: e1000659. doi: 10.1371/journal.pgen.1000659.
-
(2009)
PLoS Genet
, vol.5
-
-
Liti, G.1
Haricharan, S.2
Cubillos, F.A.3
Tierney, A.L.4
Sharp, S.5
Bertuch, A.A.6
Parts, L.7
Bailes, E.8
Louis, E.J.9
-
31
-
-
82455164158
-
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
-
Mantiero D, Mackenzie A, Donaldson A, Zegerman P. 2011. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J 30: 4805-4814.
-
(2011)
EMBO J
, vol.30
, pp. 4805-4814
-
-
Mantiero, D.1
Mackenzie, A.2
Donaldson, A.3
Zegerman, P.4
-
32
-
-
84857198915
-
DNA replication induces compositional biases in yeast
-
Marsolier-Kergoat MC, Goldar A. 2012. DNA replication induces compositional biases in yeast. Mol Biol Evol 29: 893-904.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 893-904
-
-
Marsolier-Kergoat, M.C.1
Goldar, A.2
-
33
-
-
68149100965
-
Telomere behavior in a hybrid yeast
-
Martin OC, DeSevo CG, Guo BZ, Koshland DE, Dunham MJ, Zheng Y. 2009. Telomere behavior in a hybrid yeast. Cell Res 19: 910-912.
-
(2009)
Cell Res
, vol.19
, pp. 910-912
-
-
Martin, O.C.1
DeSevo, C.G.2
Guo, B.Z.3
Koshland, D.E.4
Dunham, M.J.5
Zheng, Y.6
-
34
-
-
61849083545
-
The temporal program of chromosome replication: Genomewide replication in clb5Δ Saccharomyces cerevisiae
-
McCune HJ, Danielson LS, Alvino GM, Collingwood D, Delrow JJ, Fangman WL, Brewer BJ, Raghuraman MK. 2008. The temporal program of chromosome replication: Genomewide replication in clb5Δ Saccharomyces cerevisiae. Genetics 180: 1833-1847.
-
(2008)
Genetics
, vol.180
, pp. 1833-1847
-
-
McCune, H.J.1
Danielson, L.S.2
Alvino, G.M.3
Collingwood, D.4
Delrow, J.J.5
Fangman, W.L.6
Brewer, B.J.7
Raghuraman, M.K.8
-
35
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Mechali M. 2010. Eukaryotic DNA replication origins: Many choices for appropriate answers. Nat Rev Mol Cell Biol 11: 728-738.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Mechali, M.1
-
36
-
-
77954526472
-
The conserved bromoadjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin
-
Müller P, Park S, Shor E, Huebert DJ, Warren CL, Ansari AZ, Weinreich M, Eaton ML, MacAlpine DM, Fox CA. 2010. The conserved bromoadjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin. Genes Dev 24: 1418-1433.
-
(2010)
Genes Dev
, vol.24
, pp. 1418-1433
-
-
Müller, P.1
Park, S.2
Shor, E.3
Huebert, D.J.4
Warren, C.L.5
Ansari, A.Z.6
Weinreich, M.7
Eaton, M.L.8
MacAlpine, D.M.9
Fox, C.A.10
-
37
-
-
68349159310
-
Detection of replication origins using comparative genomics and recombinational ARS assay
-
Nieduszynski CA, Donaldson AD. 2009. Detection of replication origins using comparative genomics and recombinational ARS assay. Methods Mol Biol 521: 295-313.
-
(2009)
Methods Mol Biol
, vol.521
, pp. 295-313
-
-
Nieduszynski, C.A.1
Donaldson, A.D.2
-
38
-
-
80052048400
-
From sequence to function: Insights from natural variation in budding yeasts
-
Nieduszynski CA, Liti G. 2011. From sequence to function: Insights from natural variation in budding yeasts. Biochim Biophys Acta 1810: 959-966.
-
(2011)
Biochim Biophys Acta
, vol.1810
, pp. 959-966
-
-
Nieduszynski, C.A.1
Liti, G.2
-
39
-
-
17844364938
-
The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription
-
DOI 10.1093/nar/gki539
-
Nieduszynski CA, Blow JJ, Donaldson AD. 2005. The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription. Nucleic Acids Res 33: 2410-2420. (Pubitemid 41511260)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.8
, pp. 2410-2420
-
-
Nieduszynski, C.A.1
Blow, J.J.2
Donaldson, A.D.3
-
40
-
-
33746101049
-
Genome-wide identification of replication origins in yeast by comparative genomics
-
DOI 10.1101/gad.385306
-
Nieduszynski CA, Knox Y, Donaldson AD. 2006. Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20: 1874-1879. (Pubitemid 44079324)
-
(2006)
Genes and Development
, vol.20
, Issue.14
, pp. 1874-1879
-
-
Nieduszynski, C.A.1
Knox, Y.2
Donaldson, A.D.3
-
41
-
-
33846110760
-
OriDB: A DNA replication origin database
-
DOI 10.1093/nar/gkl758
-
Nieduszynski CA, Hiraga S, Ak P, Benham CJ, Donaldson AD. 2007. OriDB: A DNA replication origin database. Nucleic Acids Res 35: D40-D46. (Pubitemid 46056167)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Nieduszynski, C.A.1
Hiraga, S.-I.2
Ak, P.3
Benham, C.J.4
Donaldson, A.D.5
-
42
-
-
68349134692
-
Unusual composition of a yeast chromosome arm is associated with its delayed replication
-
Payen C, Fischer G, Marck C, Proux C, Sherman DJ, Coppee JY, Johnston M, Dujon B, Neuveglise C. 2009. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res 19: 1710-1721.
-
(2009)
Genome Res
, vol.19
, pp. 1710-1721
-
-
Payen, C.1
Fischer, G.2
Marck, C.3
Proux, C.4
Sherman, D.J.5
Coppee, J.Y.6
Johnston, M.7
Dujon, B.8
Neuveglise, C.9
-
43
-
-
84863643914
-
Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae
-
doi: 10.1371/journal.pgen.1002677
-
Pohl TJ, Brewer BJ, Raghuraman MK. 2012. Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae. PLoS Genet 8: e1002677. doi: 10.1371/journal.pgen.1002677.
-
(2012)
PLoS Genet
, vol.8
-
-
Pohl, T.J.1
Brewer, B.J.2
Raghuraman, M.K.3
-
44
-
-
0035812808
-
Replication dynamics of the yeast genome
-
DOI 10.1126/science.294.5540.115
-
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. 2001. Replication dynamics of the yeast genome. Science 294: 115-121. (Pubitemid 32952958)
-
(2001)
Science
, vol.294
, Issue.5540
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
45
-
-
40549108563
-
Cell cycle regulation of DNA replication
-
Sclafani RA, Holzen TM. 2007. Cell cycle regulation of DNA replication. Annu Rev Genet 41: 237-280.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 237-280
-
-
Sclafani, R.A.1
Holzen, T.M.2
-
46
-
-
0027261235
-
Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae
-
Shirahige K, Iwasaki T, Rashid MB, Ogasawara N, Yoshikawa H. 1993. Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae. Mol Cell Biol 13: 5043-5056. (Pubitemid 23220408)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.8
, pp. 5043-5056
-
-
Shirahige, K.1
Iwasaki, T.2
Rashid, M.B.3
Ogasawara, N.4
Yoshikawa, H.5
-
47
-
-
74249093900
-
The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication
-
doi: 10.1371/journal.pgen.1000755
-
Shor E, Warren CL, Tietjen J, Hou Z, Müller U, Alborelli I, Gohard FH, Yemm AI, Borisov L, Broach JR, et al. 2009. The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication. PLoS Genet 5: e1000755. doi: 10.1371/journal.pgen.1000755.
-
(2009)
PLoS Genet
, vol.5
-
-
Shor, E.1
Warren, C.L.2
Tietjen, J.3
Hou, Z.4
Müller, U.5
Alborelli, I.6
Gohard, F.H.7
Yemm, A.I.8
Borisov, L.9
Broach, J.R.10
-
48
-
-
84862163023
-
OriDB, the DNA replication origin database updated and extended
-
Siow CC, Nieduszynska SR, Müller CA, Nieduszynski CA. 2011. OriDB, the DNA replication origin database updated and extended. Nucleic Acids Res 40: D682-D686.
-
(2011)
Nucleic Acids Res
, vol.40
-
-
Siow, C.C.1
Nieduszynska, S.R.2
Müller, C.A.3
Nieduszynski, C.A.4
-
49
-
-
63449141981
-
Human mutation rate associated with DNA replication timing
-
Stamatoyannopoulos JA, Adzhubei I, Thurman RE, Kryukov GV, Mirkin SM, Sunyaev SR. 2009. Human mutation rate associated with DNA replication timing. Nat Genet 41: 393-395.
-
(2009)
Nat Genet
, vol.41
, pp. 393-395
-
-
Stamatoyannopoulos, J.A.1
Adzhubei, I.2
Thurman, R.E.3
Kryukov, G.V.4
Mirkin, S.M.5
Sunyaev, S.R.6
-
50
-
-
84155171119
-
Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing
-
Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H. 2011. Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr Biol 21: 2055-2063.
-
(2011)
Curr Biol
, vol.21
, pp. 2055-2063
-
-
Tanaka, S.1
Nakato, R.2
Katou, Y.3
Shirahige, K.4
Araki, H.5
-
51
-
-
0032807435
-
DNA sequence and functional analysis of homologous ARS elements of Saccharomyces cerevisiae and S. carlsbergensis
-
Theis JF, Yang C, Schaefer CB, Newlon CS. 1999. DNA sequence and functional analysis of homologous ARS elements of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152: 943-952. (Pubitemid 29330895)
-
(1999)
Genetics
, vol.152
, Issue.3
, pp. 943-952
-
-
Theis, J.F.1
Yang, C.2
Schaefer, C.B.3
Newlon, C.S.4
-
52
-
-
77955045449
-
The role of nucleosome positioning in the evolution of gene regulation
-
doi: 10.1371/journal.pbio.1000414
-
Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. 2010. The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8: e1000414. doi: 10.1371/journal.pbio.1000414.
-
(2010)
PLoS Biol
, vol.8
-
-
Tsankov, A.M.1
Thompson, D.A.2
Socha, A.3
Regev, A.4
Rando, O.J.5
-
53
-
-
0024297539
-
The ease of DNA unwinding as a determinant of initiation at yeast replication origins
-
Umek RM, Kowalski D. 1988. The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell 52: 559-567.
-
(1988)
Cell
, vol.52
, pp. 559-567
-
-
Umek, R.M.1
Kowalski, D.2
-
54
-
-
79951493843
-
A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
-
Venters BJ, Wachi S, Mavrich TN, Andersen BE, Jena P, Sinnamon AJ, Jain P, Rolleri NS, Jiang C, Hemeryck-Walsh C, et al. 2011. A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41: 480-492.
-
(2011)
Mol Cell
, vol.41
, pp. 480-492
-
-
Venters, B.J.1
Wachi, S.2
Mavrich, T.N.3
Andersen, B.E.4
Jena, P.5
Sinnamon, A.J.6
Jain, P.7
Rolleri, N.S.8
Jiang, C.9
Hemeryck-Walsh, C.10
-
55
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
DOI 10.1016/S1097-2765(02)00702-5
-
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. 2002. Histone acetylation regulates the time of replication origin firing. Mol Cell 10: 1223-1233. (Pubitemid 35453838)
-
(2002)
Molecular Cell
, vol.10
, Issue.5
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
56
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. cerevisae: High-resolution mapping of replication origins
-
DOI 10.1126/science.1066101
-
Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM. 2001. Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins. Science 294: 2357-2360. (Pubitemid 33140560)
-
(2001)
Science
, vol.294
, Issue.5550
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
57
-
-
34547236841
-
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae
-
doi: 10.1186/1971-2164-7-276
-
Xu W, Aparicio JG, Aparicio OM, Tavare S. 2006. Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7: 276. doi: 10.1186/1971-2164-7-276.
-
(2006)
BMC Genomics
, vol.7
, pp. 276
-
-
Xu, W.1
Aparicio, J.G.2
Aparicio, O.M.3
Tavare, S.4
-
58
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
DOI 10.1046/j.1365-2443.2002.00559.x
-
Yabuki N, Terashima H, Kitada K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789. (Pubitemid 34947082)
-
(2002)
Genes to Cells
, vol.7
, Issue.8
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
59
-
-
0031261584
-
The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI
-
Yamashita M, Hori Y, Shinomiya T, Obuse C, Tsurimoto T, Yoshikawa H, Shirahige K. 1997. The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI. Genes Cells 2: 655-666.
-
(1997)
Genes Cells
, vol.2
, pp. 655-666
-
-
Yamashita, M.1
Hori, Y.2
Shinomiya, T.3
Obuse, C.4
Tsurimoto, T.5
Yoshikawa, H.6
Shirahige, K.7
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