-
1
-
-
34548789595
-
Replication in hydroxyurea: It's a matter of time
-
DOI 10.1128/MCB.00719-07
-
Alvino GM, Collingwood D, Murphy JM, Delrow J, Brewer BJ, Raghuraman MK. 2007. Replication in hydroxyurea: It's a matter of time. Mol Cell Biol 27: 6396-6406. (Pubitemid 47435746)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.18
, pp. 6396-6406
-
-
Alvino, G.M.1
Collingwood, D.2
Murphy, J.M.3
Delrow, J.4
Brewer, B.J.5
Raghuraman, M.K.6
-
2
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae
-
DOI 10.1128/MCB.24.11.4769-4780.2004
-
Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM. 2004. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol 24: 4769-4780. (Pubitemid 38668043)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.11
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
3
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey TL, Gribskov M. 1998. Combining evidence using p-values: Application to sequence homology searches. Bioinformatics 14: 48-54. (Pubitemid 28395676)
-
(1998)
Bioinformatics
, vol.14
, Issue.1
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
5
-
-
0028949675
-
Eukaryotic replicators and associated protein complexes
-
Bell SP. 1995. Eukaryotic replicators and associated protein complexes. Curr Opin Genet Dev 5: 162-167.
-
(1995)
Curr Opin Genet Dev
, vol.5
, pp. 162-167
-
-
Bell, S.P.1
-
6
-
-
0035997368
-
DNA replication in eukaryotic cells
-
DOI 10.1146/annurev.biochem.71.110601.135425
-
Bell SP, Dutta A. 2002. DNA replication in eukaryotic cells. Annu Rev Biochem 71: 333-374. (Pubitemid 34800224)
-
(2002)
Annual Review of Biochemistry
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
7
-
-
0001225414
-
Fungal molecular evolution: Gene trees and geologic time
-
ed. D McLaughlin, E McLaughlin, Springer-Verlag, Berlin
-
Berbee ML, Taylor JW. 2001. Fungal molecular evolution: Gene trees and geologic time. In The Mycota: Systematics and evolution (ed. D McLaughlin, E McLaughlin), pp. 229-245. Springer-Verlag, Berlin.
-
(2001)
The Mycota: Systematics and Evolution
, pp. 229-245
-
-
Berbee, M.L.1
Taylor, J.W.2
-
8
-
-
78049415820
-
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
-
doi: 10.1371/journal.pgen.1001092
-
Berbenetz NM, Nislow C, Brown GW. 2010. Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet 6: e1001092. doi: 10.1371/journal.pgen.1001092.
-
(2010)
PLoS Genet
, vol.6
-
-
Berbenetz, N.M.1
Nislow, C.2
Brown, G.W.3
-
9
-
-
20344396122
-
Preventing re-replication of chromosomal DNA
-
DOI 10.1038/nrm1663
-
Blow JJ, Dutta A. 2005. Preventing re-replication of chromosomal DNA. Nat Rev Mol Cell Biol 6: 476-486. (Pubitemid 40780559)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.6
, pp. 476-486
-
-
Blow, J.J.1
Dutta, A.2
-
10
-
-
79961170861
-
How dormant origins promote complete genome replication
-
Blow JJ, Ge XQ, Jackson DA. 2011. How dormant origins promote complete genome replication. Trends Biochem Sci 36: 405-414.
-
(2011)
Trends Biochem Sci
, vol.36
, pp. 405-414
-
-
Blow, J.J.1
Ge, X.Q.2
Jackson, D.A.3
-
11
-
-
12344269924
-
GO::TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
DOI 10.1093/bioinformatics/bth456
-
Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM, Sherlock G. 2004. GO:TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20: 3710-3715. (Pubitemid 40136825)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
12
-
-
3042717854
-
Prediction of Saccharomyces cerevisiae replication origins
-
Breier AM, Chatterji S, Cozzarelli NR. 2004. Prediction of Saccharomyces cerevisiae replication origins. Genome Biol 5: R22. http://genomebiology.com/ 2004/5/4/R22.
-
(2004)
Genome Biol
, vol.5
-
-
Breier, A.M.1
Chatterji, S.2
Cozzarelli, N.R.3
-
13
-
-
79953747267
-
Origin-dependent inverted-repeat amplification: A replication-based model for generating palindromic amplicons
-
doi: 10.1371/journal.pgen.1002016
-
Brewer BJ, Payen C, Raghuraman MK, Dunham MJ. 2011. Origin-dependent inverted-repeat amplification: A replication-based model for generating palindromic amplicons. PLoS Genet 7: e1002016. doi: 10.1371/journal.pgen. 1002016.
-
(2011)
PLoS Genet
, vol.7
-
-
Brewer, B.J.1
Payen, C.2
Raghuraman, M.K.3
Dunham, M.J.4
-
14
-
-
0031904230
-
Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
-
Brown CJ, Todd KM, Rosenzweig RF. 1998. Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol 15: 931-942. (Pubitemid 28364447)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.8
, pp. 931-942
-
-
Brown, C.J.1
Todd, K.M.2
Rosenzweig, R.F.3
-
15
-
-
25844471721
-
The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
-
DOI 10.1101/gr.3672305
-
Byrne KP, Wolfe KH. 2005. The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15: 1456-1461. (Pubitemid 41400914)
-
(2005)
Genome Research
, vol.15
, Issue.10
, pp. 1456-1461
-
-
Byrne, K.P.1
Wolfe, K.H.2
-
16
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S. 2009. AmiGO: Online access to ontology and annotation data. Bioinformatics 25: 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
17
-
-
49449103939
-
Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conservedWTWsequence within the origin recognition complex binding site
-
Chang F, Theis JF, Miller J, Nieduszynski CA, Newlon CS, Weinreich M. 2008. Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conservedWTWsequence within the origin recognition complex binding site. Mol Cell Biol 28: 5071-5081.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5071-5081
-
-
Chang, F.1
Theis, J.F.2
Miller, J.3
Nieduszynski, C.A.4
Newlon, C.S.5
Weinreich, M.6
-
18
-
-
80055087240
-
High-resolution analysis of four efficient yeast replication origins reveals new insights into the ORC and putativeMCMbinding elements
-
Chang F, May CD, Hoggard T, Miller J, Fox CA, Weinreich M. 2011. High-resolution analysis of four efficient yeast replication origins reveals new insights into the ORC and putativeMCMbinding elements. Nucleic Acids Res 39: 6523-6535.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6523-6535
-
-
Chang, F.1
May, C.D.2
Hoggard, T.3
Miller, J.4
Fox, C.A.5
Weinreich, M.6
-
19
-
-
0026500678
-
Characterization of a circular plasmid from the yeast Kluyveromyces waltii
-
Chen XJ, Cong YS, Wesolowski-Louvel M, Li YY, Fukuhara H. 1992. Characterization of a circular plasmid from the yeast Kluyveromyces waltii. J Gen Microbiol 138: 337-345.
-
(1992)
J Gen Microbiol
, vol.138
, pp. 337-345
-
-
Chen, X.J.1
Cong, Y.S.2
Wesolowski-Louvel, M.3
Li, Y.Y.4
Fukuhara, H.5
-
20
-
-
34547611439
-
Increased glycolytic flux as an outcome of whole-genome duplication in yeast
-
doi: 10.1038/msb4100170
-
Conant GC, Wolfe KH. 2007. Increased glycolytic flux as an outcome of whole-genome duplication in yeast. Mol Syst Biol 3: 129. doi: 10.1038/msb4100170.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 129
-
-
Conant, G.C.1
Wolfe, K.H.2
-
21
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks GE, Hon G, Chandonia JM, Brenner SE. 2004.WebLogo: A sequence logo generator. Genome Res 14: 1188-1190. (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
22
-
-
34347346075
-
Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements
-
DOI 10.1128/MCB.01246-06
-
Dershowitz A, Snyder M, Sbia M, Skurnick JH, Ong LY, Newlon CS. 2007. Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements. Mol Cell Biol 27: 4652-4663. (Pubitemid 47016120)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.13
, pp. 4652-4663
-
-
Dershowitz, A.1
Snyder, M.2
Sbia, M.3
Skurnick, J.H.4
Ong, L.Y.5
Newlon, C.S.6
-
24
-
-
78751510883
-
Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii
-
Di Rienzi SC, Lindstrom KC, Lancaster R, Rolczynski L, Raghuraman MK, Brewer BJ. 2011. Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii. Yeast 28: 137-151.
-
(2011)
Yeast
, vol.28
, pp. 137-151
-
-
Di Rienzi, S.C.1
Lindstrom, K.C.2
Lancaster, R.3
Rolczynski, L.4
Raghuraman, M.K.5
Brewer, B.J.6
-
25
-
-
0028147136
-
Eukaryotic replication origins: Control in space and time
-
DOI 10.1016/0968-0004(94)90070-1
-
Diller JD, Raghuraman MK. 1994. Eukaryotic replication origins: Control in space and time. Trends Biochem Sci 19: 320-325. (Pubitemid 24259983)
-
(1994)
Trends in Biochemical Sciences
, vol.19
, Issue.8
, pp. 320-325
-
-
Diller, J.D.1
Raghuraman, M.K.2
-
26
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
DOI 10.1073/pnas.242624799
-
Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, Botstein D. 2002. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc Natl Acad Sci 99: 16144-16149. (Pubitemid 35462763)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.25
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
Botstein, D.7
-
27
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24: 748-753.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
MacAlpine, D.M.5
-
28
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ. 2006. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-155.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
29
-
-
33845676749
-
Mapping yeast origins of replication via single-stranded DNA detection
-
DOI 10.1016/j.ymeth.2006.07.023, PII S1046202306001721, Methods in Cell Cycle Research
-
Feng W, Raghuraman MK, Brewer BJ. 2007. Mapping yeast origins of replication via single-stranded DNA detection. Methods 41: 151-157. (Pubitemid 44960830)
-
(2007)
Methods
, vol.41
, Issue.2
, pp. 151-157
-
-
Feng, W.1
Raghuraman, M.K.2
Brewer, B.J.3
-
30
-
-
0026571672
-
A position effect on the time of replication origin activation in yeast
-
Ferguson BM, Fangman WL. 1992. A position effect on the time of replication origin activation in yeast. Cell 68: 333-339.
-
(1992)
Cell
, vol.68
, pp. 333-339
-
-
Ferguson, B.M.1
Fangman, W.L.2
-
31
-
-
0025756992
-
A yeast origin of replication is activated late in S phase
-
Ferguson BM, Brewer BJ, Reynolds AE, Fangman WL. 1991. A yeast origin of replication is activated late in S phase. Cell 65: 507-515. (Pubitemid 121002060)
-
(1991)
Cell
, vol.65
, Issue.3
, pp. 507-515
-
-
Ferguson, B.M.1
Brewer, B.J.2
Reynolds, A.E.3
Fangman, W.L.4
-
32
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
doi: 10.1371/journal.pcbi.1000216
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E. 2008. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216. doi: 10.1371/journal.pcbi.1000216.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
Lubling, Y.6
Widom, J.7
Segal, E.8
-
33
-
-
67149106149
-
Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
-
doi: 10.1371/journal.pgen.1000485
-
Gordon JL, Byrne KP,Wolfe KH. 2009. Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet 5: e1000485. doi: 10.1371/journal.pgen.1000485.
-
(2009)
PLoS Genet
, vol.5
-
-
Gordon, J.L.1
Byrne, K.P.2
Wolfe, K.H.3
-
34
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
doi: 10.1371/journal.pgen.1000303
-
Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ. 2008. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet 4: e1000303. doi: 10.1371/journal.pgen.1000303.
-
(2008)
PLoS Genet
, vol.4
-
-
Gresham, D.1
Desai, M.M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
DeSevo, C.G.7
Botstein, D.8
Dunham, M.J.9
-
35
-
-
61849184077
-
The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus
-
HayashiMT, Takahashi TS, Nakagawa T, Nakayama J, Masukata H. 2009. The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus. Nat Cell Biol 11: 357-362.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 357-362
-
-
Hayashi, M.T.1
Takahashi, T.S.2
Nakagawa, T.3
Nakayama, J.4
Masukata, H.5
-
37
-
-
56749107039
-
Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
-
Kao KC, Sherlock G. 2008.Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae . Nat Genet 40: 1499-1504.
-
(2008)
Nat Genet
, vol.40
, pp. 1499-1504
-
-
Kao, K.C.1
Sherlock, G.2
-
38
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, et al. 2009. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458: 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
LeProust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
-
39
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
DOI 10.1038/nature02424
-
Kellis M, Birren BW, Lander ES. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624. (Pubitemid 38524797)
-
(2004)
Nature
, vol.428
, Issue.6983
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
40
-
-
65449160972
-
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott SR, Viggiani CJ, Tavare S, Aparicio OM. 2009. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev 23: 1077-1090.
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.R.1
Viggiani, C.J.2
Tavare, S.3
Aparicio, O.M.4
-
41
-
-
77957337127
-
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase
-
doi: 10.1371/journal.pgen.1001068
-
Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. 2010. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet 6: e1001068. doi: 10.1371/journal.pgen.1001068.
-
(2010)
PLoS Genet
, vol.6
-
-
Koren, A.1
Tsai, H.J.2
Tirosh, I.3
Burrack, L.S.4
Barkai, N.5
Berman, J.6
-
42
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi: 10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
43
-
-
0030712877
-
Architecture of the yeast origin recognition complex bound to origins of DNA replication
-
Lee DG, Bell SP. 1997. Architecture of the yeast origin recognition complex bound to origins of DNA replication. Mol Cell Biol 17: 7159-7168. (Pubitemid 27505946)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.12
, pp. 7159-7168
-
-
Lee, D.G.1
Bell, S.P.2
-
44
-
-
77953208022
-
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
-
doi: 10.1371/journal.pgen.1000946
-
Liachko I, Bhaskar A, Lee C, Chung SC, Tye BK, Keich U. 2010. A comprehensive genome-wide map of autonomously replicating sequences in a naive genome. PLoS Genet 6: e1000946. doi: 10.1371/journal.pgen.1000946.
-
(2010)
PLoS Genet
, vol.6
-
-
Liachko, I.1
Bhaskar, A.2
Lee, C.3
Chung, S.C.4
Tye, B.K.5
Keich, U.6
-
45
-
-
84455173851
-
Novel features of ARS selection in budding yeast Lachancea kluyveri
-
doi: 10.1186/1471-2164-12-633
-
Liachko I, Tanaka E, Cox K, Chung SC, Yang L, Seher A, Hallas L, Cha E, Kang G, Pace H, et al. 2011. Novel features of ARS selection in budding yeast Lachancea kluyveri. BMC Genomics 12: 633. doi: 10.1186/1471-2164-12-633.
-
(2011)
BMC Genomics
, vol.12
, pp. 633
-
-
Liachko, I.1
Tanaka, E.2
Cox, K.3
Chung, S.C.4
Yang, L.5
Seher, A.6
Hallas, L.7
Cha, E.8
Kang, G.9
Pace, H.10
-
46
-
-
0023150161
-
Role of transcriptional and posttranscriptional regulation in expression of histone genes in Saccharomyces cerevisiae
-
Lycan DE, Osley MA, Hereford LM. 1987. Role of transcriptional and posttranscriptional regulation in expression of histone genes in Saccharomyces cerevisiae. Mol Cell Biol 7: 614-621. (Pubitemid 17004524)
-
(1987)
Molecular and Cellular Biology
, vol.7
, Issue.2
, pp. 614-621
-
-
Lycan, D.E.1
Osley, M.A.2
Hereford, L.M.3
-
47
-
-
23444434202
-
A genomic view of eukaryotic DNA replication
-
MacAlpine DM, Bell SP. 2005. A genomic view of eukaryotic DNA replication. Chromosome Res 13: 309-326.
-
(2005)
Chromosome Res
, vol.13
, pp. 309-326
-
-
MacAlpine, D.M.1
Bell, S.P.2
-
48
-
-
0026508417
-
A yeast chromosomal origin of DNA replication defined by multiple functional elements
-
Marahrens Y, Stillman B. 1992. A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 255: 817-823.
-
(1992)
Science
, vol.255
, pp. 817-823
-
-
Marahrens, Y.1
Stillman, B.2
-
49
-
-
77953632048
-
Eukaryotic chromosome DNA replication: Where, when, and how?
-
MasaiH,Matsumoto S, You Z, Yoshizawa-Sugata N, OdaM. 2010. Eukaryotic chromosome DNA replication: Where, when, and how? Annu Rev Biochem 79: 89-130.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 89-130
-
-
Masai, H.1
Matsumoto, S.2
You, Z.3
Yoshizawa-Sugata, N.4
Oda, M.5
-
50
-
-
0024285032
-
Time of replication of yeast centromeres and telomeres
-
McCarroll RM, Fangman WL. 1988. Time of replication of yeast centromeres and telomeres. Cell 54: 505-513.
-
(1988)
Cell
, vol.54
, pp. 505-513
-
-
McCarroll, R.M.1
Fangman, W.L.2
-
51
-
-
61849083545
-
The temporal program of chromosome replication: Genomewide replication in clb5Δ Saccharomyces cerevisiae
-
McCune HJ, Danielson LS, Alvino GM, Collingwood D, Delrow JJ, Fangman WL, Brewer BJ, Raghuraman MK. 2008. The temporal program of chromosome replication: Genomewide replication in clb5Δ Saccharomyces cerevisiae. Genetics 180: 1833-1847.
-
(2008)
Genetics
, vol.180
, pp. 1833-1847
-
-
McCune, H.J.1
Danielson, L.S.2
Alvino, G.M.3
Collingwood, D.4
Delrow, J.J.5
Fangman, W.L.6
Brewer, B.J.7
Raghuraman, M.K.8
-
52
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Mechali M. 2010. Eukaryotic DNA replication origins: Many choices for appropriate answers. Nat Rev Mol Cell Biol 11: 728-738.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Mechali, M.1
-
53
-
-
33746101049
-
Genome-wide identification of replication origins in yeast by comparative genomics
-
DOI 10.1101/gad.385306
-
Nieduszynski CA, Knox Y, Donaldson AD. 2006. Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20: 1874-1879. (Pubitemid 44079324)
-
(2006)
Genes and Development
, vol.20
, Issue.14
, pp. 1874-1879
-
-
Nieduszynski, C.A.1
Knox, Y.2
Donaldson, A.D.3
-
54
-
-
33846110760
-
OriDB: A DNA replication origin database
-
DOI 10.1093/nar/gkl758
-
Nieduszynski CA, Hiraga S, Ak P, Benham CJ, Donaldson AD. 2007. OriDB: A DNA replication origin database. Nucleic Acids Res 35: D40-D46. (Pubitemid 46056167)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Nieduszynski, C.A.1
Hiraga, S.-I.2
Ak, P.3
Benham, C.J.4
Donaldson, A.D.5
-
55
-
-
73149099424
-
Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression
-
doi: 10.1038/msb.2009.70
-
Omberg L, Meyerson JR, Kobayashi K, Drury LS, Diffley JF, Alter O. 2009. Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression. Mol Syst Biol 5: 312. doi: 10.1038/msb.2009.70.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 312
-
-
Omberg, L.1
Meyerson, J.R.2
Kobayashi, K.3
Drury, L.S.4
Diffley, J.F.5
Alter, O.6
-
56
-
-
84863643914
-
Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae
-
doi: 10.1371/journal.pgen.1002677
-
Pohl TJ, Brewer BJ, Raghuraman MK. 2012. Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae . PLoS Genet 8: e1002677. doi: 10.1371/journal.pgen.1002677.
-
(2012)
PLoS Genet
, vol.8
-
-
Pohl, T.J.1
Brewer, B.J.2
Raghuraman, M.K.3
-
57
-
-
0035812808
-
Replication dynamics of the yeast genome
-
DOI 10.1126/science.294.5540.115
-
Raghuraman MK,Winzeler EA, Collingwood D, Hunt S,Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. 2001. Replication dynamics of the yeast genome. Science 294: 115-121. (Pubitemid 32952958)
-
(2001)
Science
, vol.294
, Issue.5540
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
58
-
-
0028928194
-
The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators
-
Rao H, Stillman B. 1995. The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc Natl Acad Sci 92: 2224-2228.
-
(1995)
Proc Natl Acad Sci
, vol.92
, pp. 2224-2228
-
-
Rao, H.1
Stillman, B.2
-
59
-
-
0029000683
-
Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC
-
Rowley A, Cocker JH, Harwood J, Diffley JF. 1995. Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC. EMBO J 14: 2631-2641.
-
(1995)
EMBO J
, vol.14
, pp. 2631-2641
-
-
Rowley, A.1
Cocker, J.H.2
Harwood, J.3
Diffley, J.F.4
-
60
-
-
40549108563
-
Cell cycle regulation of DNA replication
-
Sclafani RA, Holzen TM. 2007. Cell cycle regulation of DNA replication. Annu Rev Genet 41: 237-280.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 237-280
-
-
Sclafani, R.A.1
Holzen, T.M.2
-
61
-
-
0346873031
-
Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe
-
DOI 10.1038/sj.embor.7400008
-
Segurado M, de Luis A, Antequera F. 2003. Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep 4: 1048-1053. (Pubitemid 37527422)
-
(2003)
EMBO Reports
, vol.4
, Issue.11
, pp. 1048-1053
-
-
Segurado, M.1
De Luis, A.2
Antequera, F.3
-
62
-
-
0033556028
-
Telomeric chromatin modulates replication timing near chromosome ends
-
Stevenson JB, Gottschling DE. 1999. Telomeric chromatin modulates replication timing near chromosome ends. Genes Dev 13: 146-151. (Pubitemid 29061944)
-
(1999)
Genes and Development
, vol.13
, Issue.2
, pp. 146-151
-
-
Stevenson, J.B.1
Gottschling, D.E.2
-
63
-
-
0018671664
-
Isolation and characterisation of a yeast chromosomal replicator
-
DOI 10.1038/282039a0
-
Stinchcomb DT, Struhl K, Davis RW. 1979. Isolation and characterisation of a yeast chromosomal replicator. Nature 282: 39-43. (Pubitemid 10250104)
-
(1979)
Nature
, vol.282
, Issue.5734
, pp. 39-43
-
-
Stinchcomb, D.T.1
Struhl, K.2
Davis, R.W.3
-
65
-
-
79951468998
-
Prevention of DNA re-replication in eukaryotic cells
-
Truong LN, Wu X. 2011. Prevention of DNA re-replication in eukaryotic cells. J Mol Cell Biol 3: 13-22.
-
(2011)
J Mol Cell Biol
, vol.3
, pp. 13-22
-
-
Truong, L.N.1
Wu, X.2
-
66
-
-
77955045449
-
The role of nucleosome positioning in the evolution of gene regulation
-
doi: 10.1371/journal.pbio.1000414
-
Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. 2010. The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8: e1000414. doi: 10.1371/journal.pbio.1000414.
-
(2010)
PLoS Biol
, vol.8
-
-
Tsankov, A.M.1
Thompson, D.A.2
Socha, A.3
Regev, A.4
Rando, O.J.5
-
67
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
DOI 10.1016/S1097-2765(02)00702-5
-
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. 2002. Histone acetylation regulates the time of replication origin firing. Mol Cell 10: 1223-1233. (Pubitemid 35453838)
-
(2002)
Molecular Cell
, vol.10
, Issue.5
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
68
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
DOI 10.1038/42711
-
Wolfe KH, Shields DC. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713. (Pubitemid 27270611)
-
(1997)
Nature
, vol.387
, Issue.6634
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
69
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. cerevisae: High-resolution mapping of replication origins
-
DOI 10.1126/science.1066101
-
Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM. 2001. Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins. Science 294: 2357-2360. (Pubitemid 33140560)
-
(2001)
Science
, vol.294
, Issue.5550
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
70
-
-
0032788462
-
Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergensis
-
Yang C, Theis JF, Newlon CS. 1999. Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152: 933-941. (Pubitemid 29330894)
-
(1999)
Genetics
, vol.152
, Issue.3
, pp. 933-941
-
-
Yang, C.1
Theis, J.F.2
Newlon, C.S.3
-
71
-
-
67349272585
-
The impact of nucleosome positioning on the organization of replication origins in eukaryotes
-
Yin S, DengW, Hu L, Kong X. 2009. The impact of nucleosome positioning on the organization of replication origins in eukaryotes. Biochem Biophys Res Commun 385: 363-368.
-
(2009)
Biochem Biophys Res Commun
, vol.385
, pp. 363-368
-
-
Yin, S.1
Deng, W.2
Hu, L.3
Kong, X.4
-
72
-
-
22744432660
-
Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
-
DOI 10.1126/science.1112178
-
Yuan GC, Liu YJ, Dion MF, Slack MD,Wu LF, Altschuler SJ, Rando OJ. 2005. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630. (Pubitemid 41033649)
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 626-630
-
-
Yuan, G.-C.1
Liu, Y.-J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
73
-
-
0037019025
-
Control of replication timing by a transcriptional silencer
-
DOI 10.1016/S0960-9822(02)00871-0, PII S0960982202008710
-
Zappulla DC, Sternglanz R, Leatherwood J. 2002. Control of replication timing by a transcriptional silencer. Curr Biol 12: 869-875. (Pubitemid 34689220)
-
(2002)
Current Biology
, vol.12
, Issue.11
, pp. 869-875
-
-
Zappulla, D.C.1
Sternglanz, R.2
Leatherwood, J.3
|