-
1
-
-
34447565003
-
Replication in context: Dynamic regulation of DNA replication patterns in metazoans
-
Aladjem MI. 2007. Replication in context: Dynamic regulation of DNA replication patterns in metazoans. Nat Rev Genet 8: 588-600
-
(2007)
Nat Rev Genet
, vol.8
, pp. 588-600
-
-
Aladjem, M.I.1
-
2
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae
-
Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM. 2004. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol 24: 4769-4780
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
3
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
doi: 10.1093/nar/gkp335
-
Bailey TL, Bodén M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. 2009. MEME SUITE: Tools for motif discovery and searching. Nucleic Acids Res 37: W202-W208. doi: 10.1093/nar/gkp335.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
Bodén, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
4
-
-
35848962284
-
Transcription and RNAi in heterochromatic gene silencing
-
Buhler M, Moazed D. 2007. Transcription and RNAi in heterochromatic gene silencing. Nat Struct Mol Biol 14: 1041-1048
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1041-1048
-
-
Buhler, M.1
Moazed, D.2
-
5
-
-
0031038170
-
Regulation of telomere length and function by a Myb-domain protein in fission yeast
-
Cooper JP, Nimmo ER, Allshire RC, Cech TR. 1997. Regulation of telomere length and function by a Myb-domain protein in fission yeast. Nature 385: 744-747
-
(1997)
Nature
, vol.385
, pp. 744-747
-
-
Cooper, J.P.1
Nimmo, E.R.2
Allshire, R.C.3
Cech, T.R.4
-
6
-
-
0036791764
-
Ku complex controls the replication time of DNA in telomere regions
-
Cosgrove AJ, Nieduszynski CA, Donaldson AD. 2002. Ku complex controls the replication time of DNA in telomere regions. Genes Dev 16: 2485-2490
-
(2002)
Genes Dev
, vol.16
, pp. 2485-2490
-
-
Cosgrove, A.J.1
Nieduszynski, C.A.2
Donaldson, A.D.3
-
7
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova DS, Gilbert DM. 1999. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol Cell 4: 983-993
-
(1999)
Mol Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
8
-
-
77949576511
-
Rmat-an R/Bioconductor package for analyzing ChIP-chip experiments
-
Droit A, Cheung C, Gottardo R. 2010. rMAT-an R/Bioconductor package for analyzing ChIP-chip experiments. Bioinformatics 26: 678-679
-
(2010)
Bioinformatics
, vol.26
, pp. 678-679
-
-
Droit, A.1
Cheung, C.2
Gottardo, R.3
-
9
-
-
0026623241
-
A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation
-
Hardy CF, Sussel L, Shore D. 1992. A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation. Genes Dev 6: 801-814
-
(1992)
Genes Dev
, vol.6
, pp. 801-814
-
-
Hardy, C.F.1
Sussel, L.2
Shore, D.3
-
10
-
-
79958075422
-
Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast
-
Hayano M, Kanoh Y, Matsumoto S, Masai H. 2011. Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast. Mol Cell Biol 31: 2380-2391
-
(2011)
Mol Cell Biol
, vol.31
, pp. 2380-2391
-
-
Hayano, M.1
Kanoh, Y.2
Matsumoto, S.3
Masai, H.4
-
11
-
-
33947110984
-
Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast
-
Hayashi M, Katou Y, Itoh T, Tazumi A, Yamada Y, Takahashi T, Nakagawa T, Shirahige K, Masukata H. 2007. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast. EMBO J 26: 1327-1339
-
(2007)
EMBO J
, vol.26
, pp. 1327-1339
-
-
Hayashi, M.1
Katou, Y.2
Itoh, T.3
Tazumi, A.4
Yamada, Y.5
Takahashi, T.6
Nakagawa, T.7
Shirahige, K.8
Masukata, H.9
-
12
-
-
61849184077
-
The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent matingtype locus
-
Hayashi MT, Takahashi TS, Nakagawa T, Nakayama J, Masukata H. 2009. The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent matingtype locus. Nat Cell Biol 11: 357-362
-
(2009)
Nat Cell Biol
, vol.11
, pp. 357-362
-
-
Hayashi, M.T.1
Takahashi, T.S.2
Nakagawa, T.3
Nakayama, J.4
Masukata, H.5
-
13
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger C, Penkett CJ, Bahler J, Nurse P. 2006. Genome-wide characterization of fission yeast DNA replication origins. EMBO J 25: 5171-5179
-
(2006)
EMBO J
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bahler, J.3
Nurse, P.4
-
14
-
-
79959957543
-
Eukaryoticorigin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases
-
Heller RC, Kang S, Lam WM, Chen S, Chan CS, Bell SP. 2011. Eukaryoticorigin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases. Cell 146: 80-91
-
(2011)
Cell
, vol.146
, pp. 80-91
-
-
Heller, R.C.1
Kang, S.2
Lam, W.M.3
Chen, S.4
Chan, C.S.5
Bell, S.P.6
-
15
-
-
0035931758
-
The positioning and dynamics of origins of replication in the budding yeast nucleus
-
Heun P, Laroche T, Raghuraman MK, Gasser SM. 2001. The positioning and dynamics of origins of replication in the budding yeast nucleus. J Cell Biol 152: 385-400
-
(2001)
J Cell Biol
, vol.152
, pp. 385-400
-
-
Heun, P.1
Laroche, T.2
Raghuraman, M.K.3
Gasser, S.M.4
-
16
-
-
59649083955
-
Rif1 and rif2 inhibit localization of tel1 to DNA ends
-
Hirano Y, Fukunaga K, Sugimoto K. 2009. Rif1 and rif2 inhibit localization of tel1 to DNA ends. Mol Cell 33: 312-322
-
(2009)
Mol Cell
, vol.33
, pp. 312-322
-
-
Hirano, Y.1
Fukunaga, K.2
Sugimoto, K.3
-
17
-
-
65449178609
-
Replication timing as an epigenetic mark
-
Hiratani I, Gilbert DM. 2009. Replication timing as an epigenetic mark. Epigenetics 4: 93-97
-
(2009)
Epigenetics
, vol.4
, pp. 93-97
-
-
Hiratani, I.1
Gilbert, D.M.2
-
18
-
-
0035899938
-
Sprap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast
-
Kanoh J, Ishikawa F. 2001. spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast. Curr Biol 11: 1624-1630
-
(2001)
Curr Biol
, vol.11
, pp. 1624-1630
-
-
Kanoh, J.1
Ishikawa, F.2
-
19
-
-
0035503004
-
Regulation of replication timing in fission yeast
-
Kim SM, Huberman JA. 2001. Regulation of replication timing in fission yeast. EMBO J 20: 6115-6126
-
(2001)
EMBO J
, vol.20
, pp. 6115-6126
-
-
Kim, S.M.1
Huberman, J.A.2
-
21
-
-
65449160972
-
Genomewide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott SR, Viggiani CJ, Tavare S, Aparicio OM. 2009. Genomewide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev 23: 1077-1090
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.R.1
Viggiani, C.J.2
Tavare, S.3
Aparicio, O.M.4
-
22
-
-
10044265469
-
Counting of Rif1p and Rif2p on Saccharomyces cerevisiae telomeres regulates telomere length
-
Levy DL, Blackburn EH. 2004. Counting of Rif1p and Rif2p on Saccharomyces cerevisiae telomeres regulates telomere length. Mol Cell Biol 24: 10857-10867
-
(2004)
Mol Cell Biol
, vol.24
, pp. 10857-10867
-
-
Levy, D.L.1
Blackburn, E.H.2
-
23
-
-
79955957615
-
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation
-
Lian HY, Robertson ED, Hiraga S, Alvino GM, Collingwood D, McCune HJ, Sridhar A, Brewer BJ, Raghuraman MK, Donaldson AD. 2011. The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation. Mol Biol Cell 22: 1753-1765
-
(2011)
Mol Biol Cell
, vol.22
, pp. 1753-1765
-
-
Lian, H.Y.1
Robertson, E.D.2
Hiraga, S.3
Alvino, G.M.4
Collingwood, D.5
McCune, H.J.6
Sridhar, A.7
Brewer, B.J.8
Raghuraman, M.K.9
Donaldson, A.D.10
-
24
-
-
0034666016
-
Human Cdc7-related kinase complex
-
vitro phosphorylation of MCM by concerted actions of Cdks and Cdc7 and that of a critical threonine residue of Cdc7 by Cdks
-
Masai H, Matsui E, You Z, Ishimi Y, Tamai K, Arai K. 2000. Human Cdc7-related kinase complex. In vitro phosphorylation of MCM by concerted actions of Cdks and Cdc7 and that of a critical threonine residue of Cdc7 by Cdks. J Biol Chem 275: 29042-29052
-
(2000)
J Biol Chem
, vol.275
, pp. 29042-29052
-
-
Masai, H.1
Matsui, E.2
You, Z.3
Ishimi, Y.4
Tamai, K.5
Arai, K.6
-
25
-
-
33845976373
-
Phosphorylation of MCM4 by Cdc7 kinase facilitates its interaction with Cdc45 on the chromatin
-
Masai H, Taniyama C, Ogino K, Matsui E, Kakusho N, Matsumoto S, Kim JM, Ishii A, Tanaka T, Kobayashi T, et al. 2006. Phosphorylation of MCM4 by Cdc7 kinase facilitates its interaction with Cdc45 on the chromatin. J Biol Chem 281: 39249-39261
-
(2006)
J Biol Chem
, vol.281
, pp. 39249-39261
-
-
Masai, H.1
Taniyama, C.2
Ogino, K.3
Matsui, E.4
Kakusho, N.5
Matsumoto, S.6
Kim, J.M.7
Ishii, A.8
Tanaka, T.9
Kobayashi, T.10
-
26
-
-
77953632048
-
Eukaryotic chromosome DNA replication: Where, when, and how?
-
Masai H, Matsumoto S, You Z, Yoshizawa-Sugata N, Oda M. 2010. Eukaryotic chromosome DNA replication: Where, when, and how? Annu Rev Biochem 79: 89-130
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 89-130
-
-
Masai, H.1
Matsumoto, S.2
You, Z.3
Yoshizawa-Sugata, N.4
Oda, M.5
-
27
-
-
30044438705
-
Hsk1-Dfp1/Him1, the Cdc7-Dbf4 kinase in Schizosaccharomyces pombe, associates with Swi1, a component of the replication fork protection complex
-
Matsumoto S, Ogino K, Noguchi E, Russell P, Masai H. 2005. Hsk1-Dfp1/Him1, the Cdc7-Dbf4 kinase in Schizosaccharomyces pombe, associates with Swi1, a component of the replication fork protection complex. J BiolChem280: 42536-42542
-
(2005)
J BiolChem
, vol.280
, pp. 42536-42542
-
-
Matsumoto, S.1
Ogino, K.2
Noguchi, E.3
Russell, P.4
Masai, H.5
-
28
-
-
84855720100
-
Multiple pathways can bypass the essential role of fission yeast Hsk1 kinase in DNA replication initiation
-
Matsumoto S, Hayano M, Kanoh Y, Masai H. 2011. Multiple pathways can bypass the essential role of fission yeast Hsk1 kinase in DNA replication initiation. J Cell Biol 195: 387-401
-
(2011)
J Cell Biol
, vol.195
, pp. 387-401
-
-
Matsumoto, S.1
Hayano, M.2
Kanoh, Y.3
Masai, H.4
-
29
-
-
0037292398
-
The telomere protein Taz1 is required to prevent and repair genomic DNA breaks
-
Miller KM, Cooper JP. 2003. The telomere protein Taz1 is required to prevent and repair genomic DNA breaks. Mol Cell 11: 303-313
-
(2003)
Mol Cell
, vol.11
, pp. 303-313
-
-
Miller, K.M.1
Cooper, J.P.2
-
30
-
-
0034175605
-
Distinct protein interaction domains and protein spreading in a complex centromere
-
Partridge JF, Borgstrom B, Allshire RC. 2000. Distinct protein interaction domains and protein spreading in a complex centromere. Genes Dev 14: 783-791
-
(2000)
Genes Dev
, vol.14
, pp. 783-791
-
-
Partridge, J.F.1
Borgstrom, B.2
Allshire, R.C.3
-
31
-
-
0031005357
-
Cell cycledependent establishment of a late replication program
-
Raghuraman MK, Brewer BJ, Fangman WL. 1997. Cell cycledependent establishment of a late replication program. Science 276: 806-809
-
(1997)
Science
, vol.276
, pp. 806-809
-
-
Raghuraman, M.K.1
Brewer, B.J.2
Fangman, W.L.3
-
32
-
-
0032497529
-
A Mec1-and Rad53-dependent checkpoint controls late-firing origins of DNA replication
-
Santocanale C, Diffley JF. 1998. A Mec1-and Rad53-dependent checkpoint controls late-firing origins of DNA replication. Nature 395: 615-618
-
(1998)
Nature
, vol.395
, pp. 615-618
-
-
Santocanale, C.1
Diffley, J.F.2
-
33
-
-
33745225872
-
Genome-wide analysis of Polycomb target in Drosophila melanogaster
-
Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V. 2006. Genome-wide analysis of Polycomb target in Drosophila melanogaster. Nat Genet 38: 700-705
-
(2006)
Nat Genet
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Nix, D.A.3
Li, X.Y.4
Bourgon, R.5
Biggin, M.6
Pirrotta, V.7
-
34
-
-
40549108563
-
Cell cycle regulation of DNA replication
-
Sclafani RA, Holzen TM. 2007. Cell cycle regulation of DNA replication. Annu Rev Genet 41: 237-280
-
(2007)
Annu Rev Genet
, vol.41
, pp. 237-280
-
-
Sclafani, R.A.1
Holzen, T.M.2
-
35
-
-
0036263094
-
The mcm5-bob1 bypass of Cdc7p/Dbf4p in DNA replication depends on both Cdk1-independent and Cdk1-dependent steps in Saccharomyces cerevisiae
-
Sclafani RA, Tecklenburg M, Pierce A. 2002. The mcm5-bob1 bypass of Cdc7p/Dbf4p in DNA replication depends on both Cdk1-independent and Cdk1-dependent steps in Saccharomyces cerevisiae. Genetics 161: 47-57
-
(2002)
Genetics
, vol.161
, pp. 47-57
-
-
Sclafani, R.A.1
Tecklenburg, M.2
Pierce, A.3
-
36
-
-
33749075373
-
Cdc7-Dbf4 phosphorylates Mcm proteins via a docking site-mediated mechanism to promote S phase progression
-
Sheu YJ, Stillman B. 2006. Cdc7-Dbf4 phosphorylates Mcm proteins via a docking site-mediated mechanism to promote S phase progression. Mol Cell 24: 101-113
-
(2006)
Mol Cell
, vol.24
, pp. 101-113
-
-
Sheu, Y.J.1
Stillman, B.2
-
37
-
-
0032497548
-
Regulation of DNA-replication origins during cell-cycle progression
-
Shirahige K, Hori Y, Shiraishi K, Yamashita M, Takahashi K, Obuse C, Tsurimoto T, Yoshikawa H. 1998. Regulation of DNA-replication origins during cell-cycle progression. Nature 395: 618-621
-
(1998)
Nature
, vol.395
, pp. 618-621
-
-
Shirahige, K.1
Hori, Y.2
Shiraishi, K.3
Yamashita, M.4
Takahashi, K.5
Obuse, C.6
Tsurimoto, T.7
Yoshikawa, H.8
-
38
-
-
3543064379
-
Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint
-
Silverman J, Takai H, Buonomo SB, Eisenhaber F, de Lange T. 2004. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev 18: 2108-2119
-
(2004)
Genes Dev
, vol.18
, pp. 2108-2119
-
-
Silverman, J.1
Takai, H.2
Buonomo, S.B.3
Eisenhaber, F.4
de Lange, T.5
-
39
-
-
0033781393
-
Schizosaccharomyces pombe Hsk1p is a potential cds1p target required for genome integrity
-
Snaith HA, Brown GW, Forsburg SL. 2000. Schizosaccharomyces pombe Hsk1p is a potential cds1p target required for genome integrity. Mol Cell Biol 20: 7922-7932
-
(2000)
Mol Cell Biol
, vol.20
, pp. 7922-7932
-
-
Snaith, H.A.1
Brown, G.W.2
Forsburg, S.L.3
-
40
-
-
18344384065
-
DNA replication and progression through S phase
-
Takeda DY, Dutta A. 2005. DNA replication and progression through S phase. Oncogene 24: 2827-2843
-
(2005)
Oncogene
, vol.24
, pp. 2827-2843
-
-
Takeda, D.Y.1
Dutta, A.2
-
41
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. 2002. Histone acetylation regulates the time of replication origin firing. Mol Cell 10: 1223-1233
-
(2002)
Mol Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
42
-
-
59649105477
-
Replisome stalling and stabilization at CGG repeats, which are responsible for chromosomal fragility
-
Voineagu I, Surka CF, Shishkin AA, Krasilnikova MM, Mirkin SM. 2009. Replisome stalling and stabilization at CGG repeats, which are responsible for chromosomal fragility. Nat Struct Mol Biol 16: 226-228
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 226-228
-
-
Voineagu, I.1
Surka, C.F.2
Shishkin, A.A.3
Krasilnikova, M.M.4
Mirkin, S.M.5
-
43
-
-
0034671935
-
Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts
-
Walter JC. 2000. Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts. J Biol Chem 275: 39773-39778
-
(2000)
J Biol Chem
, vol.275
, pp. 39773-39778
-
-
Walter, J.C.1
-
44
-
-
61349201535
-
Establishing the program of origin firing during S phase in fission yeast
-
Wu PY, Nurse P. 2009. Establishing the program of origin firing during S phase in fission yeast. Cell 136: 852-864
-
(2009)
Cell
, vol.136
, pp. 852-864
-
-
Wu, P.Y.1
Nurse, P.2
-
45
-
-
33645846943
-
Two-stage mechanism for activation of the DNA replication checkpoint kinase Cds1 in fission yeast
-
Xu YJ, Davenport M, Kelly TJ. 2006. Two-stage mechanism for activation of the DNA replication checkpoint kinase Cds1 in fission yeast. Genes Dev 20: 990-1003
-
(2006)
Genes Dev
, vol.20
, pp. 990-1003
-
-
Xu, Y.J.1
Davenport, M.2
Kelly, T.J.3
-
46
-
-
33749345709
-
Ordered assembly of Sld3, GINS and Cdc45 is distinctly regulated by DDK and CDK for activation of replication origins
-
Yabuuchi H, Yamada Y, Uchida T, Sunathvanichkul T, Nakagawa T, Masukata H. 2006. Ordered assembly of Sld3, GINS and Cdc45 is distinctly regulated by DDK and CDK for activation of replication origins. EMBO J 25: 4663-4674
-
(2006)
EMBO J
, vol.25
, pp. 4663-4674
-
-
Yabuuchi, H.1
Yamada, Y.2
Uchida, T.3
Sunathvanichkul, T.4
Nakagawa, T.5
Masukata, H.6
-
47
-
-
4744357937
-
Enforcement of late replication origin firing by clusters of short G-rich DNA sequences
-
Yompakdee C, Huberman JA. 2004. Enforcement of late replication origin firing by clusters of short G-rich DNA sequences. J Biol Chem 279: 42337-42344
-
(2004)
J Biol Chem
, vol.279
, pp. 42337-42344
-
-
Yompakdee, C.1
Huberman, J.A.2
-
48
-
-
0242579867
-
Replication checkpoint protein Mrc1 is regulated by Rad3 and Tel1 in fission yeast
-
Zhao H, Tanaka K, Nogochi E, Nogochi C, Russell P. 2003. Replication checkpoint protein Mrc1 is regulated by Rad3 and Tel1 in fission yeast. Mol Cell Biol 23: 8395-8403.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 8395-8403
-
-
Zhao, H.1
Tanaka, K.2
Nogochi, E.3
Nogochi, C.4
Russell, P.5
|