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Volumn 64, Issue 3, 2012, Pages 603-617

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis

Author keywords

Alignment; Animalia; LSU rRNA; PHASE program; Secondary structure substitution models; SSU (18S) rRNA

Indexed keywords

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CHORDATA; CLASSIFICATION; CONFORMATION; EVOLUTION; GENETICS; INVERTEBRATE; PHYLOGENY; RNA GENE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STATISTICAL MODEL;

EID: 84863108240     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.05.016     Document Type: Article
Times cited : (50)

References (133)
  • 3
    • 67949117042 scopus 로고    scopus 로고
    • Concatenated SSU and LSU rDNA data confirm the main evolutionary trends with myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics
    • Bartosova P., Fiala I., Hypsa V. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends with myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Mol. Phylogenet. Evol. 2009, 53:81-93.
    • (2009) Mol. Phylogenet. Evol. , vol.53 , pp. 81-93
    • Bartosova, P.1    Fiala, I.2    Hypsa, V.3
  • 8
    • 60549112849 scopus 로고    scopus 로고
    • A hierarchical model for evolution of 23S ribosomal RNA
    • Bokov K., Steinberg S.V. A hierarchical model for evolution of 23S ribosomal RNA. Nature 2009, 457:977-980.
    • (2009) Nature , vol.457 , pp. 977-980
    • Bokov, K.1    Steinberg, S.V.2
  • 9
    • 52049092954 scopus 로고    scopus 로고
    • Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom
    • Bourlat S.J., Nielsen C., Economou A.D., Telford M.J. Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom. Mol. Phylogenet. Evol. 2008, 49:23-31.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 23-31
    • Bourlat, S.J.1    Nielsen, C.2    Economou, A.D.3    Telford, M.J.4
  • 10
    • 0141702035 scopus 로고    scopus 로고
    • Larval development in the Homoscleromorpha (Porifera, Demospongiae)
    • Boury-Esnault N., Ereskovsky A., Bezac C., Tokina D. Larval development in the Homoscleromorpha (Porifera, Demospongiae). Invert. Biol. 2003, 122:187-202.
    • (2003) Invert. Biol. , vol.122 , pp. 187-202
    • Boury-Esnault, N.1    Ereskovsky, A.2    Bezac, C.3    Tokina, D.4
  • 11
    • 57749185463 scopus 로고    scopus 로고
    • Parallel adaptations to high temperatures in the Archaean eon
    • Boussau B., Blanquart S., Necsulea A., Lartillot N., Gouy M. Parallel adaptations to high temperatures in the Archaean eon. Nature 2008, 456:942-946.
    • (2008) Nature , vol.456 , pp. 942-946
    • Boussau, B.1    Blanquart, S.2    Necsulea, A.3    Lartillot, N.4    Gouy, M.5
  • 12
    • 69049103112 scopus 로고    scopus 로고
    • The RNA structure alignment ontology
    • Brown J.W., Birmingham A., Griffiths P.E. The RNA structure alignment ontology. RNA 2009, 15:1623-1631.
    • (2009) RNA , vol.15 , pp. 1623-1631
    • Brown, J.W.1    Birmingham, A.2    Griffiths, P.E.3
  • 13
    • 0034712915 scopus 로고    scopus 로고
    • Evolution of the chordate body plan: New insights from phylogenetic analysis of deuterostome phyla
    • Cameron C.B., Garey J.R., Swalla B.J. Evolution of the chordate body plan: New insights from phylogenetic analysis of deuterostome phyla. Proc. Natl. Acad. Sci. USA 2000, 97:4469-4474.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 4469-4474
    • Cameron, C.B.1    Garey, J.R.2    Swalla, B.J.3
  • 15
    • 0031770677 scopus 로고    scopus 로고
    • The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
    • Castresana J., Feldmaier-Fuchs G., Yokobori S., Satoh N., Paabo S. The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria. Genetics 1998, 150:1115-1123.
    • (1998) Genetics , vol.150 , pp. 1115-1123
    • Castresana, J.1    Feldmaier-Fuchs, G.2    Yokobori, S.3    Satoh, N.4    Paabo, S.5
  • 16
    • 77953516038 scopus 로고    scopus 로고
    • A phylogenomic perspective on the new era of ichthyology
    • Chen W., Mayden R. A phylogenomic perspective on the new era of ichthyology. Bioscience 2010, 60:421-428.
    • (2010) Bioscience , vol.60 , pp. 421-428
    • Chen, W.1    Mayden, R.2
  • 17
    • 33745146522 scopus 로고    scopus 로고
    • The evolutionary origins of nematodes within the order Strongylida are related to predilection sites within hosts
    • Chilton N.B., Huby-Chilton F., Gasser R.B., Beveridge I. The evolutionary origins of nematodes within the order Strongylida are related to predilection sites within hosts. Mol. Phylogenet. Evol. 2006, 40:118-128.
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 118-128
    • Chilton, N.B.1    Huby-Chilton, F.2    Gasser, R.B.3    Beveridge, I.4
  • 18
    • 0023064487 scopus 로고
    • On the evolution of ribosomal RNA
    • Clark C.G. On the evolution of ribosomal RNA. J. Mol. Evol. 1987, 25:343-350.
    • (1987) J. Mol. Evol. , vol.25 , pp. 343-350
    • Clark, C.G.1
  • 19
    • 33644600635 scopus 로고    scopus 로고
    • Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models
    • Collins A.G., Schuchert P., Marques A.C., Jankowski T., Medina M., Schierwater B. Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models. Syst. Biol. 2006, 55:97-115.
    • (2006) Syst. Biol. , vol.55 , pp. 97-115
    • Collins, A.G.1    Schuchert, P.2    Marques, A.C.3    Jankowski, T.4    Medina, M.5    Schierwater, B.6
  • 22
    • 0029981542 scopus 로고    scopus 로고
    • Database on the structure of large ribosomal subunit RNA
    • De Rijk P., Van de Peer P., De Wachter R. Database on the structure of large ribosomal subunit RNA. Nucl. Acids Res. 1996, 24:92-97.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 92-97
    • De Rijk, P.1    Van de Peer, P.2    De Wachter, R.3
  • 23
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc F., Brinkmann H., Chourrout D., Philippe H. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 2006, 439:965-968.
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 24
    • 77950568108 scopus 로고    scopus 로고
    • Geological history and phylogeny of Chelicerata
    • Dunlop J.A. Geological history and phylogeny of Chelicerata. Arthropod Struct. Develop. 2010, 39:124-142.
    • (2010) Arthropod Struct. Develop. , vol.39 , pp. 124-142
    • Dunlop, J.A.1
  • 26
    • 78649343343 scopus 로고    scopus 로고
    • The phylogenetic position of Myxozoa: exploring conflicting signals in phylogenomic and ribosomal data sets
    • Evans N.M., Holder M.T., Barbeitos M.S., Okamura B., Cartwright P. The phylogenetic position of Myxozoa: exploring conflicting signals in phylogenomic and ribosomal data sets. Mol. Biol. Evol. 2010, 27:2733-2746.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2733-2746
    • Evans, N.M.1    Holder, M.T.2    Barbeitos, M.S.3    Okamura, B.4    Cartwright, P.5
  • 27
    • 84959798530 scopus 로고
    • Cases in which parsimony and compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony and compatibility methods will be positively misleading. Syst. Zool. 1978, 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 28
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J. Phylogenies and the comparative method. Am. Nat. 1985, 125:1-15.
    • (1985) Am. Nat. , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 29
    • 3242701529 scopus 로고    scopus 로고
    • Modelling compositional heterogeneity
    • Foster P.G. Modelling compositional heterogeneity. Syst. Biol. 2004, 53:485-495.
    • (2004) Syst. Biol. , vol.53 , pp. 485-495
    • Foster, P.G.1
  • 30
    • 33745125939 scopus 로고    scopus 로고
    • Phylogenetic relationships among Syndermata inferred from nuclear and mitochondrial gene sequences
    • García-Varela M., Nadler S.A. Phylogenetic relationships among Syndermata inferred from nuclear and mitochondrial gene sequences. Mol. Phylogenet. Evol. 2006, 40:61-72.
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 61-72
    • García-Varela, M.1    Nadler, S.A.2
  • 31
    • 5044230709 scopus 로고    scopus 로고
    • A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera; Chrysomelidae; Galerucinae)
    • Gillespie J.J., Cannone J.J., Gutell R.R., Cognato A.I. A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera; Chrysomelidae; Galerucinae). Insect Mol. Biol. 2004, 13:495-518.
    • (2004) Insect Mol. Biol. , vol.13 , pp. 495-518
    • Gillespie, J.J.1    Cannone, J.J.2    Gutell, R.R.3    Cognato, A.I.4
  • 32
    • 23944456829 scopus 로고    scopus 로고
    • Predicted secondary structure of 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation
    • Gillespie J.J., Yoder M.J., Wharton R.A. Predicted secondary structure of 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation. J. Mol. Evol. 2005, 61:114-137.
    • (2005) J. Mol. Evol. , vol.61 , pp. 114-137
    • Gillespie, J.J.1    Yoder, M.J.2    Wharton, R.A.3
  • 33
    • 33750442556 scopus 로고    scopus 로고
    • Characteristics of nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements
    • Gillespie J.J., Johnston J.S., Cannone J.J., Gutell R.R. Characteristics of nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements. Insect Mol. Biol. 2006, 15:657-686.
    • (2006) Insect Mol. Biol. , vol.15 , pp. 657-686
    • Gillespie, J.J.1    Johnston, J.S.2    Cannone, J.J.3    Gutell, R.R.4
  • 34
    • 40549139078 scopus 로고    scopus 로고
    • Assembling the lophotrochozoan (=spiralian) tree of life
    • Giribet G. Assembling the lophotrochozoan (=spiralian) tree of life. Philos. Trans. Roy. Soc. B 2008, 363:1513-1522.
    • (2008) Philos. Trans. Roy. Soc. B , vol.363 , pp. 1513-1522
    • Giribet, G.1
  • 35
    • 9644270283 scopus 로고    scopus 로고
    • Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects
    • Giribet G., Edgecombe G.D., Carpenter J.M., D'Haese C.A., Wheeler W.C. Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects. Org. Divers. Evol. 2004, 4:319-340.
    • (2004) Org. Divers. Evol. , vol.4 , pp. 319-340
    • Giribet, G.1    Edgecombe, G.D.2    Carpenter, J.M.3    D'Haese, C.A.4    Wheeler, W.C.5
  • 36
    • 84919771543 scopus 로고    scopus 로고
    • Assembling the spiralian tree of life
    • Oxford University Press, Oxford, Fossils and Trees, M.J. Telford, D.T.J. Littlewood (Eds.)
    • Giribet G., Dunn C.W., Edgecombe G.D., Hejnol A., Martindale M.Q., Rouse G.W. Assembling the spiralian tree of life. Animal Evolution: Genes, Genomes 2009, 52-64. Oxford University Press, Oxford, Fossils and Trees. M.J. Telford, D.T.J. Littlewood (Eds.).
    • (2009) Animal Evolution: Genes, Genomes , pp. 52-64
    • Giribet, G.1    Dunn, C.W.2    Edgecombe, G.D.3    Hejnol, A.4    Martindale, M.Q.5    Rouse, G.W.6
  • 37
    • 84863103628 scopus 로고    scopus 로고
    • PHASE: a Software Package for Phylogenetics And Sequence Evolution. Version 2.0 manual
    • Gowri-Shankar, V., Jow, H., 2006. PHASE: a Software Package for Phylogenetics And Sequence Evolution. Version 2.0 manual. http://www.bioinf.man.uk/resources/phase/.
    • (2006)
    • Gowri-Shankar, V.1    Jow, H.2
  • 38
    • 34548074524 scopus 로고    scopus 로고
    • A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model
    • Gowri-Shankar V., Rattray M. A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model. Mol. Biol. Evol. 2007, 24:1286-1299.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1286-1299
    • Gowri-Shankar, V.1    Rattray, M.2
  • 39
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A. Is it better to add taxa or characters to a difficult phylogenetic problem?. Syst. Biol. 1998, 47:9-17.
    • (1998) Syst. Biol. , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 40
    • 0027265356 scopus 로고
    • Collection of small subunit (16S and 16S-like) ribosomal RNA structures
    • Gutell R.R. Collection of small subunit (16S and 16S-like) ribosomal RNA structures. Nucl. Acids Res. 1993, 21:3051-3054.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3051-3054
    • Gutell, R.R.1
  • 41
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993
    • Gutell R.R., Gray M.W., Schnare M.N. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993. Nucl. Acids Res. 1993, 21:3055-3074.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 42
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell R.R., Larsen N., Woese C.R. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 1994, 58:10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 45
    • 78649382339 scopus 로고    scopus 로고
    • Mammalian evolution may not be strictly bifurcating
    • Hallstrom B.M., Janke A. Mammalian evolution may not be strictly bifurcating. Mol. Biol. Evol. 2010, 27:2804-2916.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2804-2916
    • Hallstrom, B.M.1    Janke, A.2
  • 46
    • 77953138594 scopus 로고    scopus 로고
    • Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida)
    • Hausdorf B., Helmkampf M., Nesnidal M.P., Bruchhaus I. Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida). Mol. Phylogenet. Evol. 2010, 55:1121-1127.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 1121-1127
    • Hausdorf, B.1    Helmkampf, M.2    Nesnidal, M.P.3    Bruchhaus, I.4
  • 48
    • 79952175803 scopus 로고    scopus 로고
    • A twist in time - the evolution of spiral cleavage in the light of animal phylogeny
    • Hejnol A. A twist in time - the evolution of spiral cleavage in the light of animal phylogeny. Integr. Comp. Biol. 2010, 1-12. 10.1093/icb/icq103.
    • (2010) Integr. Comp. Biol.
    • Hejnol, A.1
  • 50
    • 0026300584 scopus 로고
    • Ribosomal DNA: Molecular evolution and phylogenetic inference
    • Hillis D.M., Dixon M.T. Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart. Rev. Biol. 1991, 66:411-453.
    • (1991) Quart. Rev. Biol. , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 53
    • 73349114907 scopus 로고    scopus 로고
    • Peeling the onion: ribosomes are ancient molecular fossils
    • Hsiao C., Mohan S., Kalahar B.K., Williams L.D. Peeling the onion: ribosomes are ancient molecular fossils. Mol. Biol. Evol. 2009, 26:2415-2425.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2415-2425
    • Hsiao, C.1    Mohan, S.2    Kalahar, B.K.3    Williams, L.D.4
  • 54
    • 79951580071 scopus 로고    scopus 로고
    • Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences
    • Ishiwata K., Sasaki G., Ogawa J., Miyata T., Su Z.-H. Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences. Mol. Phylogenet. Evol. 2011, 58:169-180.
    • (2011) Mol. Phylogenet. Evol. , vol.58 , pp. 169-180
    • Ishiwata, K.1    Sasaki, G.2    Ogawa, J.3    Miyata, T.4    Su, Z.-H.5
  • 55
    • 34447295896 scopus 로고    scopus 로고
    • Buddenbrockia is a cnidarian worm
    • Jimenez-Guri E., Philippe H. Buddenbrockia is a cnidarian worm. Science 2007, 317:116-118.
    • (2007) Science , vol.317 , pp. 116-118
    • Jimenez-Guri, E.1    Philippe, H.2
  • 56
    • 80054947944 scopus 로고    scopus 로고
    • How the worm got its pharynx: phylogeny, classification and Bayesian assessment of character evolution in Acoela
    • Jondelius U., Wallberg A., Hooge M., Raikova O.I. How the worm got its pharynx: phylogeny, classification and Bayesian assessment of character evolution in Acoela. Syst. Biol. 2011, 60:845-871.
    • (2011) Syst. Biol. , vol.60 , pp. 845-871
    • Jondelius, U.1    Wallberg, A.2    Hooge, M.3    Raikova, O.I.4
  • 57
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 2008, 9:286-298.
    • (2008) Brief. Bioinform. , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 58
    • 44149125756 scopus 로고    scopus 로고
    • Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    • Katoh K., Toh H. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 2008, 9:212.
    • (2008) BMC Bioinformatics , vol.9 , pp. 212
    • Katoh, K.1    Toh, H.2
  • 60
    • 0029365329 scopus 로고
    • Use of rRNA secondary structures in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs
    • Kjer K.M. Use of rRNA secondary structures in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Mol. Phylogenet. Evol. 1995, 4:314-330.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 314-330
    • Kjer, K.M.1
  • 61
    • 3242721251 scopus 로고    scopus 로고
    • Aligned 18S and insect phylogeny
    • Kjer K.M. Aligned 18S and insect phylogeny. Syst. Biol. 2004, 53:506-514.
    • (2004) Syst. Biol. , vol.53 , pp. 506-514
    • Kjer, K.M.1
  • 62
    • 34247577270 scopus 로고    scopus 로고
    • Opinions of multiple sequence alignment and an empirical comparison of repeatability and accuracy between POY and structural alignment
    • Kjer K.M., Gillespie J.J., Ober K.A. Opinions of multiple sequence alignment and an empirical comparison of repeatability and accuracy between POY and structural alignment. Syst. Biol. 2007, 56:133-146.
    • (2007) Syst. Biol. , vol.56 , pp. 133-146
    • Kjer, K.M.1    Gillespie, J.J.2    Ober, K.A.3
  • 63
    • 43949135527 scopus 로고    scopus 로고
    • Origin and higher level relationships of psoroptidian mites (Acari: Astigmata: Psoroptidia): evidence from three nuclear genes
    • Klimov P.B., OConnor B.M. Origin and higher level relationships of psoroptidian mites (Acari: Astigmata: Psoroptidia): evidence from three nuclear genes. Mol. Phylogenet. Evol. 2008, 47:1135-1156.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 1135-1156
    • Klimov, P.B.1    Oconnor, B.M.2
  • 64
    • 36749047391 scopus 로고    scopus 로고
    • On the phylogenetic relationshops of hadromerid and poecilosclerid sponges
    • Kober K.M., Nichols S.A. On the phylogenetic relationshops of hadromerid and poecilosclerid sponges. J. Mar. Biol. Assoc. UK 2007, 87:1585-1598.
    • (2007) J. Mar. Biol. Assoc. UK , vol.87 , pp. 1585-1598
    • Kober, K.M.1    Nichols, S.A.2
  • 67
    • 79957452882 scopus 로고    scopus 로고
    • Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa
    • Letsch H.O., Kjer K.M. Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa. BMC Evol. Biol. 2011, 11:146.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 146
    • Letsch, H.O.1    Kjer, K.M.2
  • 68
    • 74949091626 scopus 로고    scopus 로고
    • Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation
    • Letsch H.O., Greve C., Kuck P., Fleck G., Stocsits R.R., Misof B. Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation. Mol. Phylogenet. Evol. 2010, 53:758-771.
    • (2010) Mol. Phylogenet. Evol. , vol.53 , pp. 758-771
    • Letsch, H.O.1    Greve, C.2    Kuck, P.3    Fleck, G.4    Stocsits, R.R.5    Misof, B.6
  • 69
    • 0037314495 scopus 로고    scopus 로고
    • Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the carcomer theory
    • Lockyer A.E., Olson P.D., Littlewood D.T.J. Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the carcomer theory. Biol. J. Linn. Soc. 2003, 78:155-171.
    • (2003) Biol. J. Linn. Soc. , vol.78 , pp. 155-171
    • Lockyer, A.E.1    Olson, P.D.2    Littlewood, D.T.J.3
  • 70
    • 20444400537 scopus 로고    scopus 로고
    • The phylogenetic positions of three basal-hexapod groups (Protura, Diplura, and Collembola) based on ribosomal RNA gene sequences
    • Luan Y.X., Mallatt J.M., Xie R.D., Yang Y.M., Yin W.Y. The phylogenetic positions of three basal-hexapod groups (Protura, Diplura, and Collembola) based on ribosomal RNA gene sequences. Mol. Biol. Evol. 2005, 22:1579-1592.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1579-1592
    • Luan, Y.X.1    Mallatt, J.M.2    Xie, R.D.3    Yang, Y.M.4    Yin, W.Y.5
  • 71
    • 84863098395 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts. (Chapter 6)
    • Lynch M. The Origins of Genome Architecture 2007, Sinauer Associates, Sunderland, Massachusetts, pp. 121-150 (Chapter 6).
    • (2007) The Origins of Genome Architecture , pp. 121-150
    • Lynch, M.1
  • 72
    • 84863086543 scopus 로고    scopus 로고
    • Mesquite: A Modular System for Evolutionary Analysis. Version 2.71
    • Maddison, W.P., Maddison D.R., 2010. Mesquite: A Modular System for Evolutionary Analysis. Version 2.71 http://mesquiteproject.org.
    • (2010)
    • Maddison, W.P.1    Maddison, D.R.2
  • 73
    • 33746693659 scopus 로고    scopus 로고
    • Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch
    • Mallatt J., Giribet G. Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch. Mol. Phylogenet. Evol. 2006, 40:772-794.
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 772-794
    • Mallatt, J.1    Giribet, G.2
  • 74
    • 0036184428 scopus 로고    scopus 로고
    • Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes
    • Mallatt J., Winchell C.J. Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes. Mol. Biol. Evol. 2002, 19:289-301.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 289-301
    • Mallatt, J.1    Winchell, C.J.2
  • 75
    • 34249276761 scopus 로고    scopus 로고
    • Ribosomal RNA genes and deuterostome phylogeny revisited: more cyclostomes, elasmobranchs, reptiles, and a brittle star
    • Mallatt J., Winchell C.J. Ribosomal RNA genes and deuterostome phylogeny revisited: more cyclostomes, elasmobranchs, reptiles, and a brittle star. Mol. Phylogenet. Evol. 2007, 43:1005-1022.
    • (2007) Mol. Phylogenet. Evol. , vol.43 , pp. 1005-1022
    • Mallatt, J.1    Winchell, C.J.2
  • 76
    • 0347457283 scopus 로고    scopus 로고
    • Ecdysozoan phylogeny and Bayesian inference. first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin
    • Mallatt J., Garey J.R., Shultz J.W. Ecdysozoan phylogeny and Bayesian inference. first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol. Phylogenet. Evol. 2004, 31:178-191.
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 178-191
    • Mallatt, J.1    Garey, J.R.2    Shultz, J.W.3
  • 77
    • 76849086222 scopus 로고    scopus 로고
    • Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction
    • Mallatt J., Craig C.W., Yoder M.J. Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction. Mol. Phylogenet. Evol. 2010, 55:1-17.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 1-17
    • Mallatt, J.1    Craig, C.W.2    Yoder, M.J.3
  • 78
    • 27544508958 scopus 로고    scopus 로고
    • A Gamma mixture model better accounts for among-site rate heterogeneity
    • Mayrose I., Friedman N., Pupko T. A Gamma mixture model better accounts for among-site rate heterogeneity. Bioinformatics 2005, 21(Suppl. 2):ii151-ii158.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Mayrose, I.1    Friedman, N.2    Pupko, T.3
  • 81
    • 77949714108 scopus 로고    scopus 로고
    • Fast evolving 18S rRNA sequences from Solenogastres (Mollusca) resist standard PCR amplification and give new insights into mollusk substitution rate heterogeneity
    • Meyer A., Todt C., Mikkelson N.T., Lieb B. Fast evolving 18S rRNA sequences from Solenogastres (Mollusca) resist standard PCR amplification and give new insights into mollusk substitution rate heterogeneity. BMC Evol. Biol. 2010, 10:70.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 70
    • Meyer, A.1    Todt, C.2    Mikkelson, N.T.3    Lieb, B.4
  • 82
    • 0023071729 scopus 로고
    • Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure
    • Michot B., Bachellerie J.P. Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure. Biochimie 1987, 69:11-23.
    • (1987) Biochimie , vol.69 , pp. 11-23
    • Michot, B.1    Bachellerie, J.P.2
  • 83
    • 79957893436 scopus 로고    scopus 로고
    • Phylogenetic informativeness profiling of 12 genes for 28 vertebrate taxa without divergence dates
    • Moeller A.H., Townsend J.P. Phylogenetic informativeness profiling of 12 genes for 28 vertebrate taxa without divergence dates. Mol. Phylogenet. Evol. 2011, 60:271-272.
    • (2011) Mol. Phylogenet. Evol. , vol.60 , pp. 271-272
    • Moeller, A.H.1    Townsend, J.P.2
  • 84
    • 84863107216 scopus 로고    scopus 로고
    • Review of: Sequence Alignment: Methods, Models, Concepts, and Strategies. Rosenberg, M.S. (Ed.), University of California Press, Berkeley
    • Morrison, D.A., 2010. Review of: Sequence Alignment: Methods, Models, Concepts, and Strategies. Rosenberg, M.S. (Ed.), University of California Press, Berkeley. Syst. Biol. 59, 363-365.
    • (2010) Syst. Biol. , vol.59 , pp. 363-365
    • Morrison, D.A.1
  • 85
    • 77956230468 scopus 로고    scopus 로고
    • Including secondary structure, fossils and molecular dating in the centipede tree of life
    • Murienne J., Edgecombe G.D., Giribet G. Including secondary structure, fossils and molecular dating in the centipede tree of life. Mol. Phylogenet. Evol. 2010, 57:301-313.
    • (2010) Mol. Phylogenet. Evol. , vol.57 , pp. 301-313
    • Murienne, J.1    Edgecombe, G.D.2    Giribet, G.3
  • 86
    • 79952147429 scopus 로고    scopus 로고
    • Quantifying the impact of dependent evolution among sites in phylogenetic inference
    • Nasrallah C.A., Mathews D.H., Huelsenbeck J.P. Quantifying the impact of dependent evolution among sites in phylogenetic inference. Syst. Biol. 2011, 60:60-73.
    • (2011) Syst. Biol. , vol.60 , pp. 60-73
    • Nasrallah, C.A.1    Mathews, D.H.2    Huelsenbeck, J.P.3
  • 87
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: inference of RNA alignments
    • Nawrocki E.P., Kolbe D.L., Eddy S.R. Infernal 1.0: inference of RNA alignments. Bioinformatics 2009, 25:1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 88
    • 77955950911 scopus 로고    scopus 로고
    • Compositional heterogeneity and phylogenomic inference of metazoan relationships
    • Nesnidal M.P., Helmkampf M., Bruchhaus I., Hausdorf B. Compositional heterogeneity and phylogenomic inference of metazoan relationships. Mol. Biol. Evol. 2010, 27:2095-2104.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2095-2104
    • Nesnidal, M.P.1    Helmkampf, M.2    Bruchhaus, I.3    Hausdorf, B.4
  • 89
    • 64849090758 scopus 로고    scopus 로고
    • Lophotrochozoa internal phylogeny: new insight from an up-to-date analysis of nuclear ribosomal genes
    • Paps J., Baguñà J., Riutort M. Lophotrochozoa internal phylogeny: new insight from an up-to-date analysis of nuclear ribosomal genes. Proc. Roy. Soc. B 2009, 276:1245-1254.
    • (2009) Proc. Roy. Soc. B , vol.276 , pp. 1245-1254
    • Paps, J.1    Baguñà, J.2    Riutort, M.3
  • 90
    • 70349909714 scopus 로고    scopus 로고
    • A broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal Acoelomorpha
    • Paps J., Baguñà J., Riutort M. A broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal Acoelomorpha. Mol. Biol. Evol. 2009, 26:2397-2406.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2397-2406
    • Paps, J.1    Baguñà, J.2    Riutort, M.3
  • 91
    • 33745135433 scopus 로고    scopus 로고
    • Lophotrochozoan phylogeny assessed with LSU and SSU data: evidence of lophophorate polyphyly
    • Passamaneck Y., Halanych K.M. Lophotrochozoan phylogeny assessed with LSU and SSU data: evidence of lophophorate polyphyly. Mol. Phylogenet. Evol. 2006, 40:20-28.
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 20-28
    • Passamaneck, Y.1    Halanych, K.M.2
  • 92
    • 3042744353 scopus 로고    scopus 로고
    • Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences
    • Passamaneck Y.J., Schander C., Halanych K.M. Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences. Mol. Phylogenet. Evol. 2004, 32:25-38.
    • (2004) Mol. Phylogenet. Evol. , vol.32 , pp. 25-38
    • Passamaneck, Y.J.1    Schander, C.2    Halanych, K.M.3
  • 93
    • 33749516796 scopus 로고    scopus 로고
    • Large-scale sequencing and the new animal phylogeny
    • Philippe H., Telford M.A. Large-scale sequencing and the new animal phylogeny. Trends Ecol. Evol. 2006, 21:614-620.
    • (2006) Trends Ecol. Evol. , vol.21 , pp. 614-620
    • Philippe, H.1    Telford, M.A.2
  • 94
    • 65249099546 scopus 로고    scopus 로고
    • Phylogenomics revives traditional views on deep animal relationships
    • Philippe H., Derille R., et al. Phylogenomics revives traditional views on deep animal relationships. Curr. Biol. 2009, 19:706-712.
    • (2009) Curr. Biol. , vol.19 , pp. 706-712
    • Philippe, H.1    Derille, R.2
  • 98
    • 16844382374 scopus 로고    scopus 로고
    • Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic
    • Regier J.C., Shultz J.W., Kambic R.E. Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic. Proc. Roy. Soc. B 2005, 272:395-401.
    • (2005) Proc. Roy. Soc. B , vol.272 , pp. 395-401
    • Regier, J.C.1    Shultz, J.W.2    Kambic, R.E.3
  • 100
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A., Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 2005, 22:1337-1344.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 103
    • 0035156561 scopus 로고    scopus 로고
    • RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods
    • Savill N.J., Hoyle D.C., Higgs P.G. RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods. Genetics 2001, 157:399-411.
    • (2001) Genetics , vol.157 , pp. 399-411
    • Savill, N.J.1    Hoyle, D.C.2    Higgs, P.G.3
  • 105
    • 0029877001 scopus 로고    scopus 로고
    • Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA
    • Schnare M.N., Damberger S.H., Gray M.W., Gutell R.R. Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA. J. Mol. Biol. 1996, 256:701-719.
    • (1996) J. Mol. Biol. , vol.256 , pp. 701-719
    • Schnare, M.N.1    Damberger, S.H.2    Gray, M.W.3    Gutell, R.R.4
  • 106
    • 77950551889 scopus 로고    scopus 로고
    • The geological record and phylogeny of the Myriapoda
    • Shear W.A., Edgecombe G.D. The geological record and phylogeny of the Myriapoda. Arthropod Struct. Develop. 2010, 39:174-190.
    • (2010) Arthropod Struct. Develop. , vol.39 , pp. 174-190
    • Shear, W.A.1    Edgecombe, G.D.2
  • 107
    • 70349434888 scopus 로고    scopus 로고
    • Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
    • Sheffield N.C., Song H., Cameron S.L., Whiting M.F. Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Syst. Biol. 2009, 58:381-394.
    • (2009) Syst. Biol. , vol.58 , pp. 381-394
    • Sheffield, N.C.1    Song, H.2    Cameron, S.L.3    Whiting, M.F.4
  • 108
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 2002, 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 109
    • 33646066557 scopus 로고    scopus 로고
    • Rolling circle amplification of metazoan mitochondrial genomes
    • Simison W.B., Lindberg D.R., Boore J.L. Rolling circle amplification of metazoan mitochondrial genomes. Mol. Phylogenet. Evol. 2006, 39:562-567.
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 562-567
    • Simison, W.B.1    Lindberg, D.R.2    Boore, J.L.3
  • 110
    • 29844452150 scopus 로고    scopus 로고
    • Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
    • Smit S., Yarus M., Knight R. Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. RNA 2006, 12:1-14.
    • (2006) RNA , vol.12 , pp. 1-14
    • Smit, S.1    Yarus, M.2    Knight, R.3
  • 111
    • 34250880169 scopus 로고    scopus 로고
    • Evolutionary rates vary among rRNA structural elements
    • Smit S., Widmann J., Knight R. Evolutionary rates vary among rRNA structural elements. Nucl. Acids Res. 2007, 35:3339-3354.
    • (2007) Nucl. Acids Res. , vol.35 , pp. 3339-3354
    • Smit, S.1    Widmann, J.2    Knight, R.3
  • 113
    • 70349932469 scopus 로고    scopus 로고
    • Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa
    • Sperling E.A., Peterson K.J., Pisani D. Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Mol. Biol. Evol. 2009, 26:2261-2274.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2261-2274
    • Sperling, E.A.1    Peterson, K.J.2    Pisani, D.3
  • 115
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 75:758-771.
    • (2008) Syst. Biol. , vol.75 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 116
    • 33646878378 scopus 로고    scopus 로고
    • Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs
    • Steinke D., Salzburger W., Meyer A. Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J. Mol. Evol. 2006, 62:772-784.
    • (2006) J. Mol. Evol. , vol.62 , pp. 772-784
    • Steinke, D.1    Salzburger, W.2    Meyer, A.3
  • 117
    • 70350653828 scopus 로고    scopus 로고
    • Accurate and efficient reconstruction of deep phylogenies from structured RNAs
    • Stocsits R.R., Letsch H., Hertel J., Misof B., Stadler P.F. Accurate and efficient reconstruction of deep phylogenies from structured RNAs. Nucl. Acids Res. 2009, 37:6184-6193.
    • (2009) Nucl. Acids Res. , vol.37 , pp. 6184-6193
    • Stocsits, R.R.1    Letsch, H.2    Hertel, J.3    Misof, B.4    Stadler, P.F.5
  • 118
    • 79958166117 scopus 로고    scopus 로고
    • Boulder Alignment Editor (ALE): a web-based RNA alignment tool
    • Stombaugh J., Widmann J., McDonald D., Knight R. Boulder Alignment Editor (ALE): a web-based RNA alignment tool. Bioinformatics 2011, 27:1706-1707.
    • (2011) Bioinformatics , vol.27 , pp. 1706-1707
    • Stombaugh, J.1    Widmann, J.2    McDonald, D.3    Knight, R.4
  • 121
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Sinauer Associates, Sunderland, D.M. Hillis, C. Moritz, B.K. Mable (Eds.)
    • Swofford D.L., Olsen G.J., Waddell P.J., Hillis D.M. Phylogenetic inference. Molecular Systematics 1996, 407-514. Sinauer Associates, Sunderland. second ed. D.M. Hillis, C. Moritz, B.K. Mable (Eds.).
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 122
    • 0033533711 scopus 로고    scopus 로고
    • Testing the phylogenetic stability of early tetrapods
    • Thorley J.L., Wilkinson M. Testing the phylogenetic stability of early tetrapods. J. Theor. Biol. 1999, 200:343-344.
    • (1999) J. Theor. Biol. , vol.200 , pp. 343-344
    • Thorley, J.L.1    Wilkinson, M.2
  • 123
    • 0027309533 scopus 로고
    • Rates and patterns of base change in the small subunit ribosomal RNA gene
    • Vawter L., Brown W.M. Rates and patterns of base change in the small subunit ribosomal RNA gene. Genetics 1993, 134:597-608.
    • (1993) Genetics , vol.134 , pp. 597-608
    • Vawter, L.1    Brown, W.M.2
  • 125
    • 34548565934 scopus 로고    scopus 로고
    • Added resolution among ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with complete small and large subunit nuclear ribosomal RNA genes
    • Waeschenbach A., Webster B.L., Bray R.A., Littlewood D.T.J. Added resolution among ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with complete small and large subunit nuclear ribosomal RNA genes. Mol. Phylogenet. Evol. 2007, 45:311-325.
    • (2007) Mol. Phylogenet. Evol. , vol.45 , pp. 311-325
    • Waeschenbach, A.1    Webster, B.L.2    Bray, R.A.3    Littlewood, D.T.J.4
  • 126
    • 64549124256 scopus 로고    scopus 로고
    • First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy
    • Waeschenbach A., Cox C.J., Littlewood D.T.J., Porter J.S., Taylor P.D. First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy. Mol. Phylogenet. Evol. 2009, 52:241-251.
    • (2009) Mol. Phylogenet. Evol. , vol.52 , pp. 241-251
    • Waeschenbach, A.1    Cox, C.J.2    Littlewood, D.T.J.3    Porter, J.S.4    Taylor, P.D.5
  • 128
    • 84859807432 scopus 로고    scopus 로고
    • Adding resolution to ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with large fragments of mtDNA
    • Waeschenbach A., Webster B.L., Littlewood D.T.J. Adding resolution to ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with large fragments of mtDNA. Mol. Phylogenet. Evol. 2012, 63:834-847.
    • (2012) Mol. Phylogenet. Evol. , vol.63 , pp. 834-847
    • Waeschenbach, A.1    Webster, B.L.2    Littlewood, D.T.J.3
  • 129
    • 34548514829 scopus 로고    scopus 로고
    • Dismissal of Acoelomorpha: Acoela and Nemertodermatida are separate early bilaterian clades
    • Wallberg A., Curini-Galletti M., Ahmadzadeh A., Jondelius U. Dismissal of Acoelomorpha: Acoela and Nemertodermatida are separate early bilaterian clades. Zool. Scr. 2007, 36:509-523.
    • (2007) Zool. Scr. , vol.36 , pp. 509-523
    • Wallberg, A.1    Curini-Galletti, M.2    Ahmadzadeh, A.3    Jondelius, U.4
  • 130
    • 0036097948 scopus 로고    scopus 로고
    • Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data
    • Winchell C.J., Sullivan J., Cameron C.B., Swalla B.J., Mallatt J. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol. Biol. Evol. 2002, 19:762-776.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 762-776
    • Winchell, C.J.1    Sullivan, J.2    Cameron, C.B.3    Swalla, B.J.4    Mallatt, J.5
  • 131
    • 1642506104 scopus 로고    scopus 로고
    • Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes
    • Winchell C.J., Martin A.P., Mallatt J. Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes. Mol. Phylogenet. Evol. 2004, 31:214-224.
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 214-224
    • Winchell, C.J.1    Martin, A.P.2    Mallatt, J.3
  • 132
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • Wuyts J., Van de Peer Y., De Wachter R. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucl. Acids. Res. 2001, 29:5017-5028.
    • (2001) Nucl. Acids. Res. , vol.29 , pp. 5017-5028
    • Wuyts, J.1    Van de Peer, Y.2    De Wachter, R.3
  • 133
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl D., Hillis D. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 2002, 51:588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.1    Hillis, D.2


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