-
1
-
-
35549004515
-
Semiautomated improvement of RNAalignments
-
Andersen,E.S. et al. (2007) Semiautomated improvement of RNAalignments. RNA, 13, 1850-1859.
-
(2007)
RNA
, vol.13
, pp. 1850-1859
-
-
Andersen, E.S.1
-
2
-
-
0344298926
-
The ribonuclease P database
-
Brown,J.W. (1999) The ribonuclease P database. Nucleic Acids Res., 27, 314.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 314
-
-
Brown, J.W.1
-
3
-
-
69049103112
-
The RNA structure alignment ontology
-
Brown,J.W. et al. (2009) The RNA structure alignment ontology. RNA, 15, 1623-1631.
-
(2009)
RNA
, vol.15
, pp. 1623-1631
-
-
Brown, J.W.1
-
4
-
-
1342288004
-
The Jalview Java alignment editor
-
Clamp,M. et al. (2004) The Jalview Java alignment editor. Bioinformatics, 20, 426-427.
-
(2004)
Bioinformatics
, vol.20
, pp. 426-427
-
-
Clamp, M.1
-
5
-
-
67650727366
-
VARNA: interactive drawing and editing of the RNA secondary structure
-
Darty, K. et al. (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics, 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
-
6
-
-
13444309635
-
RALEE-RNA ALignment editor in Emacs
-
Griffiths-Jones,S. (2005) RALEE-RNA ALignment editor in Emacs. Bioinformatics, 21, 257-259.
-
(2005)
Bioinformatics
, vol.21
, pp. 257-259
-
-
Griffiths-Jones, S.1
-
7
-
-
0037252684
-
Rfam: an RNA family database
-
Griffiths-Jones,S. et al. (2003) Rfam: an RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
-
8
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall,T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser., 41, 95-98.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
9
-
-
25144458057
-
Sequence to structure (S2S): display, manipulate and interconnect RNA data from sequence to structure
-
Jossinet,F. and Westhof,E. (2005) Sequence to structure (S2S): display, manipulate and interconnect RNA data from sequence to structure. Bioinformatics, 21, 3320-3321.
-
(2005)
Bioinformatics
, vol.21
, pp. 3320-3321
-
-
Jossinet, F.1
Westhof, E.2
-
10
-
-
58149191272
-
tRNAdb 2009:compilation of tRNAsequences and tRNAgenes
-
Juhling,F. et al. (2009) tRNAdb 2009: compilation of tRNAsequences and tRNAgenes, Nucleic Acids Res., 37, D159-D162.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Juhling, F.1
-
11
-
-
34748893838
-
PyCogent: a toolkit for making sense from sequence
-
Knight,R. et al. (2007) PyCogent: a toolkit for making sense from sequence, Genome Biol., 8, R171.
-
(2007)
Genome Biol.
, vol.8
-
-
Knight, R.1
-
12
-
-
0037102491
-
The non-Watson-Crick base pairs and their associated isostericity matrices
-
Leontis,N.B. et al. (2002) The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res., 30, 3497-3531.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3497-3531
-
-
Leontis, N.B.1
-
13
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis,N.B. and Westhof,E. (2001) Geometric nomenclature and classification of RNA base pairs. RNA, 7, 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
14
-
-
65249095696
-
RNA 3D structural motifs: definition, identification, annotation, and database searching
-
Walter,N.G. et al. (eds), Springer, Berlin Heidelberg
-
Nasalean,L. et al. (2009) RNA 3D structural motifs: definition, identification, annotation, and database searching. In Walter,N.G. et al. (eds) Non-Protein Coding RNAs. Springer, Berlin Heidelberg, pp. 1-26.
-
(2009)
Non-Protein Coding RNAs
, pp. 1-26
-
-
Nasalean, L.1
-
15
-
-
65549111754
-
Infernal 1 0: inference of RNA alignments
-
Nawrocki,E.P. et al. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
-
16
-
-
33749442647
-
MultiSeq: unifying sequence and structure data for evolutionary analysis
-
Roberts,E. et al. (2006) MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinformatics, 7, 382.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 382
-
-
Roberts, E.1
-
17
-
-
63249135361
-
RNA structure prediction from evolutionary patterns of nucleotide composition
-
Smit,S. et al. (2009) RNA structure prediction from evolutionary patterns of nucleotide composition. Nucleic Acids Res., 37, 1378-1386.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1378-1386
-
-
Smit, S.1
-
18
-
-
65549163541
-
Frequency and isostericity of RNAbase pairs
-
Stombaugh,J. et al. (2009) Frequency and isostericity of RNAbase pairs. Nucleic Acids Res., 37, 2294-2312.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2294-2312
-
-
Stombaugh, J.1
|