-
1
-
-
0016829616
-
The architecture of 5S rRNA and its relation to function
-
Fox,G.E. and Woese,C.R. (1975) The architecture of 5S rRNA and its relation to function. J. Mol. Evol., 6, 61-76.
-
(1975)
J. Mol. Evol
, vol.6
, pp. 61-76
-
-
Fox, G.E.1
Woese, C.R.2
-
2
-
-
0028261409
-
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell,R.R., Larsen,N. and Woese,C.R. (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev., 58, 10-26.
-
(1994)
Microbiol. Rev
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
3
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
Noller,H.F., Hoffarth,V. and Zimniak,L. (1992) Unusual resistance of peptidyl transferase to protein extraction procedures. Science, 256, 1416-1419.
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
4
-
-
36849148382
-
Origin of life: The RNA world
-
Gilbert,W. (1986) Origin of life: The RNA world. Nature, 319 618.
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
5
-
-
0030970582
-
23S rRNA similarity from selection for peptidyl transferase mimicry
-
Welch,M., Majerfeld,I. and Yarus,M. (1997) 23S rRNA similarity from selection for peptidyl transferase mimicry. Biochemistry, 36 6614-6623.
-
(1997)
Biochemistry
, vol.36
, pp. 6614-6623
-
-
Welch, M.1
Majerfeld, I.2
Yarus, M.3
-
6
-
-
0033781246
-
Peptidyl transferase: Ancient and exiguous
-
Yarus,M. and Welch,M. (2000) Peptidyl transferase: Ancient and exiguous. Chem. Biol., 7, R187-R190.
-
(2000)
Chem. Biol
, vol.7
-
-
Yarus, M.1
Welch, M.2
-
7
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace,N.R. (1997) A molecular view of microbial diversity and the biosphere. Science, 276, 734-740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
8
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzell,T. and Corbin,K.W. (1971) Fitting discrete probability distributions to evolutionary events. Science, 172, 1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
9
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of tetra-loops
-
Woese,C.R., Winker,S. and Gutell,R.R. (1990) Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops". Proc. Natl. Acad. Sci. USA, 87, 8467-8471.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 8467-8471
-
-
Woese, C.R.1
Winker, S.2
Gutell, R.R.3
-
10
-
-
0018936473
-
Secondary structure model for bacterial 16S ribosomal RNA: Phylogenetic, enzymatic and chemical evidence
-
Woese,C.R., Magrum,L.J., Gupta,R., Siegel,R.B., Stahl,D.A., Kop,J., Crawford,N., Brosius,J., Gutell,R. et al. (1980) Secondary structure model for bacterial 16S ribosomal RNA: Phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res., 8, 2275-2293.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 2275-2293
-
-
Woese, C.R.1
Magrum, L.J.2
Gupta, R.3
Siegel, R.B.4
Stahl, D.A.5
Kop, J.6
Crawford, N.7
Brosius, J.8
Gutell, R.9
-
11
-
-
0019888579
-
Secondary structure model for 23S ribosomal RNA
-
Noller,H.F., Kop,J., Wheaton,V., Brosius,J., Gutell,R.R., Kopylov,A.M., Dohme,F., Herr,W., Stahl,D.A. et al. (1981) Secondary structure model for 23S ribosomal RNA. Nucleic. Acids. Res., 9, 6167-6189.
-
(1981)
Nucleic. Acids. Res
, vol.9
, pp. 6167-6189
-
-
Noller, H.F.1
Kop, J.2
Wheaton, V.3
Brosius, J.4
Gutell, R.R.5
Kopylov, A.M.6
Dohme, F.7
Herr, W.8
Stahl, D.A.9
-
12
-
-
0029091043
-
Estimating substitution rates in ribosomal RNA genes
-
Rzhetsky,A. (1995) Estimating substitution rates in ribosomal RNA genes. Genetics, 141, 771-783.
-
(1995)
Genetics
, vol.141
, pp. 771-783
-
-
Rzhetsky, A.1
-
13
-
-
0029789623
-
A quantitative map of nucleotide substitution rates in bacterial rRNA
-
Van de Peer,Y., Chapelle,S. and De Wachter,R. (1996) A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res., 24, 3381-3391.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3381-3391
-
-
Van de Peer, Y.1
Chapelle, S.2
De Wachter, R.3
-
14
-
-
0030759786
-
Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence
-
Schultes,E., Hraber,P.T. and LaBean,T.H. (1997) Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence. RNA, 3, 792-806.
-
(1997)
RNA
, vol.3
, pp. 792-806
-
-
Schultes, E.1
Hraber, P.T.2
LaBean, T.H.3
-
15
-
-
0031691532
-
Limitations of metazoan 18S rRNA sequence data: Implications for reconstructing a phylogeny of the animal kingdom and inferring the reality of the Cambrian explosion
-
Abouheif,E., Zardoya,R. and Meyer,A. (1998) Limitations of metazoan 18S rRNA sequence data: Implications for reconstructing a phylogeny of the animal kingdom and inferring the reality of the Cambrian explosion. J. Mol. Evol., 47, 394-405.
-
(1998)
J. Mol. Evol
, vol.47
, pp. 394-405
-
-
Abouheif, E.1
Zardoya, R.2
Meyer, A.3
-
16
-
-
0032902335
-
Phylogeny of organisms investigated by the base-pair changes in the stem regions of small and large ribosomal subunit RNAs
-
Otsuka,J., Terai,G. and Nakano,T. (1999) Phylogeny of organisms investigated by the base-pair changes in the stem regions of small and large ribosomal subunit RNAs. J. Mol. Evol., 48, 218-235.
-
(1999)
J. Mol. Evol
, vol.48
, pp. 218-235
-
-
Otsuka, J.1
Terai, G.2
Nakano, T.3
-
17
-
-
0345518003
-
Construction of a variability map for eukaryotic large subunit ribosomal RNA
-
Ben Ali,A., Wuyts,J., De Wachter,R., Meyer,A. and Van de Peer,Y. (1999) Construction of a variability map for eukaryotic large subunit ribosomal RNA. Nucleic Acids Res., 27, 2825-2831.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2825-2831
-
-
Ben Ali, A.1
Wuyts, J.2
De Wachter, R.3
Meyer, A.4
Van de Peer, Y.5
-
18
-
-
0036606141
-
Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes
-
Wang,H.-C. and Hickey,D.A. (2002) Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes. Nucleic Acids Res., 30, 2501-2507.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2501-2507
-
-
Wang, H.-C.1
Hickey, D.A.2
-
19
-
-
0028512129
-
A stochastic model for the evolution of autocorrelated DNA sequences
-
Schöniger, M. and von Haeseler, A. (1994) A stochastic model for the evolution of autocorrelated DNA sequences. Mol. Phylogenet. Evol., 3, 240-247.
-
(1994)
Mol. Phylogenet. Evol
, vol.3
, pp. 240-247
-
-
Schöniger, M.1
von Haeseler, A.2
-
20
-
-
0028900996
-
Evolutionary analyses of DNA sequences subject to constraints of secondary structure
-
Muse,S.V. (1995) Evolutionary analyses of DNA sequences subject to constraints of secondary structure. Genetics, 139, 1429-1439.
-
(1995)
Genetics
, vol.139
, pp. 1429-1439
-
-
Muse, S.V.1
-
21
-
-
0028874337
-
Neighbor-joining and maximum likelihood with RNA Sequences: Addressing the inter-dependence of sites
-
Tillier,E.R.M. and Collins,R.A. (1995) Neighbor-joining and maximum likelihood with RNA Sequences: Addressing the inter-dependence of sites. Mol. Biol. Evol., 12, 7-15.
-
(1995)
Mol. Biol. Evol
, vol.12
, pp. 7-15
-
-
Tillier, E.R.M.1
Collins, R.A.2
-
22
-
-
0031894830
-
-
Tillier,E.R.M. and Collins,R.A. (1998) High apparent rate of simultaneous compensatory base-pair substitutions in ribosomal RNA. Genetics, 148, 1993-2002.
-
Tillier,E.R.M. and Collins,R.A. (1998) High apparent rate of simultaneous compensatory base-pair substitutions in ribosomal RNA. Genetics, 148, 1993-2002.
-
-
-
-
23
-
-
0028136449
-
Maximum likelihood with multiparameter models of substitution
-
Tillier,E.R.M. (1994) Maximum likelihood with multiparameter models of substitution. J. Mol. Evol., 39, 409-417.
-
(1994)
J. Mol. Evol
, vol.39
, pp. 409-417
-
-
Tillier, E.R.M.1
-
24
-
-
0034522921
-
RNA secondary structure: Physical and computational aspects
-
Higgs,P.G. (2000) RNA secondary structure: Physical and computational aspects. Q. Rev. Biophys., 33, 199-253.
-
(2000)
Q. Rev. Biophys
, vol.33
, pp. 199-253
-
-
Higgs, P.G.1
-
25
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis,N.B. and Westhof,E. (2001) Geometric nomenclature and classification of RNA base pairs. RNA, 7, 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
26
-
-
0023672228
-
Paired sequence difference in ribosomal RNAs: Evolutionary and phylogenetic implications
-
Wheeler,W.C. and Honeycutt,R.L. (1988) Paired sequence difference in ribosomal RNAs: Evolutionary and phylogenetic implications. Mol. Biol. Evol., 5, 90-96.
-
(1988)
Mol. Biol. Evol
, vol.5
, pp. 90-96
-
-
Wheeler, W.C.1
Honeycutt, R.L.2
-
27
-
-
4243559860
-
Compensatory neutral mutations and the evolution of RNA
-
Higgs,P.G. (1998) Compensatory neutral mutations and the evolution of RNA. Genetica, 102-103, 91-101.
-
(1998)
Genetica
, vol.102-103
, pp. 91-101
-
-
Higgs, P.G.1
-
28
-
-
0031213875
-
Crystals by design: A strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron
-
Golden,B.L., Podell,E.R., Gooding,A.R. and Cech,T.R. (1997) Crystals by design: A strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron. J. Mol. Biol., 270, 711-723.
-
(1997)
J. Mol. Biol
, vol.270
, pp. 711-723
-
-
Golden, B.L.1
Podell, E.R.2
Gooding, A.R.3
Cech, T.R.4
-
29
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone,J.J., Subramanian,S., Schnare,M.N., Collett,J.R., D'Souza,L.M., Du,Y., Feng,B., Lin,N., Madabusi,L.V. et al. (2002) The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics, 3, 2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
-
30
-
-
29844452150
-
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
-
Smit,S., Yarus,M. and Knight,R. (2006) Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. RNA, 12, 1-14.
-
(2006)
RNA
, vol.12
, pp. 1-14
-
-
Smit, S.1
Yarus, M.2
Knight, R.3
-
31
-
-
0013596021
-
The guanine and cytosine content of genomic DNA and bacterial evolution
-
Muto,A. and Osawa,S. (1987) The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. USA, 84, 166-169.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 166-169
-
-
Muto, A.1
Osawa, S.2
-
32
-
-
0035220937
-
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
-
RESEARCH0010
-
Knight,R.D., Freeland,S.J. and Landweber,L.F. (2001) A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol., 2, RESEARCH0010.
-
(2001)
Genome Biol
, vol.2
-
-
Knight, R.D.1
Freeland, S.J.2
Landweber, L.F.3
-
33
-
-
0027309533
-
Rates and patterns of base change in the small subunit ribosomal RNA gene
-
Vawter,L. and Brown,W.M. (1993) Rates and patterns of base change in the small subunit ribosomal RNA gene. Genetics, 134, 597-608.
-
(1993)
Genetics
, vol.134
, pp. 597-608
-
-
Vawter, L.1
Brown, W.M.2
-
34
-
-
0035798380
-
Structure of the 80S ribosome from Saccharomyces cerevisiae tRNA-ribosome and subunit-subunit interactions
-
Spahn,C.M., Beckmann,R., Eswar,N., Penczek,P.A., Sali,A., Blobel,G. and Frank,J. (2001) Structure of the 80S ribosome from Saccharomyces cerevisiae tRNA-ribosome and subunit-subunit interactions. Cell, 107, 373-386.
-
(2001)
Cell
, vol.107
, pp. 373-386
-
-
Spahn, C.M.1
Beckmann, R.2
Eswar, N.3
Penczek, P.A.4
Sali, A.5
Blobel, G.6
Frank, J.7
-
35
-
-
0037133957
-
Structure and function of the eukaryotic ribosome: The next frontier
-
Doudna,J.A. and Rath,V.L. (2002) Structure and function of the eukaryotic ribosome: The next frontier. Cell, 109, 153-156.
-
(2002)
Cell
, vol.109
, pp. 153-156
-
-
Doudna, J.A.1
Rath, V.L.2
-
36
-
-
0035945246
-
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
-
Wuyts, J., Van de Peer, Y. and De Wachter, R. (2001) Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids Res., 29, 5017-5028.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 5017-5028
-
-
Wuyts, J.1
Van de Peer, Y.2
De Wachter, R.3
-
37
-
-
0004962792
-
Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli
-
Brosius,J., Dull,T.J. and Noller,H.F. (1980) Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA, 77, 201-204.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 201-204
-
-
Brosius, J.1
Dull, T.J.2
Noller, H.F.3
-
38
-
-
1842362290
-
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
-
Brosius,J., Palmer,M.L., Kennedy,P.J. and Noller,H.F. (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA, 75, 4801-4805.
-
(1978)
Proc. Natl. Acad. Sci. USA
, vol.75
, pp. 4801-4805
-
-
Brosius, J.1
Palmer, M.L.2
Kennedy, P.J.3
Noller, H.F.4
-
39
-
-
0346494979
-
The European ribosomal RNA database
-
Wuyts,J., Perriere,G. and Van De Peer,Y. (2004) The European ribosomal RNA database. Nucleic Acids Res., 32, D101-D103.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Wuyts, J.1
Perriere, G.2
Van De Peer, Y.3
-
40
-
-
0019119401
-
Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli
-
Stiegler,P., Carbon,P., Zuker,M., Ebel,J.P. and Ehresmann,C. (1980) Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli. C. R. Seances Acad. Sci. D., 291, 937-940.
-
(1980)
C. R. Seances Acad. Sci. D
, vol.291
, pp. 937-940
-
-
Stiegler, P.1
Carbon, P.2
Zuker, M.3
Ebel, J.P.4
Ehresmann, C.5
-
41
-
-
0019878165
-
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species
-
Zwieb,C., Glotz,C. and Brimacombe,R. (1981) Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res., 9, 3621-3640.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 3621-3640
-
-
Zwieb, C.1
Glotz, C.2
Brimacombe, R.3
-
42
-
-
0019830772
-
Secondary structure of 16S ribosomal RNA
-
Noller,H.F. and Woese,C.R. (1981) Secondary structure of 16S ribosomal RNA. Science, 212, 403-411.
-
(1981)
Science
, vol.212
, pp. 403-411
-
-
Noller, H.F.1
Woese, C.R.2
-
43
-
-
0019786340
-
Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs
-
Branlant,C., Krol,A., Machatt,M.A., Pouyet,J., Ebel,J.P., Edwards,K. and Kossel,H. (1981) Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs. Nucleic Acids Res., 9, 4303-4324.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 4303-4324
-
-
Branlant, C.1
Krol, A.2
Machatt, M.A.3
Pouyet, J.4
Ebel, J.P.5
Edwards, K.6
Kossel, H.7
-
44
-
-
0019887387
-
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes
-
Glotz,C., Zwieb,C., Brimacombe,R., Edwards,K. and Kossel,H. (1981) Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes. Nucleic Acids Res., 9, 3287-3306.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 3287-3306
-
-
Glotz, C.1
Zwieb, C.2
Brimacombe, R.3
Edwards, K.4
Kossel, H.5
-
45
-
-
0025191217
-
Higher order structural elements in ribosomal RNAs: Pseudo-knots and the use of noncanonical pairs
-
Gutell,R.R. and Woese,C.R. (1990) Higher order structural elements in ribosomal RNAs: Pseudo-knots and the use of noncanonical pairs. Proc. Natl. Acad. Sci. USA, 87, 663-667.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 663-667
-
-
Gutell, R.R.1
Woese, C.R.2
-
46
-
-
0024591793
-
Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA
-
Haselman,T., Camp,D.G. and Fox,G.E. (1989) Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA. Nucleic Acids Res. 17, 2215-2221.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 2215-2221
-
-
Haselman, T.1
Camp, D.G.2
Fox, G.E.3
-
47
-
-
0024343769
-
Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA
-
Haselman,T., Gutell,R.R., Jurka,J. and Fox,G.E. (1989) Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA. J. Biomol. Struct. Dyn., 7, 181-186.
-
(1989)
J. Biomol. Struct. Dyn
, vol.7
, pp. 181-186
-
-
Haselman, T.1
Gutell, R.R.2
Jurka, J.3
Fox, G.E.4
-
48
-
-
0027225783
-
A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993
-
Gutell,R.R., Gray,M.W. and Schnare,M.N. (1993) A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993. Nucleic Acids Res., 21, 3055-3074.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3055-3074
-
-
Gutell, R.R.1
Gray, M.W.2
Schnare, M.N.3
-
49
-
-
0026750549
-
Higher order interactions in 23S rRNA
-
Larsen,N. (1992) Higher order interactions in 23S rRNA. Proc. Natl. Acad. Sci. USA, 89, 5044-5048.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 5044-5048
-
-
Larsen, N.1
-
50
-
-
0021760749
-
Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs
-
Nelles,L., Fang,B.L., Volckaert,G., Vandenberghe,A. and De Wachter,R. (1984) Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs. Nucleic Acids Res., 12, 8749-8768.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 8749-8768
-
-
Nelles, L.1
Fang, B.L.2
Volckaert, G.3
Vandenberghe, A.4
De Wachter, R.5
-
51
-
-
0022604708
-
Compilation of small ribosomal subunit RNA sequences
-
Huysmans,E. and De Wachter,R. (1986) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res., 14(Suppl), r73-r118.
-
(1986)
Nucleic Acids Res
, vol.14
, Issue.SUPPL.
-
-
Huysmans, E.1
De Wachter, R.2
-
52
-
-
0023717942
-
Compilation of small ribosomal subunit RNA sequences
-
Dams,E., Hendriks,L., Van de Peer,Y., Neefs,J.M., Smits,G., Vandenbempt,I. and De Wachter,R. (1988) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res., 16(Suppl), r87-r173.
-
(1988)
Nucleic Acids Res
, vol.16
, Issue.SUPPL.
-
-
Dams, E.1
Hendriks, L.2
Van de Peer, Y.3
Neefs, J.M.4
Smits, G.5
Vandenbempt, I.6
De Wachter, R.7
-
53
-
-
0025906879
-
Compilation of small ribosomal subunit RNA sequences
-
Neefs,J.M., Van de Peer,Y., De Rijk,P., Goris,A. and De Wachter,R. (1991) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res., 19(Suppl), 1987-2015.
-
(1991)
Nucleic Acids Res
, vol.19
, Issue.SUPPL.
, pp. 1987-2015
-
-
Neefs, J.M.1
Van de Peer, Y.2
De Rijk, P.3
Goris, A.4
De Wachter, R.5
-
54
-
-
0025326727
-
Compilation of small ribosomal subunit RNA sequences
-
Neefs,J.M., Van de Peer,Y., Hendriks,L. and De Wachter,R. (1990) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res., 18(Suppl), 2237-2317.
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.SUPPL.
, pp. 2237-2317
-
-
Neefs, J.M.1
Van de Peer, Y.2
Hendriks, L.3
De Wachter, R.4
-
55
-
-
0026579480
-
Compilation of small ribosomal subunit RNA sequences
-
De Rijk,P., Neefs,J.M., Van de Peer,Y. and De Wachter,R. (1992) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res., 20(Suppl), 2075-2089.
-
(1992)
Nucleic Acids Res
, vol.20
, Issue.SUPPL.
, pp. 2075-2089
-
-
De Rijk, P.1
Neefs, J.M.2
Van de Peer, Y.3
De Wachter, R.4
-
56
-
-
0027161934
-
Compilation of small ribosomal subunit RNA structures
-
Neefs,J.M., Van de Peer,Y., De Rijk,P., Chapelle,S. and De Wachter,R. (1993) Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res., 21, 3025-3049.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3025-3049
-
-
Neefs, J.M.1
Van de Peer, Y.2
De Rijk, P.3
Chapelle, S.4
De Wachter, R.5
-
57
-
-
0029965428
-
Database on the structure of small ribosomal subunit RNA
-
Van de Peer,Y., Nicolai,S., De Rijk,P. and De Wachter,R. (1996) Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res. 24, 86-91.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 86-91
-
-
Van de Peer, Y.1
Nicolai, S.2
De Rijk, P.3
De Wachter, R.4
-
58
-
-
0027969247
-
Database on the structure of small ribosomal subunit RNA
-
Van de Peer,Y., Van den Broeck,I., De Rijk,P. and De Wachter,R. (1994) Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res., 22, 3488-3494.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3488-3494
-
-
Van de Peer, Y.1
Van den Broeck, I.2
De Rijk, P.3
De Wachter, R.4
-
59
-
-
0022470564
-
Rapid chemical probing of conformation in 16S ribosomal RNA and 30S ribosomal subunits using primer extension
-
Moazed,D., Stern,S. and Noller,H.F. (1986) Rapid chemical probing of conformation in 16S ribosomal RNA and 30S ribosomal subunits using primer extension. J. Mol. Biol., 187, 399-416.
-
(1986)
J. Mol. Biol
, vol.187
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
60
-
-
0036600570
-
The accuracy of ribosomal RNA comparative structure models
-
Gutell,R.R., Lee,J.C. and Cannone,J.J. (2002) The accuracy of ribosomal RNA comparative structure models. Curr. Opin. Struct. Biol., 12 301-310.
-
(2002)
Curr. Opin. Struct. Biol
, vol.12
, pp. 301-310
-
-
Gutell, R.R.1
Lee, J.C.2
Cannone, J.J.3
-
61
-
-
0034554835
-
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
-
Wuyts,J., De Rijk,P., Van de Peer,Y., Pison,G., Rousseeuw,P. and De Wachter,R. (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res., 28, 4698-4708.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4698-4708
-
-
Wuyts, J.1
De Rijk, P.2
Van de Peer, Y.3
Pison, G.4
Rousseeuw, P.5
De Wachter, R.6
-
62
-
-
0345059376
-
Announcing the worldwide Protein Data Bank
-
Berman,H., Henrick,K. and Nakamura,H. (2003) Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10, 980.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 980
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
-
63
-
-
0017751668
-
The Protein Data Bank. A computer-based archival file for macromolecular structures
-
Bernstein,F.C., Koetzle,T.F., Williams,G.J., Meyer,E.F.Jr, Brice,M.D., Rodgers,J.R., Kennard,O., Shimanouchi,T. and Tasumi,M. (1977) The Protein Data Bank. A computer-based archival file for macromolecular structures. Eur. J. Biochem., 80, 319-324.
-
(1977)
Eur. J. Biochem
, vol.80
, pp. 319-324
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer Jr, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
64
-
-
0018129723
-
Computer method for predicting the secondary structure of single-stranded RNA
-
Studnicka,G.M., Rahn,G.M., Cummings,I.W. and Salser,W.A. (1978) Computer method for predicting the secondary structure of single-stranded RNA. Nucleic Acids Res., 5, 3365-3387.
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 3365-3387
-
-
Studnicka, G.M.1
Rahn, G.M.2
Cummings, I.W.3
Salser, W.A.4
-
65
-
-
0027313056
-
Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the molecular clock
-
Van de Peer,Y., Neefs,J.M., De Rijk,P. and De Wachter,R. (1993) Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the molecular clock. J. Mol. Evol., 37, 221-232.
-
(1993)
J. Mol. Evol
, vol.37
, pp. 221-232
-
-
Van de Peer, Y.1
Neefs, J.M.2
De Rijk, P.3
De Wachter, R.4
-
66
-
-
0029989451
-
The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA
-
Van de Peer,Y., Van der Auwera,G. and De Wachter,R. (1996) The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J. Mol. Evol., 42 201-210.
-
(1996)
J. Mol. Evol
, vol.42
, pp. 201-210
-
-
Van de Peer, Y.1
Van der Auwera, G.2
De Wachter, R.3
-
67
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar,R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
68
-
-
0023469022
-
Evolution of anticodons: Variations in the genetic code
-
Jukes,T.H., Osawa,S., Muto,A. and Lehman,N. (1987) Evolution of anticodons: Variations in the genetic code. Cold Spring Harb. Symp. Quant. Biol., 52, 769-776.
-
(1987)
Cold Spring Harb. Symp. Quant. Biol
, vol.52
, pp. 769-776
-
-
Jukes, T.H.1
Osawa, S.2
Muto, A.3
Lehman, N.4
-
69
-
-
0033607003
-
Placement of protein and RNA structures into a 5Å-resolution map of the 50S ribosomal subunit
-
Ban,N., Nissen,P., Hansen,J., Capel,M., Moore,P.B. and Steitz,T.A. (1999) Placement of protein and RNA structures into a 5Å-resolution map of the 50S ribosomal subunit. Nature, 400, 841-847.
-
(1999)
Nature
, vol.400
, pp. 841-847
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Capel, M.4
Moore, P.B.5
Steitz, T.A.6
-
70
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4Å resolution
-
Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4Å resolution. Science, 289, 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
71
-
-
0032881809
-
X-ray crystal structures of 70S ribosome functional complexes
-
Cate,J.H., Yusupov,M.M., Yusupova,G.Z., Earnest,T.N. and Noller,H.F. (1999) X-ray crystal structures of 70S ribosome functional complexes. Science, 285, 2095-2104.
-
(1999)
Science
, vol.285
, pp. 2095-2104
-
-
Cate, J.H.1
Yusupov, M.M.2
Yusupova, G.Z.3
Earnest, T.N.4
Noller, H.F.5
-
72
-
-
0344809971
-
Structure of a bacterial 30S ribosomal subunit at 5.5Å resolution
-
Clemons,W.M.Jr, May,J.L., Wimberly,B.T., McCutcheon,J.P., Capel,M.S. and Ramakrishnan,V. (1999) Structure of a bacterial 30S ribosomal subunit at 5.5Å resolution. Nature, 400, 833-840.
-
(1999)
Nature
, vol.400
, pp. 833-840
-
-
Clemons Jr, W.M.1
May, J.L.2
Wimberly, B.T.3
McCutcheon, J.P.4
Capel, M.S.5
Ramakrishnan, V.6
-
73
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5Å resolution
-
Schuwirth,B.S., Borovinskaya,M.A., Hau,C.W., Zhang,W., Vila-Sanjurjo,A., Holton,J.M. and Dounda Cate,J.H. (2005) Structures of the bacterial ribosome at 3.5Å resolution. Science, 310, 827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Dounda Cate, J.H.7
-
74
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly,B.T., Brodersen,D.E., Clemons,W.M.Jr, Morgan-Warren,R.J., Carter,A.P., Vonrhein,C., Hartsch,T. and Ramakrishnan,V. (2000) Structure of the 30S ribosomal subunit. Nature, 407, 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr, W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
75
-
-
0035805213
-
Crystal structure of the ribosome at 5.5Å resolution
-
Yusupov,M.M., Yusupova,G.Z., Baucom,A., Lieberman,K., Earnest,T.N., Cate,J.H. and Noller,H.F. (2001) Crystal structure of the ribosome at 5.5Å resolution. Science, 292, 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
76
-
-
33644674742
-
Ribosomal crystallography: Peptide bond formation, chaperone assistance and antibiotics activity
-
Yonath,A. (2005) Ribosomal crystallography: Peptide bond formation, chaperone assistance and antibiotics activity. Mol. Cells, 20 1-16.
-
(2005)
Mol. Cells
, vol.20
, pp. 1-16
-
-
Yonath, A.1
-
77
-
-
33845653671
-
Soil to genomics: The streptomyces chromosome
-
Hopwood,D.A. (2006) Soil to genomics: The streptomyces chromosome. Annu. Rev. Genet., 40, 1-23.
-
(2006)
Annu. Rev. Genet
, vol.40
, pp. 1-23
-
-
Hopwood, D.A.1
-
78
-
-
0036324293
-
Phylogenetic approaches for describing and comparing the diversity of microbial communities
-
Martin,A.P. (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Microbiol., 68, 3673-3682.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 3673-3682
-
-
Martin, A.P.1
-
79
-
-
0036084598
-
-
SzymanskiM., BarciszewskaM.Z., ErdmannV.A., and BarciszewskiJ. (2002) 5S Ribosomal RNA Database. Nucleic Acids Res, 30, 176-178.
-
SzymanskiM., BarciszewskaM.Z., ErdmannV.A., and BarciszewskiJ. (2002) 5S Ribosomal RNA Database. Nucleic Acids Res, 30, 176-178.
-
-
-
-
80
-
-
0030862608
-
Database on the structure of small ribosomal submit RNA
-
Van de Peer,Y., Jansen,J., De Rijk,P. and De Wachter,R. (1997) Database on the structure of small ribosomal submit RNA. Nucleic Acids Res. 25, 111-116.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 111-116
-
-
Van de Peer, Y.1
Jansen, J.2
De Rijk, P.3
De Wachter, R.4
|