메뉴 건너뛰기




Volumn 23, Issue 9, 2006, Pages 1792-1800

Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades

Author keywords

Accelerated evolution; Nematode evolution; SSU rDNA

Indexed keywords

NUCLEOTIDE; RIBOSOME DNA;

EID: 33748158280     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl044     Document Type: Article
Times cited : (949)

References (53)
  • 2
    • 0000571770 scopus 로고    scopus 로고
    • Relationships among nematodes based on the analysis of 18S rRNA gene sequences: Molecular evidence for monophyly of chromadorian and secernentian nematodes
    • Aleshin VV, Kedrova OS, Milyutina IA, Vladychenskaya NS, Petrov NB. 1998. Relationships among nematodes based on the analysis of 18S rRNA gene sequences: molecular evidence for monophyly of chromadorian and secernentian nematodes. Russ J Nematol 6:175-84.
    • (1998) Russ J Nematol , vol.6 , pp. 175-184
    • Aleshin, V.V.1    Kedrova, O.S.2    Milyutina, I.A.3    Vladychenskaya, N.S.4    Petrov, N.B.5
  • 4
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255-66.
    • (2003) Mol Biol Evol , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 8
    • 0034079769 scopus 로고    scopus 로고
    • Patterns and processes in the evolution of animal parasitic nematodes
    • Blaxter M, Dorris M, De Ley P. 2000. Patterns and processes in the evolution of animal parasitic nematodes. Nematology 2:43-55.
    • (2000) Nematology , vol.2 , pp. 43-55
    • Blaxter, M.1    Dorris, M.2    De Ley, P.3
  • 9
    • 0032485270 scopus 로고    scopus 로고
    • A molecular evolutionary framework for the phylum Nematoda
    • Blaxter ML, De Ley P, Garey JR, et al. 1998. A molecular evolutionary framework for the phylum Nematoda. Nature 392:71-5.
    • (1998) Nature , vol.392 , pp. 71-75
    • Blaxter, M.L.1    De Ley, P.2    Garey, J.R.3
  • 10
    • 0025660096 scopus 로고
    • The Maturity Index - An ecological measure of environmental disturbance based on nematode species composition
    • Bongers T. 1990. The Maturity Index - an ecological measure of environmental disturbance based on nematode species composition. Oecologia 83:14-9.
    • (1990) Oecologia , vol.83 , pp. 14-19
    • Bongers, T.1
  • 11
    • 0033151303 scopus 로고    scopus 로고
    • Nematode community structure as a bioindicator in environmental monitoring
    • Bongers T, Ferris H. 1999. Nematode community structure as a bioindicator in environmental monitoring. Trends Ecol Evol 14:224-8.
    • (1999) Trends Ecol Evol , vol.14 , pp. 224-228
    • Bongers, T.1    Ferris, H.2
  • 12
    • 0006023178 scopus 로고
    • The taxonomic position of some teratocephalid nematodes - A scanning electron microscope study
    • Boström S. 1989. The taxonomic position of some teratocephalid nematodes - a scanning electron microscope study. Revue Nematol 12:181-90.
    • (1989) Revue Nematol , vol.12 , pp. 181-190
    • Boström, S.1
  • 13
    • 0141784368 scopus 로고
    • A revised classification of the Nematoda
    • Anonymous, editor. Moscow, Russia: All-Union Lenin Academy of Agricultural Sciences
    • Chitwood BG. 1937. A revised classification of the Nematoda. In: Anonymous, editor. Papers on helminthology, 30 year jubileum K.J. Skrjabin. Moscow, Russia: All-Union Lenin Academy of Agricultural Sciences. p 67-79.
    • (1937) Papers on Helminthology, 30 Year Jubileum K.J. Skrjabin , pp. 67-79
    • Chitwood, B.G.1
  • 14
    • 0000973695 scopus 로고
    • The designation of official names for higher taxa of invertebrates
    • Chitwood BG. 1958. The designation of official names for higher taxa of invertebrates. Bull Zool Nomencl 15:860-95.
    • (1958) Bull Zool Nomencl , vol.15 , pp. 860-895
    • Chitwood, B.G.1
  • 15
  • 16
    • 12644273813 scopus 로고
    • 2 New species of Prismatolaimus de Man, 1880 (Nemata, Prismatolaimidae) in Southern Chile
    • Coomans AV, Raski DJ. 1988. 2 new species of Prismatolaimus De Man, 1880 (Nemata, Prismatolaimidae) in Southern Chile. J Nematol 20:288-303.
    • (1988) J Nematol , vol.20 , pp. 288-303
    • Coomans, A.V.1    Raski, D.J.2
  • 18
    • 0003131773 scopus 로고    scopus 로고
    • Systematic position and phylogeny
    • Lee DL, editor. London: Taylor & Francis
    • De Ley P, Blaxter ML. 2002. Systematic position and phylogeny. In: Lee DL, editor. The biology of nematodes. London: Taylor & Francis. p 1-30.
    • (2002) The Biology of Nematodes , pp. 1-30
    • De Ley, P.1    Blaxter, M.L.2
  • 19
    • 33749450254 scopus 로고    scopus 로고
    • A new system for Nematoda: Combining morphological characters with molecular trees, and translating clades into ranks and taxa
    • Cook R, Hunt DJ, editors. 8-13 june 2002, Tenerife, Spain. Leiden, Netherlands: Brill
    • De Ley P, Blaxter ML. 2004. A new system for Nematoda: combining morphological characters with molecular trees, and translating clades into ranks and taxa. In: Cook R, Hunt DJ, editors. Proceedings of the fourth international congress of nematology, 8-13 june 2002, Tenerife, Spain. Leiden, Netherlands: Brill. 865 p.
    • (2004) Proceedings of the Fourth International Congress of Nematology
    • De Ley, P.1    Blaxter, M.L.2
  • 20
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P, Svennblad B, Britton T, Oxelman B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst Biol 52:665-73.
    • (2003) Syst Biol , vol.52 , pp. 665-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 21
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401-10.
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 22
    • 0036010841 scopus 로고    scopus 로고
    • Molecular barcodes for soil nematode identification
    • Floyd R, Abebe E, Papert A, Blaxter M. 2002. Molecular barcodes for soil nematode identification. Mol Ecol 11:839-50.
    • (2002) Mol Ecol , vol.11 , pp. 839-850
    • Floyd, R.1    Abebe, E.2    Papert, A.3    Blaxter, M.4
  • 23
    • 11844288987 scopus 로고    scopus 로고
    • The rate of DNA evolution: Effects of body size and temperature on the molecular clock
    • Gillooly JF, Allen AP, West GB, Brown JH. 2005. The rate of DNA evolution: effects of body size and temperature on the molecular clock. Proc Natl Acad Sci USA 102:140-5.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 140-145
    • Gillooly, J.F.1    Allen, A.P.2    West, G.B.3    Brown, J.H.4
  • 24
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-8.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 25
    • 33748130495 scopus 로고    scopus 로고
    • Helder J, Van den Elsen SJJ, Bongers AMT, Van der Wurff AWG, Bakker J, Kammenga JE, inventors. 2004. Method for determining soil health ecologically and agriculturally. Patent PCT WO 2004/090164 A2. The Netherlands 14.04.2003
    • Helder J, Van den Elsen SJJ, Bongers AMT, Van der Wurff AWG, Bakker J, Kammenga JE, inventors. 2004. Method for determining soil health ecologically and agriculturally. Patent PCT WO 2004/090164 A2. The Netherlands 14.04.2003.
  • 26
    • 33748170279 scopus 로고    scopus 로고
    • The tale behind the worm
    • Herman RK. 2004. The tale behind the worm. Science 303:42.
    • (2004) Science , vol.303 , pp. 42
    • Herman, R.K.1
  • 27
    • 12044253190 scopus 로고
    • An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ. 1993. An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-92.
    • (1993) Syst Biol , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 28
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: Traditional and Bayesian approaches
    • Holder M, Lewis PO. 2003. Phylogeny estimation: traditional and Bayesian approaches. Nat Rev Genet 4:275-84.
    • (2003) Nat Rev Genet , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 30
    • 0012238797 scopus 로고    scopus 로고
    • Male and female gametes and fertilisation
    • Lee DL, editor. London: Taylor & Francis
    • Justine J-L. 2002. Male and female gametes and fertilisation. In: Lee DL, editor. The biology of nematodes. London: Taylor & Francis. p 73-119.
    • (2002) The Biology of Nematodes , pp. 73-119
    • Justine, J.-L.1
  • 31
    • 0026486403 scopus 로고
    • Relative-rate test for nucleotide substitutions between 2 lineages
    • Li P, Bousquet J. 1992. Relative-rate test for nucleotide substitutions between 2 lineages. Mol Biol Evol 9:1185-9.
    • (1992) Mol Biol Evol , vol.9 , pp. 1185-1189
    • Li, P.1    Bousquet, J.2
  • 33
    • 0041180133 scopus 로고
    • Phylogenetic systematics: Problems, achievements and its application to the Nematoda
    • Stone AR, Platt HM, Khalil LF, editors. London: Academic Press Inc.
    • Lorenzen S. 1983. Phylogenetic systematics: problems, achievements and its application to the Nematoda. In: Stone AR, Platt HM, Khalil LF, editors. Concepts in nematode systematics. London: Academic Press Inc. p 11-23.
    • (1983) Concepts in Nematode Systematics , pp. 11-23
    • Lorenzen, S.1
  • 35
    • 0002628019 scopus 로고
    • Comparative morphology in nemic phylogeny
    • Dougherty EC, editor. Berkeley, CA: University of California Press
    • Maggenti AR. 1963. Comparative morphology in nemic phylogeny. In: Dougherty EC, editor. The lower Metazoa, comparative biology and phylogeny. Berkeley, CA: University of California Press. p 273-82.
    • (1963) The Lower Metazoa, Comparative Biology and Phylogeny , pp. 273-282
    • Maggenti, A.R.1
  • 36
    • 4744355471 scopus 로고
    • Nemic relationships and the origin of plant parasitic nematodes
    • Zuckerman BM, Mai WF, Rohde RA, editors. New York: Academic Press Inc.
    • Maggenti AR. 1971. Nemic relationships and the origin of plant parasitic nematodes. In: Zuckerman BM, Mai WF, Rohde RA, editors. Plant parasitic nematodes. New York: Academic Press Inc. p 65-81.
    • (1971) Plant Parasitic Nematodes , pp. 65-81
    • Maggenti, A.R.1
  • 38
    • 0034152569 scopus 로고    scopus 로고
    • Molecular phylogeny: Pitfalls and progress
    • Moreira D, Philippe H. 2000. Molecular phylogeny: pitfalls and progress. Int Microbiol 3:9-16.
    • (2000) Int Microbiol , vol.3 , pp. 9-16
    • Moreira, D.1    Philippe, H.2
  • 41
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-8.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 42
    • 0031875195 scopus 로고    scopus 로고
    • Sensitivity of the relative-rate test to taxonomic sampling
    • Robinson M, Gouy M, Gautier C, Mouchiroud D. 1998. Sensitivity of the relative-rate test to taxonomic sampling. Mol Biol Evol 15:1091-8.
    • (1998) Mol Biol Evol , vol.15 , pp. 1091-1098
    • Robinson, M.1    Gouy, M.2    Gautier, C.3    Mouchiroud, D.4
  • 43
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi M, Huchon D. 2000. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-7.
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 44
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-4.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 45
    • 0037040580 scopus 로고    scopus 로고
    • The role of endosymbiotic Wolbachia bacteria in the pathogenesis of river blindness
    • Saint Andre AV, Blackwell NM, Hall LR, et al. 2002. The role of endosymbiotic Wolbachia bacteria in the pathogenesis of river blindness. Science 295:1892-5.
    • (2002) Science , vol.295 , pp. 1892-1895
    • Saint Andre, A.V.1    Blackwell, N.M.2    Hall, L.R.3
  • 46
    • 14544292598 scopus 로고    scopus 로고
    • Unusual cleavage and gastrulation in a freshwater nematode: Developmental and phylogenetic implications
    • Schierenberg E. 2005. Unusual cleavage and gastrulation in a freshwater nematode: developmental and phylogenetic implications. Dev Genes Evol 215:103-8.
    • (2005) Dev Genes Evol , vol.215 , pp. 103-108
    • Schierenberg, E.1
  • 47
    • 0035535942 scopus 로고    scopus 로고
    • Comparative studies on the phylogeny and systematics of the Rhabditidae (Nematoda)
    • Sudhaus W, Fitch D. 2001. Comparative studies on the phylogeny and systematics of the Rhabditidae (Nematoda). J Nematol 33:1-70.
    • (2001) J Nematol , vol.33 , pp. 1-70
    • Sudhaus, W.1    Fitch, D.2
  • 50
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R. 2000. Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28:4698-708.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, P.2    Van De Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6
  • 51
  • 52
    • 1542289671 scopus 로고    scopus 로고
    • Ultrastructure of spermatogenesis in the free-living marine nematode Anticoma possjetica (Enoplida: Anticomidae)
    • Yushin VV. 2003. Ultrastructure of spermatogenesis in the free-living marine nematode Anticoma possjetica (Enoplida: Anticomidae). Nematology 5:777-88.
    • (2003) Nematology , vol.5 , pp. 777-788
    • Yushin, V.V.1
  • 53
    • 0035123634 scopus 로고    scopus 로고
    • Ultrastructure of the postcorpus of the esophagus of Teratocephalus lirellus (Teratocephalida) and its use for interpreting character evolution in Secernentea (Nematoda)
    • Zhang YC, Baldwin JG. 2001. Ultrastructure of the postcorpus of the esophagus of Teratocephalus lirellus (Teratocephalida) and its use for interpreting character evolution in Secernentea (Nematoda). Can J Zool 79:16-25.
    • (2001) Can J Zool , vol.79 , pp. 16-25
    • Zhang, Y.C.1    Baldwin, J.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.