-
1
-
-
0036212917
-
Molecular mechanism of class switch recombination: linkage with somatic hypermutation
-
Honjo T, Kinoshita K, Muramatsu M, (2002) Molecular mechanism of class switch recombination: linkage with somatic hypermutation. Annu Rev Immunol 20: 165-196.
-
(2002)
Annu Rev Immunol
, vol.20
, pp. 165-196
-
-
Honjo, T.1
Kinoshita, K.2
Muramatsu, M.3
-
2
-
-
0032522564
-
Ku80 is required for immunoglobulin isotype switching
-
Casellas R, Nussenzweig A, Wuerffel R, Pelanda R, Reichlin A, et al. (1998) Ku80 is required for immunoglobulin isotype switching. Embo J 17: 2404-2411.
-
(1998)
Embo J
, vol.17
, pp. 2404-2411
-
-
Casellas, R.1
Nussenzweig, A.2
Wuerffel, R.3
Pelanda, R.4
Reichlin, A.5
-
3
-
-
13244268505
-
Impact of DNA ligase IV on nonhomologous end joining pathways during class switch recombination in human cells
-
Pan-Hammarstrom Q, Jones AM, Lahdesmaki A, Zhou W, Gatti RA, et al. (2005) Impact of DNA ligase IV on nonhomologous end joining pathways during class switch recombination in human cells. J Exp Med 201: 189-194.
-
(2005)
J Exp Med
, vol.201
, pp. 189-194
-
-
Pan-Hammarstrom, Q.1
Jones, A.M.2
Lahdesmaki, A.3
Zhou, W.4
Gatti, R.A.5
-
4
-
-
34748863465
-
IgH class switching and translocations use a robust non-classical end-joining pathway
-
Yan CT, Boboila C, Souza EK, Franco S, Hickernell TR, et al. (2007) IgH class switching and translocations use a robust non-classical end-joining pathway. Nature 449: 478-482.
-
(2007)
Nature
, vol.449
, pp. 478-482
-
-
Yan, C.T.1
Boboila, C.2
Souza, E.K.3
Franco, S.4
Hickernell, T.R.5
-
5
-
-
77953229115
-
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber MR, (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181-211.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
6
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, et al. (2000) Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102: 553-563.
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
-
7
-
-
0034264851
-
Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2)
-
Revy P, Muto T, Levy Y, Geissmann F, Plebani A, et al. (2000) Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2). Cell 102: 565-575.
-
(2000)
Cell
, vol.102
, pp. 565-575
-
-
Revy, P.1
Muto, T.2
Levy, Y.3
Geissmann, F.4
Plebani, A.5
-
8
-
-
0037083364
-
Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion
-
Arakawa H, Hauschild J, Buerstedde JM, (2002) Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion. Science 295: 1301-1306.
-
(2002)
Science
, vol.295
, pp. 1301-1306
-
-
Arakawa, H.1
Hauschild, J.2
Buerstedde, J.M.3
-
9
-
-
0037022540
-
AID is essential for immunoglobulin V gene conversion in a cultured B cell line
-
Harris RS, Sale JE, Petersen-Mahrt SK, Neuberger MS, (2002) AID is essential for immunoglobulin V gene conversion in a cultured B cell line. Curr Biol 12: 435-438.
-
(2002)
Curr Biol
, vol.12
, pp. 435-438
-
-
Harris, R.S.1
Sale, J.E.2
Petersen-Mahrt, S.K.3
Neuberger, M.S.4
-
10
-
-
0027417869
-
Shutdown of class switch recombination by deletion of a switch region control element
-
Jung S, Rajewsky K, Radbruch A, (1993) Shutdown of class switch recombination by deletion of a switch region control element. Science 259: 984-987.
-
(1993)
Science
, vol.259
, pp. 984-987
-
-
Jung, S.1
Rajewsky, K.2
Radbruch, A.3
-
11
-
-
0027273019
-
A selective defect in IgG2b switching as a result of targeted mutation of the I gamma 2b promoter and exon
-
Zhang J, Bottaro A, Li S, Stewart V, Alt FW, (1993) A selective defect in IgG2b switching as a result of targeted mutation of the I gamma 2b promoter and exon. Embo J 12: 3529-3537.
-
(1993)
Embo J
, vol.12
, pp. 3529-3537
-
-
Zhang, J.1
Bottaro, A.2
Li, S.3
Stewart, V.4
Alt, F.W.5
-
12
-
-
62449089909
-
The C-terminal region of activation-induced cytidine deaminase is responsible for a recombination function other than DNA cleavage in class switch recombination
-
Doi T, Kato L, Ito S, Shinkura R, Wei M, et al. (2009) The C-terminal region of activation-induced cytidine deaminase is responsible for a recombination function other than DNA cleavage in class switch recombination. Proc Natl Acad Sci U S A 106: 2758-2763.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 2758-2763
-
-
Doi, T.1
Kato, L.2
Ito, S.3
Shinkura, R.4
Wei, M.5
-
13
-
-
0141992113
-
C-terminal deletion of AID uncouples class switch recombination from somatic hypermutation and gene conversion
-
Barreto V, Reina-San-Martin B, Ramiro AR, McBride KM, Nussenzweig MC, (2003) C-terminal deletion of AID uncouples class switch recombination from somatic hypermutation and gene conversion. Mol Cell 12: 501-508.
-
(2003)
Mol Cell
, vol.12
, pp. 501-508
-
-
Barreto, V.1
Reina-San-Martin, B.2
Ramiro, A.R.3
McBride, K.M.4
Nussenzweig, M.C.5
-
14
-
-
80052678086
-
AID Binds Cooperatively with UNG and Msh2-Msh6 to Ig Switch Regions Dependent upon the AID C Terminus
-
Ranjit S, Khair L, Linehan EK, Ucher AJ, Chakrabarti M, et al. (2011) AID Binds Cooperatively with UNG and Msh2-Msh6 to Ig Switch Regions Dependent upon the AID C Terminus. J Immunol 187: 2464-2475.
-
(2011)
J Immunol
, vol.187
, pp. 2464-2475
-
-
Ranjit, S.1
Khair, L.2
Linehan, E.K.3
Ucher, A.J.4
Chakrabarti, M.5
-
15
-
-
0023020765
-
Secondary genomic rearrangement events in pre-B cells: VHDJH replacement by a LINE-1 sequence and directed class switching
-
Yancopoulos GD, DePinho RA, Zimmerman KA, Lutzker SG, Rosenberg N, et al. (1986) Secondary genomic rearrangement events in pre-B cells: VHDJH replacement by a LINE-1 sequence and directed class switching. Embo J 5: 3259-3266.
-
(1986)
Embo J
, vol.5
, pp. 3259-3266
-
-
Yancopoulos, G.D.1
DePinho, R.A.2
Zimmerman, K.A.3
Lutzker, S.G.4
Rosenberg, N.5
-
16
-
-
0022599997
-
Specificity of immunoglobulin heavy chain switch correlates with activity of germline heavy chain genes prior to switching
-
Stavnezer-Nordgren J, Sirlin S, (1986) Specificity of immunoglobulin heavy chain switch correlates with activity of germline heavy chain genes prior to switching. Embo J 5: 95-102.
-
(1986)
Embo J
, vol.5
, pp. 95-102
-
-
Stavnezer-Nordgren, J.1
Sirlin, S.2
-
17
-
-
0019889717
-
Switch region of immunoglobulin Cmu gene is composed of simple tandem repetitive sequences
-
Nikaido T, Nakai S, Honjo T, (1981) Switch region of immunoglobulin Cmu gene is composed of simple tandem repetitive sequences. Nature 292: 845-848.
-
(1981)
Nature
, vol.292
, pp. 845-848
-
-
Nikaido, T.1
Nakai, S.2
Honjo, T.3
-
18
-
-
0027190015
-
DNA sequences at immunoglobulin switch region recombination sites
-
Dunnick W, Hertz GZ, Scappino L, Gritzmacher C, (1993) DNA sequences at immunoglobulin switch region recombination sites. Nucleic Acids Res 21: 365-372.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 365-372
-
-
Dunnick, W.1
Hertz, G.Z.2
Scappino, L.3
Gritzmacher, C.4
-
19
-
-
79960335677
-
Topoisomerase 1 and Single-Strand Break Repair Modulate Transcription-Induced CAG Repeat Contraction in Human Cells
-
Hubert L Jr, Lin Y, Dion V, Wilson JH, (2011) Topoisomerase 1 and Single-Strand Break Repair Modulate Transcription-Induced CAG Repeat Contraction in Human Cells. Mol Cell Biol 31: 3105-3112.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 3105-3112
-
-
Hubert Jr., L.1
Lin, Y.2
Dion, V.3
Wilson, J.H.4
-
20
-
-
73749085274
-
Non-B DNA structure-induced genetic instability and evolution
-
Zhao J, Bacolla A, Wang G, Vasquez KM, (2010) Non-B DNA structure-induced genetic instability and evolution. Cell Mol Life Sci 67: 43-62.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 43-62
-
-
Zhao, J.1
Bacolla, A.2
Wang, G.3
Vasquez, K.M.4
-
21
-
-
76049125030
-
AID-induced decrease in topoisomerase 1 induces DNA structural alteration and DNA cleavage for class switch recombination
-
Kobayashi M, Aida M, Nagaoka H, Begum NA, Kitawaki Y, et al. (2009) AID-induced decrease in topoisomerase 1 induces DNA structural alteration and DNA cleavage for class switch recombination. Proc Natl Acad Sci U S A 106: 22375-22380.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 22375-22380
-
-
Kobayashi, M.1
Aida, M.2
Nagaoka, H.3
Begum, N.A.4
Kitawaki, Y.5
-
22
-
-
33747871340
-
The involvement of non-B DNA structures in gross chromosomal rearrangements
-
Bacolla A, Wojciechowska M, Kosmider B, Larson JE, Wells RD, (2006) The involvement of non-B DNA structures in gross chromosomal rearrangements. DNA Repair (Amst) 5: 1161-1170.
-
(2006)
DNA Repair (Amst)
, vol.5
, pp. 1161-1170
-
-
Bacolla, A.1
Wojciechowska, M.2
Kosmider, B.3
Larson, J.E.4
Wells, R.D.5
-
23
-
-
0037650190
-
R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells
-
Yu K, Chedin F, Hsieh CL, Wilson TE, Lieber MR, (2003) R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nat Immunol 4: 442-451.
-
(2003)
Nat Immunol
, vol.4
, pp. 442-451
-
-
Yu, K.1
Chedin, F.2
Hsieh, C.L.3
Wilson, T.E.4
Lieber, M.R.5
-
24
-
-
0037108463
-
Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice
-
Rada C, Williams GT, Nilsen H, Barnes DE, Lindahl T, et al. (2002) Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice. Curr Biol 12: 1748-1755.
-
(2002)
Curr Biol
, vol.12
, pp. 1748-1755
-
-
Rada, C.1
Williams, G.T.2
Nilsen, H.3
Barnes, D.E.4
Lindahl, T.5
-
25
-
-
66049129496
-
The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcription
-
Shen HM, Poirier MG, Allen MJ, North J, Lal R, et al. (2009) The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcription. J Exp Med 206: 1057-1071.
-
(2009)
J Exp Med
, vol.206
, pp. 1057-1071
-
-
Shen, H.M.1
Poirier, M.G.2
Allen, M.J.3
North, J.4
Lal, R.5
-
26
-
-
78650666372
-
Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination
-
Stanlie A, Aida M, Muramatsu M, Honjo T, Begum NA, (2010) Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination. Proc Natl Acad Sci U S A 107: 22190-22195.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 22190-22195
-
-
Stanlie, A.1
Aida, M.2
Muramatsu, M.3
Honjo, T.4
Begum, N.A.5
-
27
-
-
37249041657
-
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination
-
Matthews AG, Kuo AJ, Ramon-Maiques S, Han S, Champagne KS, et al. (2007) RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature 450: 1106-1110.
-
(2007)
Nature
, vol.450
, pp. 1106-1110
-
-
Matthews, A.G.1
Kuo, A.J.2
Ramon-Maiques, S.3
Han, S.4
Champagne, K.S.5
-
28
-
-
58749092121
-
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
-
Borde V, Robine N, Lin W, Bonfils S, Geli V, et al. (2009) Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. Embo J 28: 99-111.
-
(2009)
Embo J
, vol.28
, pp. 99-111
-
-
Borde, V.1
Robine, N.2
Lin, W.3
Bonfils, S.4
Geli, V.5
-
29
-
-
79955480674
-
Genome-wide analysis reveals novel molecular features of mouse recombination hotspots
-
Smagulova F, Gregoretti IV, Brick K, Khil P, Camerini-Otero RD, et al. (2011) Genome-wide analysis reveals novel molecular features of mouse recombination hotspots. Nature 472: 375-378.
-
(2011)
Nature
, vol.472
, pp. 375-378
-
-
Smagulova, F.1
Gregoretti, I.V.2
Brick, K.3
Khil, P.4
Camerini-Otero, R.D.5
-
30
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada T, Takagi T, Yamaguchi Y, Ferdous A, Imai T, et al. (1998) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev 12: 343-356.
-
(1998)
Genes Dev
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
-
31
-
-
0036232590
-
Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA
-
Yamaguchi Y, Inukai N, Narita T, Wada T, Handa H, (2002) Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA. Mol Cell Biol 22: 2918-2927.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 2918-2927
-
-
Yamaguchi, Y.1
Inukai, N.2
Narita, T.3
Wada, T.4
Handa, H.5
-
32
-
-
2542489173
-
Analysis of polymerase II elongation complexes by native gel electrophoresis. Evidence for a novel carboxyl-terminal domain-mediated termination mechanism
-
Zhang Z, Wu CH, Gilmour DS, (2004) Analysis of polymerase II elongation complexes by native gel electrophoresis. Evidence for a novel carboxyl-terminal domain-mediated termination mechanism. J Biol Chem 279: 23223-23228.
-
(2004)
J Biol Chem
, vol.279
, pp. 23223-23228
-
-
Zhang, Z.1
Wu, C.H.2
Gilmour, D.S.3
-
33
-
-
77954889072
-
Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex
-
Missra A, Gilmour DS, (2010) Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex. Proc Natl Acad Sci U S A 107: 11301-11306.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11301-11306
-
-
Missra, A.1
Gilmour, D.S.2
-
34
-
-
0034667949
-
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation
-
Andrulis ED, Guzman E, Doring P, Werner J, Lis JT, (2000) High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev 14: 2635-2649.
-
(2000)
Genes Dev
, vol.14
, pp. 2635-2649
-
-
Andrulis, E.D.1
Guzman, E.2
Doring, P.3
Werner, J.4
Lis, J.T.5
-
35
-
-
0032004953
-
Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
-
Hartzog GA, Wada T, Handa H, Winston F, (1998) Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae. Genes Dev 12: 357-369.
-
(1998)
Genes Dev
, vol.12
, pp. 357-369
-
-
Hartzog, G.A.1
Wada, T.2
Handa, H.3
Winston, F.4
-
36
-
-
66349122952
-
Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5
-
Zhou K, Kuo WH, Fillingham J, Greenblatt JF, (2009) Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5. Proc Natl Acad Sci U S A 106: 6956-6961.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 6956-6961
-
-
Zhou, K.1
Kuo, W.H.2
Fillingham, J.3
Greenblatt, J.F.4
-
37
-
-
58149151514
-
Controlling histone methylation via trans-histone pathways
-
Fingerman IM, Du HN, Briggs SD, (2008) Controlling histone methylation via trans-histone pathways. Epigenetics 3: 237-242.
-
(2008)
Epigenetics
, vol.3
, pp. 237-242
-
-
Fingerman, I.M.1
Du, H.N.2
Briggs, S.D.3
-
38
-
-
0037609009
-
NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila
-
Wu CH, Yamaguchi Y, Benjamin LR, Horvat-Gordon M, Washinsky J, et al. (2003) NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes Dev 17: 1402-1414.
-
(2003)
Genes Dev
, vol.17
, pp. 1402-1414
-
-
Wu, C.H.1
Yamaguchi, Y.2
Benjamin, L.R.3
Horvat-Gordon, M.4
Washinsky, J.5
-
39
-
-
1542314246
-
Elongation inhibition by DRB sensitivity-inducing factor is regulated by the A20 promoter via a novel negative element and NF-kappaB
-
Ainbinder E, Amir-Zilberstein L, Yamaguchi Y, Handa H, Dikstein R, (2004) Elongation inhibition by DRB sensitivity-inducing factor is regulated by the A20 promoter via a novel negative element and NF-kappaB. Mol Cell Biol 24: 2444-2454.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2444-2454
-
-
Ainbinder, E.1
Amir-Zilberstein, L.2
Yamaguchi, Y.3
Handa, H.4
Dikstein, R.5
-
40
-
-
77957239251
-
Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5
-
Pavri R, Gazumyan A, Jankovic M, Di Virgilio M, Klein I, et al. (2010) Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell 143: 122-133.
-
(2010)
Cell
, vol.143
, pp. 122-133
-
-
Pavri, R.1
Gazumyan, A.2
Jankovic, M.3
Di Virgilio, M.4
Klein, I.5
-
41
-
-
0030069150
-
High frequency class switching of an IgM+ B lymphoma clone CH12F3 to IgA+ cells
-
Nakamura M, Kondo S, Sugai M, Nazarea M, Imamura S, et al. (1996) High frequency class switching of an IgM+ B lymphoma clone CH12F3 to IgA+ cells. Int Immunol 8: 193-201.
-
(1996)
Int Immunol
, vol.8
, pp. 193-201
-
-
Nakamura, M.1
Kondo, S.2
Sugai, M.3
Nazarea, M.4
Imamura, S.5
-
42
-
-
61349174723
-
Role of human transcription elongation factor DSIF in the suppression of senescence and apoptosis
-
Komori T, Inukai N, Yamada T, Yamaguchi Y, Handa H, (2009) Role of human transcription elongation factor DSIF in the suppression of senescence and apoptosis. Genes Cells 14: 343-354.
-
(2009)
Genes Cells
, vol.14
, pp. 343-354
-
-
Komori, T.1
Inukai, N.2
Yamada, T.3
Yamaguchi, Y.4
Handa, H.5
-
43
-
-
79955613209
-
Histone acetylation by CBP and p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors
-
Ogiwara H, Ui A, Otsuka A, Satoh H, Yokomi I, et al. (2011) Histone acetylation by CBP and p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors. Oncogene 30: 2135-2146.
-
(2011)
Oncogene
, vol.30
, pp. 2135-2146
-
-
Ogiwara, H.1
Ui, A.2
Otsuka, A.3
Satoh, H.4
Yokomi, I.5
-
44
-
-
34548496891
-
Homologous recombination repair is regulated by domains at the N- and C-terminus of NBS1 and is dissociated with ATM functions
-
Sakamoto S, Iijima K, Mochizuki D, Nakamura K, Teshigawara K, et al. (2007) Homologous recombination repair is regulated by domains at the N- and C-terminus of NBS1 and is dissociated with ATM functions. Oncogene 26: 6002-6009.
-
(2007)
Oncogene
, vol.26
, pp. 6002-6009
-
-
Sakamoto, S.1
Iijima, K.2
Mochizuki, D.3
Nakamura, K.4
Teshigawara, K.5
-
45
-
-
0033569684
-
XRCC3 promotes homology-directed repair of DNA damage in mammalian cells
-
Pierce AJ, Johnson RD, Thompson LH, Jasin M, (1999) XRCC3 promotes homology-directed repair of DNA damage in mammalian cells. Genes Dev 13: 2633-2638.
-
(1999)
Genes Dev
, vol.13
, pp. 2633-2638
-
-
Pierce, A.J.1
Johnson, R.D.2
Thompson, L.H.3
Jasin, M.4
-
46
-
-
41149094512
-
Regulation of DNA repair throughout the cell cycle
-
Branzei D, Foiani M, (2008) Regulation of DNA repair throughout the cell cycle. Nat Rev Mol Cell Biol 9: 297-308.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 297-308
-
-
Branzei, D.1
Foiani, M.2
-
47
-
-
39049136956
-
Yeast screens identify the RNA polymerase II CTD and SPT5 as relevant targets of BRCA1 interaction
-
doi:10.1371/journal.pone.0001448
-
Bennett CB, Westmoreland TJ, Verrier CS, Blanchette CA, Sabin TL, et al. (2008) Yeast screens identify the RNA polymerase II CTD and SPT5 as relevant targets of BRCA1 interaction. PLoS ONE 3: e1448 doi:10.1371/journal.pone.0001448.
-
(2008)
PLoS ONE
, vol.3
-
-
Bennett, C.B.1
Westmoreland, T.J.2
Verrier, C.S.3
Blanchette, C.A.4
Sabin, T.L.5
-
48
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan CD, Laprade L, Winston F, (2003) Transcription elongation factors repress transcription initiation from cryptic sites. Science 301: 1096-1099.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
49
-
-
33745829068
-
The histone methyltransferase Suv39h1 increases class switch recombination specifically to IgA
-
Bradley SP, Kaminski DA, Peters AH, Jenuwein T, Stavnezer J, (2006) The histone methyltransferase Suv39h1 increases class switch recombination specifically to IgA. J Immunol 177: 1179-1188.
-
(2006)
J Immunol
, vol.177
, pp. 1179-1188
-
-
Bradley, S.P.1
Kaminski, D.A.2
Peters, A.H.3
Jenuwein, T.4
Stavnezer, J.5
-
50
-
-
66049120992
-
Ikaros controls isotype selection during immunoglobulin class switch recombination
-
Sellars M, Reina-San-Martin B, Kastner P, Chan S, (2009) Ikaros controls isotype selection during immunoglobulin class switch recombination. J Exp Med 206: 1073-1087.
-
(2009)
J Exp Med
, vol.206
, pp. 1073-1087
-
-
Sellars, M.1
Reina-San-Martin, B.2
Kastner, P.3
Chan, S.4
-
51
-
-
0021152709
-
Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae
-
Winston F, Chaleff DT, Valent B, Fink GR, (1984) Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae. Genetics 107: 179-197.
-
(1984)
Genetics
, vol.107
, pp. 179-197
-
-
Winston, F.1
Chaleff, D.T.2
Valent, B.3
Fink, G.R.4
-
52
-
-
0036839642
-
Subnuclear localization of Ku protein: functional association with RNA polymerase II elongation sites
-
Mo X, Dynan WS, (2002) Subnuclear localization of Ku protein: functional association with RNA polymerase II elongation sites. Mol Cell Biol 22: 8088-8099.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 8088-8099
-
-
Mo, X.1
Dynan, W.S.2
-
53
-
-
15844390393
-
A human RNA polymerase II complex associated with SRB and DNA-repair proteins
-
Maldonado E, Shiekhattar R, Sheldon M, Cho H, Drapkin R, et al. (1996) A human RNA polymerase II complex associated with SRB and DNA-repair proteins. Nature 381: 86-89.
-
(1996)
Nature
, vol.381
, pp. 86-89
-
-
Maldonado, E.1
Shiekhattar, R.2
Sheldon, M.3
Cho, H.4
Drapkin, R.5
-
54
-
-
56749157389
-
Transcription-coupled DNA repair: two decades of progress and surprises
-
Hanawalt PC, Spivak G, (2008) Transcription-coupled DNA repair: two decades of progress and surprises. Nat Rev Mol Cell Biol 9: 958-970.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
-
55
-
-
3543124198
-
Deletion of the nucleotide excision repair gene Ercc1 reduces immunoglobulin class switching and alters mutations near switch recombination junctions
-
Schrader CE, Vardo J, Linehan E, Twarog MZ, Niedernhofer LJ, et al. (2004) Deletion of the nucleotide excision repair gene Ercc1 reduces immunoglobulin class switching and alters mutations near switch recombination junctions. J Exp Med 200: 321-330.
-
(2004)
J Exp Med
, vol.200
, pp. 321-330
-
-
Schrader, C.E.1
Vardo, J.2
Linehan, E.3
Twarog, M.Z.4
Niedernhofer, L.J.5
-
56
-
-
22144443194
-
AID to overcome the limitations of genomic information
-
Honjo T, Nagaoka H, Shinkura R, Muramatsu M, (2005) AID to overcome the limitations of genomic information. Nat Immunol 6: 655-661.
-
(2005)
Nat Immunol
, vol.6
, pp. 655-661
-
-
Honjo, T.1
Nagaoka, H.2
Shinkura, R.3
Muramatsu, M.4
-
57
-
-
36148940618
-
S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase
-
Wuerffel R, Wang L, Grigera F, Manis J, Selsing E, et al. (2007) S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase. Immunity 27: 711-722.
-
(2007)
Immunity
, vol.27
, pp. 711-722
-
-
Wuerffel, R.1
Wang, L.2
Grigera, F.3
Manis, J.4
Selsing, E.5
-
58
-
-
19344367559
-
Activation-induced cytidine deaminase initiates immunoglobulin gene conversion and hypermutation by a common intermediate
-
doi:10.1371/journal.pone.0000179
-
Arakawa H, Saribasak H, Buerstedde JM, (2004) Activation-induced cytidine deaminase initiates immunoglobulin gene conversion and hypermutation by a common intermediate. PLoS Biol 2: e179 doi:10.1371/journal.pone.0000179.
-
(2004)
PLoS Biol
, vol.2
-
-
Arakawa, H.1
Saribasak, H.2
Buerstedde, J.M.3
-
59
-
-
77951893700
-
The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci
-
Ji Y, Resch W, Corbett E, Yamane A, Casellas R, et al. (2010) The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci. Cell 141: 419-431.
-
(2010)
Cell
, vol.141
, pp. 419-431
-
-
Ji, Y.1
Resch, W.2
Corbett, E.3
Yamane, A.4
Casellas, R.5
-
60
-
-
77954288177
-
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes
-
Merelli I, Guffanti A, Fabbri M, Cocito A, Furia L, et al. (2010) RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes. Nucleic Acids Res 38: W262-267.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Merelli, I.1
Guffanti, A.2
Fabbri, M.3
Cocito, A.4
Furia, L.5
-
61
-
-
43749118207
-
V(D)J recombinase binding and cleavage of cryptic recombination signal sequences identified from lymphoid malignancies
-
Zhang M, Swanson PC, (2008) V(D)J recombinase binding and cleavage of cryptic recombination signal sequences identified from lymphoid malignancies. J Biol Chem 283: 6717-6727.
-
(2008)
J Biol Chem
, vol.283
, pp. 6717-6727
-
-
Zhang, M.1
Swanson, P.C.2
-
62
-
-
57349185631
-
Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specificity
-
Tsai AG, Lu H, Raghavan SC, Muschen M, Hsieh CL, et al. (2008) Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specificity. Cell 135: 1130-1142.
-
(2008)
Cell
, vol.135
, pp. 1130-1142
-
-
Tsai, A.G.1
Lu, H.2
Raghavan, S.C.3
Muschen, M.4
Hsieh, C.L.5
-
63
-
-
0037033440
-
V(D)J-mediated translocations in lymphoid neoplasms: a functional assessment of genomic instability by cryptic sites
-
Marculescu R, Le T, Simon P, Jaeger U, Nadel B, (2002) V(D)J-mediated translocations in lymphoid neoplasms: a functional assessment of genomic instability by cryptic sites. J Exp Med 195: 85-98.
-
(2002)
J Exp Med
, vol.195
, pp. 85-98
-
-
Marculescu, R.1
Le, T.2
Simon, P.3
Jaeger, U.4
Nadel, B.5
-
64
-
-
78650308767
-
Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes
-
Yamane A, Resch W, Kuo N, Kuchen S, Li Z, et al. (2011) Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes. Nat Immunol 12: 62-69.
-
(2011)
Nat Immunol
, vol.12
, pp. 62-69
-
-
Yamane, A.1
Resch, W.2
Kuo, N.3
Kuchen, S.4
Li, Z.5
-
65
-
-
79953032797
-
Mechanisms that promote and suppress chromosomal translocations in lymphocytes
-
Gostissa M, Alt FW, Chiarle R, (2011) Mechanisms that promote and suppress chromosomal translocations in lymphocytes. Annu Rev Immunol 29: 319-350.
-
(2011)
Annu Rev Immunol
, vol.29
, pp. 319-350
-
-
Gostissa, M.1
Alt, F.W.2
Chiarle, R.3
-
66
-
-
37849036555
-
RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes
-
Glover-Cutter K, Kim S, Espinosa J, Bentley DL, (2008) RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes. Nat Struct Mol Biol 15: 71-78.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 71-78
-
-
Glover-Cutter, K.1
Kim, S.2
Espinosa, J.3
Bentley, D.L.4
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