-
1
-
-
78649516568
-
The past, present and future of crop genetic modification
-
Fedoroff, N.V. The past, present and future of crop genetic modification. New Biotechnol., 2010, 27, 461-465.
-
(2010)
New Biotechnol.
, vol.27
, pp. 461-465
-
-
Fedoroff, N.V.1
-
2
-
-
76749109506
-
Breeding technologies to increase crop production in a changing world
-
Tester, M.; Langridge, P. Breeding technologies to increase crop production in a changing world. Science, 2010, 327, 818-822.
-
(2010)
Science
, vol.327
, pp. 818-822
-
-
Tester, M.1
Langridge, P.2
-
5
-
-
78651492289
-
Genomic selection in plant breeding: Knowledge and prospects
-
Lorenz, A.J.; Chao, S.; Asoro, F.G.; Heffner, E.L.; Hayashi, T.; Iwata, H.; Smith, K.P.; Sorrells, M.K.; Jannink, J.L. Genomic selection in plant breeding: knowledge and prospects. Adv. Agron., 2011, 110, 77-123.
-
(2011)
Adv. Agron.
, vol.110
, pp. 77-123
-
-
Lorenz, A.J.1
Chao, S.2
Asoro, F.G.3
Heffner, E.L.4
Hayashi, T.5
Iwata, H.6
Smith, K.P.7
Sorrells, M.K.8
Jannink, J.L.9
-
7
-
-
40949130394
-
Marker-assisted selection: An approach for precision plant breeding in the twenty-first century
-
Collard, B.C.Y.; Mackill, D.J. Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Phil. Transact. Royal Soc. B, 2008, 363, 557-572.
-
(2008)
Phil. Transact. Royal Soc. B
, vol.363
, pp. 557-572
-
-
Collard, B.C.Y.1
Mackill, D.J.2
-
8
-
-
77955843853
-
More genomic resources for less-studied crops
-
Varshney, R.K.; Glaszmann, J.C.; Leung, H.; Ribaut, J.M. More genomic resources for less-studied crops. Trends Biotechnol., 2010, 28, 452-460.
-
(2010)
Trends Biotechnol.
, vol.28
, pp. 452-460
-
-
Varshney, R.K.1
Glaszmann, J.C.2
Leung, H.3
Ribaut, J.M.4
-
9
-
-
0037728656
-
From plant genomics to breeding practice
-
Morgante, M.; Salamini, F. From plant genomics to breeding practice. Curr. Opin. Biotechnol., 2003, 14, 214-219.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 214-219
-
-
Morgante, M.1
Salamini, F.2
-
10
-
-
35348937175
-
From crop domestication to super-domestication
-
Vaughan, D.A.; Balász, E.; Heslop-Harrison, J.S. From crop domestication to super-domestication. Ann. Bot., 2007, 100, 893-901.
-
(2007)
Ann. Bot.
, vol.100
, pp. 893-901
-
-
Vaughan, D.A.1
Balász, E.2
Heslop-Harrison, J.S.3
-
11
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative
-
The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 2010, 408, 796-815.
-
(2010)
Nature
, vol.408
, pp. 796-815
-
-
-
12
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature, 2005, 436, 793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
13
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P.S.; Ware, D.; Fulton, R.S.; Stein, J.C.; Wei, F.; Pasternak, S.; Liang, C.; Zhang, J.; Fulton, L.; Graves, T.A.; Minx, P.; Reily, A.D.; Courtney, L.; Kruchowski, S.S.; Tomlinson, C.; Strong, C.; Delehaunty, K.; Fronick, C.; Courtney, B.; Rock, S.M.; Belter, E.; Du, F.; Kim, K.; Abbott, R.M.; Cotton, M.; Levy, A.; Marchetto, P.; Ochoa, K.; Jackson, S.M.; Gillam, B.; Chen, W.; Yan, L.; Higginbotham, J.; Cardenas, M.; Waligorski, J.; Applebaum, E.; Phelps, L.; Falcone, J.; Kanchi, K.; Thane, T.; Scimone, A.; Thane, N.; Henke, J.; Wang, T.; Ruppert, J.; Shah, N.; Rotter, K.; Hodges, J.; Ingenthron, E.; Cordes, M.; Kohlberg, S.; Sgro, J.; Delgado, B.; Mead, K.; Chinwalla, A.; Leonard, S.; Crouse, K.; Collura, K.; Kudrna, D.; Currie, J.; He, R.; Angelova, A.; Rajasekar, S.; Mueller, T.; Lomeli, R.; Scara, G.; Ko, A.; Delaney, K.; Wissotski, M.; Lopez, G.; Campos, D.; Braidotti, M.; Ashley, E.; Golser, W.; Kim, H.; Lee, S.; Lin, J.; Dujmic, Z.; Kim, W.; Talag, J.; Zuccolo, A.; Fan, C.; Sebastian, A.; Kramer, M.; Spiegel, L.; Nascimento, L.; Zutavern, T.; Miller, B.; Ambroise, C.; Muller, S.; Spooner, W.; Narechania, A.; Ren, L.; Wei, S.; Kumari, S.; Faga, B.; Levy, MJ.; McMahan, L.; Van Buren, P.; Vaughn, M.W.; Ying, K.; Yeh, C.T.; Emrich, S.J.; Jia, Y.; Kalyanaraman, A.; Hsia, A.P.; Barbazuk, W.B.; Baucom, R.S.; Brutnell, T.P.; Carpita, N.C.; Chaparro, C.; Chia, J.M.; Deragon, J.M.; Estill, J.C.; Fu, Y.; Jeddeloh, J.A.; Han, Y.; Lee, H.; Li, P.; Lisch, D.R.; Liu, S.; Liu, Z.; Nagel, D.H.; McCann, M.C.; SanMiguel, P.; Myers, A.M.; Nettleton, D.; Nguyen, J.; Penning, B.W.; Ponnala, L.; Schneider, K.L.; Schwartz, D.C.; Sharma, A.; Soderlund, C.; Springer, N.M.; Sun, Q.; Wang, H.; Waterman, M.; Westerman, R.; Wolfgruber, T.K.; Yang, L.; Yu, Y.; Zhang, L.; Zhou, S.; Zhu, Q.; Bennetzen, J.L.; Dawe, R.K.; Jiang, J.; Jiang, N.; Presting, G.G.; Wessler, S.R.; Aluru, S.; Martienssen, R.A.; Clifton, S.W.; McCombie, W.R.; Wing, R.A.; Wilson, R.K. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009, 326, 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
Chen, W.31
Yan, L.32
Higginbotham, J.33
Cardenas, M.34
Waligorski, J.35
Applebaum, E.36
Phelps, L.37
Falcone, J.38
Kanchi, K.39
Thane, T.40
Scimone, A.41
Thane, N.42
Henke, J.43
Wang, T.44
Ruppert, J.45
Shah, N.46
Rotter, K.47
Hodges, J.48
Ingenthron, E.49
Cordes, M.50
Kohlberg, S.51
Sgro, J.52
Delgado, B.53
Mead, K.54
Chinwalla, A.55
Leonard, S.56
Crouse, K.57
Collura, K.58
Kudrna, D.59
Currie, J.60
He, R.61
Angelova, A.62
Rajasekar, S.63
Mueller, T.64
Lomeli, R.65
Scara, G.66
Ko, A.67
Delaney, K.68
Wissotski, M.69
Lopez, G.70
Campos, D.71
Braidotti, M.72
Ashley, E.73
Golser, W.74
Kim, H.75
Lee, S.76
Lin, J.77
Dujmic, Z.78
Kim, W.79
Talag, J.80
Zuccolo, A.81
Fan, C.82
Sebastian, A.83
Kramer, M.84
Spiegel, L.85
Nascimento, L.86
Zutavern, T.87
Miller, B.88
Ambroise, C.89
Muller, S.90
Spooner, W.91
Narechania, A.92
Ren, L.93
Wei, S.94
Kumari, S.95
Faga, B.96
Levy, M.J.97
McMahan, L.98
more..
-
14
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson, A.H.; Bowers, J.E.; Bruggmann, R.; Dubchak, I.; Grimwood, J.; Gundlach, H.; Haberer, G.; Hellsten, U.; Mitros, T.; Poliakov, A.; Schmutz, J.; Spannagl, M.; Tang, H.; Wang, X.; Wicker, T.; Bharti, A.K.; Chapman, J.; Feltus, F.A.; Gowik, U.; Grigoriev, I.V.; Lyons, E.; Maher, C.A.; Martis, M.; Narechania, A.; Otillar, R.P.; Penning, B.W.; Salamov, A.A.; Wang, Y.; Zhang, L.; Carpita, N.C.; Freeling, M.; Gingle, A.R.; Hash, C.T.; Keller, B.; Klein, P.; Kresovich, S.; McCann, M.C.; Ming, R.; Peterson, D.G. Rahman, M.; Ware, D.; Westhoff, P.; Mayer, K.F.X.; Messing, J.; Rokhsar, D.S. The Sorghum bicolor genome and the diversification of grasses. Nature, 2009, 457, 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
Schmutz, J.11
Spannagl, M.12
Tang, H.13
Wang, X.14
Wicker, T.15
Bharti, A.K.16
Chapman, J.17
Feltus, F.A.18
Gowik, U.19
Grigoriev, I.V.20
Lyons, E.21
Maher, C.A.22
Martis, M.23
Narechania, A.24
Otillar, R.P.25
Penning, B.W.26
Salamov, A.A.27
Wang, Y.28
Zhang, L.29
Carpita, N.C.30
Freeling, M.31
Gingle, A.R.32
Hash, C.T.33
Keller, B.34
Klein, P.35
Kresovich, S.36
McCann, M.C.37
Ming, R.38
Peterson, D.G.39
Rahman, M.40
Ware, D.41
Westhoff, P.42
Mayer, K.F.X.43
Messing, J.44
Rokhsar, D.S.45
more..
-
15
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan, G.A.; Difazio, S,; Jansson, S.; Bohlmann, J.; Grigoriev, I.; Hellsten, U.; Putnam, N.; Ralph, S.; Rombauts, S.; Salamov, A.; Schein, J.; Sterck, L.; Aerts, A.; Bhalerao, R.R.; Bhalerao, R.P.; Blaudez, D.; Boerjan, W.; Brun, A.; Brunner, A.; Busov, V.; Campbell, M.; Carlson, J.; Chalot, M.; Chapman, J.; Chen, G.L. Cooper, D.; Coutinho, P.M.; Couturier, J.; Covert, S.; Cronk, Q.; Cunningham, R.; Davis, J.; Degroeve, S.; Déjardin, A.; Depamphilis, C.; Detter, J.; Dirks, B.; Dubchak, I.; Duplessis, S.; Ehlting, J.; Ellis, B.; Gendler, K.; Goodstein, D.; Gribskov, M.; Grimwood, J.; Groover, A.; Gunter, L.; Hamberger, B.; Heinze, B.; Helariutta, Y.; Henrissat, B.; Holligan, D.; Holt, R.; Huang, W.; Islam-Faridi, N.; Jones, S.; Jones-Rhoades, M.; Jorgensen, R.; Joshi, C.; Kangasjärvi, J.; Karlsson, J.; Kelleher, C.; Kirkpatrick, R.; Kirst, M.; Kohler, A.; Kalluri, U.; Larimer, F.; Leebens-Mack, J.; Leplé, J.C.; Locascio, P.; Lou, Y.; Lucas, S.; Martin, F.; Montanini, B.; Napoli, C.; Nelson, D.R.; Nelson, C.; Nieminen, K.; Nilsson, O.; Pereda, V.; Peter, G.; Philippe, R.; Pilate, G.; Poliakov, A.; Razumovskaya, J.; Richardson, P.; Rinaldi, C.; Ritland, K.; Rouzé, P.; Ryaboy, D.; Schmutz, J.; Schrader, J.; Segerman, B.; Shin, H.; Siddiqui, A.; Sterky, F.; Terry, A.; Tsai, C.J.; Uberbacher, E.; Unneberg, P.; Vahala, J.; Wall, K.; Wessler, S.; Yang, G.; Yin, T.; Douglas, C.; Marra, M.; Sandberg, G.; Van de Peer, Y.; Rokhsar, D. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 2006, 313, 1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
Schein, J.11
Sterck, L.12
Aerts, A.13
Bhalerao, R.R.14
Bhalerao, R.P.15
Blaudez, D.16
Boerjan, W.17
Brun, A.18
Brunner, A.19
Busov, V.20
Campbell, M.21
Carlson, J.22
Chalot, M.23
Chapman, J.24
Chen, G.L.25
Cooper, D.26
Coutinho, P.M.27
Couturier, J.28
Covert, S.29
Cronk, Q.30
Cunningham, R.31
Davis, J.32
Degroeve, S.33
Déjardin, A.34
Depamphilis, C.35
Detter, J.36
Dirks, B.37
Dubchak, I.38
Duplessis, S.39
Ehlting, J.40
Ellis, B.41
Gendler, K.42
Goodstein, D.43
Gribskov, M.44
Grimwood, J.45
Groover, A.46
Gunter, L.47
Hamberger, B.48
Heinze, B.49
Helariutta, Y.50
Henrissat, B.51
Holligan, D.52
Holt, R.53
Huang, W.54
Islam-Faridi, N.55
Jones, S.56
Jones-Rhoades, M.57
Jorgensen, R.58
Joshi, C.59
Kangasjärvi, J.60
Karlsson, J.61
Kelleher, C.62
Kirkpatrick, R.63
Kirst, M.64
Kohler, A.65
Kalluri, U.66
Larimer, F.67
Leebens-Mack, J.68
Leplé, J.C.69
Locascio, P.70
Lou, Y.71
Lucas, S.72
Martin, F.73
Montanini, B.74
Napoli, C.75
Nelson, D.R.76
Nelson, C.77
Nieminen, K.78
Nilsson, O.79
Pereda, V.80
Peter, G.81
Philippe, R.82
Pilate, G.83
Poliakov, A.84
Razumovskaya, J.85
Richardson, P.86
Rinaldi, C.87
Ritland, K.88
Rouzé, P.89
Ryaboy, D.90
Schmutz, J.91
Schrader, J.92
Segerman, B.93
Shin, H.94
Siddiqui, A.95
Sterky, F.96
Terry, A.97
Tsai, C.J.98
more..
-
16
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
French-Italian Public Consortium for Grapevine Genome Characterization
-
Jaillon, O.; Aury, J.M.; Noel, B.; Policriti A.; Clepet, C.; Casagrande, A.; Choisne, N.; Aubourg, S.; Vitulo, N.; Jubin, C.; Vezzi, A.; Legeai, F.; Hugueney, P.; Dasilva, C.; Horner, D.; Mica, E.; Jublot, D.; Poulain, J.; Bruyère, C.; Billault, A.; Segurens, B.; Gouyvenoux, M.; Ugarte, E.; Cattonaro, F.; Anthouard, V.; Vico, V.; Del Fabbro, C.; Alaux, M.; Di Gaspero, G.; Dumas, V.; Felice, N.; Paillard, S.; Juman, I.; Moroldo, M.; Scalabrin, S.; Canaguier, A.; Le Clainche, I.; Malacrida, G.; Durand, E.; Pesole, G.; Laucou, V.; Chatelet, P.; Merdinoglu, D.; Delledonne, M.; Pezzotti, M.; Lecharny, A.; Scarpelli, C.; Artiguenave, F.; Pè, M.E.; Valle, G.; Morgante, M.; Caboche, M.; Adam-Blondon, A.F.; Weissenbach, J.; Quétier, F.; Wincker, P.; French-Italian Public Consortium for Grapevine Genome Characterization. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007, 449, 463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
Vezzi, A.11
Legeai, F.12
Hugueney, P.13
Dasilva, C.14
Horner, D.15
Mica, E.16
Jublot, D.17
Poulain, J.18
Bruyère, C.19
Billault, A.20
Segurens, B.21
Gouyvenoux, M.22
Ugarte, E.23
Cattonaro, F.24
Anthouard, V.25
Vico, V.26
Del Fabbro, C.27
Alaux, M.28
Di Gaspero, G.29
Dumas, V.30
Felice, N.31
Paillard, S.32
Juman, I.33
Moroldo, M.34
Scalabrin, S.35
Canaguier, A.36
Le Clainche, I.37
Malacrida, G.38
Durand, E.39
Pesole, G.40
Laucou, V.41
Chatelet, P.42
Merdinoglu, D.43
Delledonne, M.44
Pezzotti, M.45
Lecharny, A.46
Scarpelli, C.47
Artiguenave, F.48
Pè, M.E.49
Valle, G.50
Morgante, M.51
Caboche, M.52
Adam-Blondon, A.F.53
Weissenbach, J.54
Quétier, F.55
Wincker, P.56
more..
-
17
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming, R.; Hou, S.; Feng, Y.; Yu, O.; Dionne-Laporte, A.; Saw, J.H.; Senin, P.; Wang, W.; Ly, B.V.; Lewis, K.L.T.; Salzberg, S.L.; Feng, L.; Jones, M.R.; Skelton, R.L.; Murray, J.E.; Chen, C.; Qian, W.; Shen, J.; Du, P.; Moriah Eustice, M.E.; Tong, E.; Tang, H.; Lyons, E.; Paull, R.E.; Michael, T.P.; Wall, K.; Rice, D.W.; Albert, H.; Wang, M.L.; Zhu, Y.J.; Schatz, M.; Nagarajan, N.; Acob, R.A.; Guan, P.; Blas, A.; Wai, C.M.; Ackerman, C.M.; Ren, Y.; Liu, C.; Wang, J.; Wang, J.; Na, J.K.; Shakirov, E.V.; Brian Haas, B.; Thimmapuram, J.; Nelson, D.; Wang, X.; Bowers, J.E.; Gschwend, A.R.; Delcher, A.L.; Singh, R.; Suzuki, J.Y.; Tripathi, S.; Neupane, K.; Wei, H.; Irikura, B.; Paidi, M.; Jiang, N.; Zhang, W.; Presting, G.; Windsor, A.; Navajas-Pérez, R.; Torres, M.J.; Feltus, F.A.; Porter, B.; Li, Y.; Burroughs, A.M.; Luo, M.C.; Liu, L.; Christopher, D.A.; Mount, S.M.; Moore, P.H.; Sugimura, T.; Jiang, J.; Schuler, M.A.; Friedman, V.; Mitchell-Olds, T.; Shippen, D.E.; dePamphilis, C.W.; Palmer, J.D.; Freeling, M.; Paterson, A.H.; Gonsalves, D.; Wang, L.; Alam, M. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature, 2008, 452, 991-996.
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, O.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.T.10
Salzberg, S.L.11
Feng, L.12
Jones, M.R.13
Skelton, R.L.14
Murray, J.E.15
Chen, C.16
Qian, W.17
Shen, J.18
Du, P.19
Moriah Eustice, M.E.20
Tong, E.21
Tang, H.22
Lyons, E.23
Paull, R.E.24
Michael, T.P.25
Wall, K.26
Rice, D.W.27
Albert, H.28
Wang, M.L.29
Zhu, Y.J.30
Schatz, M.31
Nagarajan, N.32
Acob, R.A.33
Guan, P.34
Blas, A.35
Wai, C.M.36
Ackerman, C.M.37
Ren, Y.38
Liu, C.39
Wang, J.40
Wang, J.41
Na, J.K.42
Shakirov, E.V.43
Brian Haas, B.44
Thimmapuram, J.45
Nelson, D.46
Wang, X.47
Bowers, J.E.48
Gschwend, A.R.49
Delcher, A.L.50
Singh, R.51
Suzuki, J.Y.52
Tripathi, S.53
Neupane, K.54
Wei, H.55
Irikura, B.56
Paidi, M.57
Jiang, N.58
Zhang, W.59
Presting, G.60
Windsor, A.61
Navajas-Pérez, R.62
Torres, M.J.63
Feltus, F.A.64
Porter, B.65
Li, Y.66
Burroughs, A.M.67
Luo, M.C.68
Liu, L.69
Christopher, D.A.70
Mount, S.M.71
Moore, P.H.72
Sugimura, T.73
Jiang, J.74
Schuler, M.A.75
Friedman, V.76
Mitchell-Olds, T.77
Shippen, D.E.78
dePamphilis, C.W.79
Palmer, J.D.80
Freeling, M.81
Paterson, A.H.82
Gonsalves, D.83
Wang, L.84
Alam, M.85
more..
-
18
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz, J.; Cannon, S.B.; Schlueter, J.; Ma, J.; Mitros, T.; Nelson, W.; Hyten, D.L.; Song, Q.; Thelen, J.J.; Cheng, J.; Xu, D.; Hellsten, U.; May, G.D.; Yu, Y.; Sakurai, T.; Umezawa, T.; Bhattacharyya, M.K.; Sandhu, D.; Valliyodan, B.; Lindquist, E.; Peto, M.; Grant, D.; Shu, S.; Goodstein, D.; Barry, K.; Futrell-Griggs, M.; Abernathy, B.; Du, J.; Tian, Z.; Zhu, L.; Gill, N.; Joshi, T.; Libault, M.; Sethuraman, A.; Zhang, X.C.; Shinozaki, K.; Nguyen, H.T.; Wing, R.A.; Cregan, P.; Specht, J.; Grimwood, J.; Rokhsar, D.; Stacey, G.; Shoemaker, R.C.; Jackson, S.A. Genome sequence of the palaeopolyploid soybean. Nature, 2010, 463, 178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
Xu, D.11
Hellsten, U.12
May, G.D.13
Yu, Y.14
Sakurai, T.15
Umezawa, T.16
Bhattacharyya, M.K.17
Sandhu, D.18
Valliyodan, B.19
Lindquist, E.20
Peto, M.21
Grant, D.22
Shu, S.23
Goodstein, D.24
Barry, K.25
Futrell-Griggs, M.26
Abernathy, B.27
Du, J.28
Tian, Z.29
Zhu, L.30
Gill, N.31
Joshi, T.32
Libault, M.33
Sethuraman, A.34
Zhang, X.C.35
Shinozaki, K.36
Nguyen, H.T.37
Wing, R.A.38
Cregan, P.39
Specht, J.40
Grimwood, J.41
Rokhsar, D.42
Stacey, G.43
Shoemaker, R.C.44
Jackson, S.A.45
more..
-
19
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker, M. Sequencing technologies-the next generation. Nat. Rev. Genet., 2010, 11, 31.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31
-
-
Metzker, M.1
-
20
-
-
78650502725
-
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
-
Wang, Z.; Fang, B.; Jingyi, C.; Zhang, X.; Luo, X.; Huang, L.; Chen, X.; Li, Y. De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas). BMC Genomics, 2011, 11, 726.
-
(2011)
BMC Genomics
, vol.11
, pp. 726
-
-
Wang, Z.1
Fang, B.2
Jingyi, C.3
Zhang, X.4
Luo, X.5
Huang, L.6
Chen, X.7
Li, Y.8
-
21
-
-
79751531335
-
Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
-
Blanca, J.; Cañizares, J.; Roig, C.; Ziarsolo, P.; Nuez, F.; Picó, B. Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae). BMC Genomics, 2011, 12, 104.
-
(2011)
BMC Genomics
, vol.12
, pp. 104
-
-
Blanca, J.1
Cañizares, J.2
Roig, C.3
Ziarsolo, P.4
Nuez, F.5
Picó, B.6
-
22
-
-
78651533840
-
Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]
-
Dutta, S.; Kumawat, G.; Singh, B.P.; Gupta, D.K.; Singh, S.; Dogra, V.; Gaikwad, K.; Sharma, T.R.; Raje, R.S.; Bandhopadhya, T.K.; Datta, S.; Singh, M.N.; Bashasab, F.; Kulwal, P.; Wanjari, K.B.; Varshney, R.K.; Cook D.R.; Singh, N.K. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biol., 2011, 11, 17.
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 17
-
-
Dutta, S.1
Kumawat, G.2
Singh, B.P.3
Gupta, D.K.4
Singh, S.5
Dogra, V.6
Gaikwad, K.7
Sharma, T.R.8
Raje, R.S.9
Bandhopadhya, T.K.10
Datta, S.11
Singh, M.N.12
Bashasab, F.13
Kulwal, P.14
Wanjari, K.B.15
Varshney, R.K.16
Cook, D.R.17
Singh, N.K.18
-
23
-
-
78651337304
-
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
-
Logacheva, M.D.; Kasianov, A.S.; Vinogradov, D.V.; Samigullin, T.H.; Gelfand, M.S.; Makeev, V.J.; Penin, A.A. De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum). BMC Genomics, 2011, 12, 30.
-
(2011)
BMC Genomics
, vol.12
, pp. 30
-
-
Logacheva, M.D.1
Kasianov, A.S.2
Vinogradov, D.V.3
Samigullin, T.H.4
Gelfand, M.S.5
Makeev, V.J.6
Penin, A.A.7
-
24
-
-
68549104404
-
Genome Project Data P: The Sequence Alignment/Map format and SAMtools
-
Li, H.; Handsaker, B.; Wysoker, A.; Fennell, T.; Ruan, J.; Homer, N.; Marth, G.; Abecasis, G.; Durbin, R. Genome Project Data P: The Sequence Alignment/Map format and SAMtools. Bioinformatics, 2009, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
25
-
-
39649084637
-
Bioinformatics challenges of new sequencing technology
-
Pop, M.; Salzberg, S.L. Bioinformatics challenges of new sequencing technology. Trends Genet., 2008, 24, 142-149.
-
(2008)
Trends Genet.
, vol.24
, pp. 142-149
-
-
Pop, M.1
Salzberg, S.L.2
-
26
-
-
77950941484
-
Bioinformatics approaches for genomics and post genomics applications of nextgeneration sequencing
-
Horner, D.S.; Pavesi, G.; Castrignanò, T.; Meo, P.D.O.D.; Liuni, S.; Sammeth, M.; Picardi, E.; Presole, G. Bioinformatics approaches for genomics and post genomics applications of nextgeneration sequencing. Brief. Bioinform., 2009, 2, 181-197.
-
(2009)
Brief. Bioinform.
, vol.2
, pp. 181-197
-
-
Horner, D.S.1
Pavesi, G.2
Castrignanò, T.3
Meo, P.D.O.D.4
Liuni, S.5
Sammeth, M.6
Picardi, E.7
Presole, G.8
-
27
-
-
77957272611
-
A survey of sequence alignment algorithms for next-generation sequencing
-
Li, H.; Horner, D.S. A survey of sequence alignment algorithms for next-generation sequencing. Brief. Bioinform., 2010, 2, 473-483.
-
(2010)
Brief. Bioinform.
, vol.2
, pp. 473-483
-
-
Li, H.1
Horner, D.S.2
-
28
-
-
77951998724
-
Exploring plant transcriptomes using ultra high-throughput sequencing
-
Wang, L.; Li, P.; Brutnell, T.P. Exploring plant transcriptomes using ultra high-throughput sequencing. Brief. Funct. Genomics, 2010, 9, 118-128.
-
(2010)
Brief. Funct. Genomics
, vol.9
, pp. 118-128
-
-
Wang, L.1
Li, P.2
Brutnell, T.P.3
-
29
-
-
43249099500
-
Twenty-five years of quantitative PCR for gene expression analysis
-
VanGuilder, H.D.; Vrana, K.E.; Freeman, W.M. Twenty-five years of quantitative PCR for gene expression analysis. Biotechniques, 2008, 44, 619-626.
-
(2008)
Biotechniques
, vol.44
, pp. 619-626
-
-
VanGuilder, H.D.1
Vrana, K.E.2
Freeman, W.M.3
-
30
-
-
0030138199
-
Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
-
Bachem, C.W.; van der Hoeven, R.S.; de Bruijn, S.M.; Vreugdenhil, D.; Zabeau, M.; Visser, R.G. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J., 1996, 9, 745-753.
-
(1996)
Plant J.
, vol.9
, pp. 745-753
-
-
Bachem, C.W.1
van der Hoeven, R.S.2
de Bruijn, S.M.3
Vreugdenhil, D.4
Zabeau, M.5
Visser, R.G.6
-
31
-
-
58149299918
-
Serial Analysis of Gene Expression (SAGE): 13 years of application in research
-
Anisimov, S.V. Serial Analysis of Gene Expression (SAGE): 13 years of application in research. Curr. Pharm. Biotechnol., 2008, 9, 338-350.
-
(2008)
Curr. Pharm. Biotechnol.
, vol.9
, pp. 338-350
-
-
Anisimov, S.V.1
-
32
-
-
3242875708
-
Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms
-
Reinartz, J.; Bruyns, E.; Lin, J.Z.; Burcham, T.; Brenner, S.; Bowen, B.; Kramer, M.; Woychik, R. Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms. Brief. Funct. Genomics Proteomics, 2002, 1 95-104.
-
(2002)
Brief. Funct. Genomics Proteomics
, vol.1
, pp. 95-104
-
-
Reinartz, J.1
Bruyns, E.2
Lin, J.Z.3
Burcham, T.4
Brenner, S.5
Bowen, B.6
Kramer, M.7
Woychik, R.8
-
33
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M.; Shalon, D.; Davis, R.W.; Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 1995, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
34
-
-
21444445084
-
BABELOMICS: A suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
-
Al-Shahrour, F.; Minguez, P.; Vaquerizas, J.M.; Conde, L.; Dopazo, J. BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Nucleic Acids Res., 2005, 33, 460-464.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 460-464
-
-
Al-Shahrour, F.1
Minguez, P.2
Vaquerizas, J.M.3
Conde, L.4
Dopazo, J.5
-
35
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A.I.; Sharov, V.; White, J.; Li, J.; Liang, W.; Bhagabati, N.; Braisted, J.; Klapa, M.; Currier, T.; Thiagarajan, M.; Sturn, A.; Snuffin, M.; Rezantsev, A.; Popov, D.; Ryltsov, A.; Kostukovich, E.; Borisovsky, I.; Liu, Z.; Vinsavich, A.; Trush, V.; Quackenbush, J. TM4: a free, open-source system for microarray data management and analysis. Biotechniques, 2003, 34, 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
36
-
-
64749094910
-
Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases
-
Zimmermann, P.; Laule, O.; Schmitz, J.; Hruz, T.; Bleuler, S.; Gruissem, W. Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases. Mol. Plant, 2008, 1, 851-857.
-
(2008)
Mol. Plant
, vol.1
, pp. 851-857
-
-
Zimmermann, P.1
Laule, O.2
Schmitz, J.3
Hruz, T.4
Bleuler, S.5
Gruissem, W.6
-
37
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M.; Davison, T.S.; Henz, S.R.; Pape, U.J.; Demar, M.; Vingron, M.; Scholkopf, B.; Weigel, D.; Lohmann, J.U. A gene expression map of Arabidopsis thaliana development. Nat. Genet., 2005, 37, 501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
38
-
-
78651339534
-
NCBI GEO: Archive for functional genomics data sets-10 years on
-
Barrett, T.; Troup, D.B.; Wilhite, S.E.; Ledoux, P.; Evangelista, C.; Kim, I.F.; Tomashevsky, M.; Marshall, K.A.; Phillippy, K.H.; Sherman, P.M.; Muertter, R.N.; Holko, M.; Ayanbule, O.; Yefanov, A.; Soboleva, A. NCBI GEO: archive for functional genomics data sets-10 years on. Nucleic Acids Res., 2011, 39, 1005-1010.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1005-1010
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Evangelista, C.5
Kim, I.F.6
Tomashevsky, M.7
Marshall, K.A.8
Phillippy, K.H.9
Sherman, P.M.10
Muertter, R.N.11
Holko, M.12
Ayanbule, O.13
Yefanov, A.14
Soboleva, A.15
-
39
-
-
78651284406
-
ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments
-
Parkinson, H.; Sarkans, U.; Kolesnikov, N.; Abeygunawardena, N.; Burdett, T.; Dylag, M.; Emam, I.; Farne, A.; Hastings, E.; Holloway, E.; Kurbatova, N.; Lukk, M.; Malone, J.; Mani, R.; Pilicheva, E.; Rustici, G.; Sharma, A.; Williams, E.; Adamusiak, T.; Brandizi, M.; Sklyar, N.; Brazma A. ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res., 2011, 39, 1002-1004.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1002-1004
-
-
Parkinson, H.1
Sarkans, U.2
Kolesnikov, N.3
Abeygunawardena, N.4
Burdett, T.5
Dylag, M.6
Emam, I.7
Farne, A.8
Hastings, E.9
Holloway, E.10
Kurbatova, N.11
Lukk, M.12
Malone, J.13
Mani, R.14
Pilicheva, E.15
Rustici, G.16
Sharma, A.17
Williams, E.18
Adamusiak, T.19
Brandizi, M.20
Sklyar, N.21
Brazma, A.22
more..
-
40
-
-
35248840075
-
Analysis of gene expression during the fruit set of tomato: A comparative approach
-
Pascual, L.; Blanca, JM.; Canizares, J.; Nuez, F. Analysis of gene expression during the fruit set of tomato: A comparative approach. Plant Sci., 2007, 173, 609-620.
-
(2007)
Plant Sci.
, vol.173
, pp. 609-620
-
-
Pascual, L.1
Blanca, J.M.2
Canizares, J.3
Nuez, F.4
-
41
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J.C.; Mason, C.E.; Mane, S.M.; Stephens, M.; Gilad, Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res., 2008, 18, 1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
42
-
-
77950655027
-
Gene set enrichment metalearning analysis: Next-generation sequencing versus microarrays
-
Stiglic, G.; Bajgot, M.; Kokol, P. Gene set enrichment metalearning analysis: next-generation sequencing versus microarrays. BMC Bioinformatics, 2010, 11, 176.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 176
-
-
Stiglic, G.1
Bajgot, M.2
Kokol, P.3
-
43
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan, N.; Forrest, A.R.; Kolle, G.; Gardiner, B.B.; Faulkner, G.J.; Brown, M.K.; Taylor, D.F.; Steptoe, A.L.; Wani, S.; Bethel, G.; Robertson, A.J.; Perkins, A.C.; Bruce, S.J.; Lee, C.C.; Ranade, S.S.; Peckham, H.E.; Manning, J.M.; McKernan, K.J.; Grimmond, S.M. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods, 2008, 5, 613-619.
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.2
Kolle, G.3
Gardiner, B.B.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
44
-
-
70349662156
-
Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development
-
Alagna, F.; D'Agostino, N.; Torchia, L.; Servili, M.; Rao, R.; Pietrella, M.; Giuliano, G.; Chiusano, M.L.; Baldoni, L.; Perrotta. G. Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genomics, 2009, 10, 399.
-
(2009)
BMC Genomics
, vol.10
, pp. 399
-
-
Alagna, F.1
D'Agostino, N.2
Torchia, L.3
Servili, M.4
Rao, R.5
Pietrella, M.6
Giuliano, G.7
Chiusano, M.L.8
Baldoni, L.9
Perrotta, G.10
-
45
-
-
77950545365
-
Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq
-
Zenoni, S.; Ferrarini, A.; Giacomelli, E.; Xumerle, E.; Fasoli, M.; Malerba, G.; Bellin, D.; Pezzotti, M.; Delledonne, M. Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Plant Phisiol., 2010, 152, 1787-1795.
-
(2010)
Plant Phisiol.
, vol.152
, pp. 1787-1795
-
-
Zenoni, S.1
Ferrarini, A.2
Giacomelli, E.3
Xumerle, E.4
Fasoli, M.5
Malerba, G.6
Bellin, D.7
Pezzotti, M.8
Delledonne, M.9
-
46
-
-
79954516469
-
Second-generation sequencing supply an effective way to screen RNAi targets in large scale for potential application in pest insect control
-
Wang, Y.; Zhang, H.; Li, H.; Miao, X. Second-generation sequencing supply an effective way to screen RNAi targets in large scale for potential application in pest insect control. PLoS One, 2011, 6(4), e18644.
-
(2011)
PLoS One
, vol.6
, Issue.4
-
-
Wang, Y.1
Zhang, H.2
Li, H.3
Miao, X.4
-
47
-
-
79952045110
-
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
-
Shi, C.Y.; Yang, H.; Wei, C.L.; Yu, O.; Zhang, Z.Z.; Jiang, C.J.; Sun, J.; Li, Y.Y.; Chen, Q.; Xia, T.; Wan, X.C. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics, 2011, 12, 131.
-
(2011)
BMC Genomics
, vol.12
, pp. 131
-
-
Shi, C.Y.1
Yang, H.2
Wei, C.L.3
Yu, O.4
Zhang, Z.Z.5
Jiang, C.J.6
Sun, J.7
Li, Y.Y.8
Chen, Q.9
Xia, T.10
Wan, X.C.11
-
48
-
-
33749526171
-
Plant genetic resources conservation and utilization: The accomplishments and future of a societal insurance policy
-
Gepts, P. Plant genetic resources conservation and utilization: the accomplishments and future of a societal insurance policy. Crop Sci., 2006, 46, 2278-2292.
-
(2006)
Crop Sci.
, vol.46
, pp. 2278-2292
-
-
Gepts, P.1
-
49
-
-
67650876475
-
Mutation discovery for crop improvement
-
Parry, M.A.J.; Madgwick, P.J.; Bayon, C.; Tearall, K.; Hernandez-Lopez, A.; Baudo, M.; Rakszegi, M.; Hamada, W.; Al-Yassin, A.; Ouabbou, H.; Labhilili, M.; Phillips, A.L. Mutation discovery for crop improvement. J. Exp. Bot., 2009, 60, 2817-2825.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 2817-2825
-
-
Parry, M.A.J.1
Madgwick, P.J.2
Bayon, C.3
Tearall, K.4
Hernandez-Lopez, A.5
Baudo, M.6
Rakszegi, M.7
Hamada, W.8
Al-Yassin, A.9
Ouabbou, H.10
Labhilili, M.11
Phillips, A.L.12
-
50
-
-
0037352032
-
Large-scale discovery of induced point mutations with high-throughput TILLING
-
Till, B.J.; Reynolds, S.H.; Greene, E.A.; Codomo, C.A.; Enns, L.C.; Johnson, J.E.; Burtner, C.; Odden, A.R.; Young, K.; Taylor, N.E.; Henikoff, J.G.; Comai, L.; Henikoff, S. Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res., 2003, 13, 524-530.
-
(2003)
Genome Res.
, vol.13
, pp. 524-530
-
-
Till, B.J.1
Reynolds, S.H.2
Greene, E.A.3
Codomo, C.A.4
Enns, L.C.5
Johnson, J.E.6
Burtner, C.7
Odden, A.R.8
Young, K.9
Taylor, N.E.10
Henikoff, J.G.11
Comai, L.12
Henikoff, S.13
-
51
-
-
10744223304
-
Efficient discovery of DNA polymorphisms in natural populations by EcoTILLING
-
Comai, L.; Young, K.; Till, B.J.; Reynolds, S.H.; Greene, E.A.; Codomo, C.A.; Enns, L.C.; Johnson, J.E.; Burtner, C.; Odden, A.R.; Henikoff, S. Efficient discovery of DNA polymorphisms in natural populations by EcoTILLING. Plant J., 2004, 37, 778-786.
-
(2004)
Plant J.
, vol.37
, pp. 778-786
-
-
Comai, L.1
Young, K.2
Till, B.J.3
Reynolds, S.H.4
Greene, E.A.5
Codomo, C.A.6
Enns, L.C.7
Johnson, J.E.8
Burtner, C.9
Odden, A.R.10
Henikoff, S.11
-
52
-
-
3042525130
-
Mismatch cleavage by single-strand specific nucleases
-
Till, B.J.; Burtner, C.; Comai, L.; Henikoff, S. Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res., 2004, 32, 2632-2641.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2632-2641
-
-
Till, B.J.1
Burtner, C.2
Comai, L.3
Henikoff, S.4
-
53
-
-
44049096293
-
Mutation detection using ENDO1: Application to disease diagnostics in humans and TILLING and EcoTILLING in plants
-
Triques, K.; Piednoir, E.; Dalmais, M.; Schmidt, J.; Le Signor, C.; Sharkey, M.; Caboche, M.; Sturbois, B.; Bendahmane, A. Mutation detection using ENDO1: Application to disease diagnostics in humans and TILLING and EcoTILLING in plants. BMC Mol. Biol., 2008, 9, 9.
-
(2008)
BMC Mol. Biol.
, vol.9
, pp. 9
-
-
Triques, K.1
Piednoir, E.2
Dalmais, M.3
Schmidt, J.4
Le Signor, C.5
Sharkey, M.6
Caboche, M.7
Sturbois, B.8
Bendahmane, A.9
-
54
-
-
45749141267
-
Application of TILLING and EcoTILLING as reverse genetic approaches to elucidate the function of genes in plants and animals
-
Barkley, N.A.; Wang, M.L. Application of TILLING and EcoTILLING as reverse genetic approaches to elucidate the function of genes in plants and animals. Curr. Genomics, 2008, 9, 212-226.
-
(2008)
Curr. Genomics
, vol.9
, pp. 212-226
-
-
Barkley, N.A.1
Wang, M.L.2
-
55
-
-
0034983483
-
Highthroughput screening for induced point mutations
-
Colbert, T.; Till, B.J.; Tompa, R.; Reynolds, S.; Steine, M.N.; Yeung, A.T.; McCallum, C.M.; Comai, L.; Henikoff, S. Highthroughput screening for induced point mutations. Plant Physiol., 2001, 126, 480-484.
-
(2001)
Plant Physiol.
, vol.126
, pp. 480-484
-
-
Colbert, T.1
Till, B.J.2
Tompa, R.3
Reynolds, S.4
Steine, M.N.5
Yeung, A.T.6
McCallum, C.M.7
Comai, L.8
Henikoff, S.9
-
56
-
-
0347091252
-
A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus
-
Perry, J.A.; Wang, T.L.; Welham, T.J.; Gardner, S.; Pike, J.M.; Yoshida, S.; Parniske, M. A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol., 2003, 131, 866-871.
-
(2003)
Plant Physiol.
, vol.131
, pp. 866-871
-
-
Perry, J.A.1
Wang, T.L.2
Welham, T.J.3
Gardner, S.4
Pike, J.M.5
Yoshida, S.6
Parniske, M.7
-
57
-
-
5144232519
-
A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L)
-
Caldwell, D.G.; McCallum, N.; Shaw, P.; Muehlbauer, G.J.; Marshall, D.F.; Waugh, R. A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L). Plant J., 2004, 40, 143-150.
-
(2004)
Plant J.
, vol.40
, pp. 143-150
-
-
Caldwell, D.G.1
McCallum, N.2
Shaw, P.3
Muehlbauer, G.J.4
Marshall, D.F.5
Waugh, R.6
-
58
-
-
33847315995
-
Getting to the point-mutations in maize
-
Weil, C.F.; Monde, R.A. Getting to the point-mutations in maize. Crop Sci., 2007, 47, S60-S67.
-
(2007)
Crop Sci.
, vol.47
-
-
Weil, C.F.1
Monde, R.A.2
-
59
-
-
34548482029
-
Characterization of Arabidopsis thaliana mismatch specific endonucleases: Application to mutation discovery by TILLING in pea
-
Triques, K.; Sturbois, B.; Gallais, S.; Dalmais, M.; Chauvin, S.; Clepet, C.; Aubourg, S.; Rameau, C.; Caboche, M.; Bendahmane, A. Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea. Plant J., 2007, 51, 1116-1125.
-
(2007)
Plant J.
, vol.51
, pp. 1116-1125
-
-
Triques, K.1
Sturbois, B.2
Gallais, S.3
Dalmais, M.4
Chauvin, S.5
Clepet, C.6
Aubourg, S.7
Rameau, C.8
Caboche, M.9
Bendahmane, A.10
-
60
-
-
78651258606
-
Engineering melon plants with improved fruit shelf life using the TILLING approach
-
Dahmani-Mardas, F.; Troadec, C.; Boualem, A.; Lévêque, S.; Alsadon, A.A.; Aldoss, A.A.; Dogimont, C.; Bendahmane, A. Engineering melon plants with improved fruit shelf life using the TILLING approach. PLoS One, 2010, 5(12), e15776.
-
(2010)
PLoS One
, vol.5
, Issue.12
-
-
Dahmani-Mardas, F.1
Troadec, C.2
Boualem, A.3
Lévêque, S.4
Alsadon, A.A.5
Aldoss, A.A.6
Dogimont, C.7
Bendahmane, A.8
-
61
-
-
33749541238
-
Alternative EcoTILLING protocol for rapid, cost-effective single-nucleotide polymorphism discovery and genotyping in rice (Oryza sativa L.)
-
Kadaru, S.B.; Yadav, A.S.; Fjellstrom, R.G.; Oard, J.H. Alternative EcoTILLING protocol for rapid, cost-effective single-nucleotide polymorphism discovery and genotyping in rice (Oryza sativa L.). Plant Mol. Biol. Reporter, 2006, 24, 3-22.
-
(2006)
Plant Mol. Biol. Reporter
, vol.24
, pp. 3-22
-
-
Kadaru, S.B.1
Yadav, A.S.2
Fjellstrom, R.G.3
Oard, J.H.4
-
62
-
-
33748690972
-
EcoTILLING for the identification of allelic variation in the powdery mildew resistance genes mlo and Mla of barley
-
Mejlhede, N.; Kyjovska, Z.; Backes, G.; Burhenne, K.; Rasmussen, S.K.; Jahoor, A. EcoTILLING for the identification of allelic variation in the powdery mildew resistance genes mlo and Mla of barley. Plant Breed., 2006, 125, 461-467.
-
(2006)
Plant Breed.
, vol.125
, pp. 461-467
-
-
Mejlhede, N.1
Kyjovska, Z.2
Backes, G.3
Burhenne, K.4
Rasmussen, S.K.5
Jahoor, A.6
-
63
-
-
54849421963
-
Analysis of Pina and Pinb alleles in the microcore collections of Chinese wheat germplasm by EcoTILLING and identification of a novel Pinb allele
-
Wang, J.; Sun, J.Z.; Liu, D.C.; Yang, W.L.; Wang, D.W.; Tong, Y.P.; Zhang, A.M. Analysis of Pina and Pinb alleles in the microcore collections of Chinese wheat germplasm by EcoTILLING and identification of a novel Pinb allele. J. Cereal Sci., 2008, 48, 836-842.
-
(2008)
J. Cereal Sci.
, vol.48
, pp. 836-842
-
-
Wang, J.1
Sun, J.Z.2
Liu, D.C.3
Yang, W.L.4
Wang, D.W.5
Tong, Y.P.6
Zhang, A.M.7
-
64
-
-
58549105934
-
Identification and characterization of a hypoallergenic ortholog of Ara h 2.01
-
Ramos, M.L.; Huntley, J.J.; Maleki, S.J.; Ozias-Akins, P. Identification and characterization of a hypoallergenic ortholog of Ara h 2.01. Plant Mol. Biol., 2009, 69, 325-335.
-
(2009)
Plant Mol. Biol.
, vol.69
, pp. 325-335
-
-
Ramos, M.L.1
Huntley, J.J.2
Maleki, S.J.3
Ozias-Akins, P.4
-
65
-
-
63149104088
-
CEL I Nuclease Digestion for SNP Discovery and Marker Development in Common Bean (Phaseolus vulgaris L.)
-
Galeano, C.H.; Gomez, M.; Rodriguez, L.M.; Blair, M.W. CEL I Nuclease Digestion for SNP Discovery and Marker Development in Common Bean (Phaseolus vulgaris L.). Crop Sci., 2009, 49, 381-394.
-
(2009)
Crop Sci.
, vol.49
, pp. 381-394
-
-
Galeano, C.H.1
Gomez, M.2
Rodriguez, L.M.3
Blair, M.W.4
-
66
-
-
54849421963
-
Analysis of Pina and Pinb alleles in the microcore collections of Chinese wheat germplasm by EcoTILLING and identification of a novel Pinb allele
-
Wang, J.; Sun, J.Z.; Liu, D.C.; Yang, W.L.; Wang, D.W.; Tong, Y.P.; Zhang, A.M. Analysis of Pina and Pinb alleles in the microcore collections of Chinese wheat germplasm by EcoTILLING and identification of a novel Pinb allele. J. Cereal Sci., 2008, 48, 836-842.
-
(2008)
J. Cereal Sci.
, vol.48
, pp. 836-842
-
-
Wang, J.1
Sun, J.Z.2
Liu, D.C.3
Yang, W.L.4
Wang, D.W.5
Tong, Y.P.6
Zhang, A.M.7
-
67
-
-
58549105934
-
Identification and characterization of a hypoallergenic ortholog of Ara h 2.01
-
Ramos, M.L.; Huntley, J.J.; Maleki, S.J.; Ozias-Akins, P. Identification and characterization of a hypoallergenic ortholog of Ara h 2.01. Plant Mol. Biol., 2009, 69, 325-335.
-
(2009)
Plant Mol. Biol.
, vol.69
, pp. 325-335
-
-
Ramos, M.L.1
Huntley, J.J.2
Maleki, S.J.3
Ozias-Akins, P.4
-
68
-
-
77955323588
-
An induced mutation in tomato eIF4E leads to immunity to two potyviruses
-
Piron, F.; Nicolaï, M.; Minoïa, S.; Piednoir, E.; Moretti, A.; Salgues, A.; Zamir, D.; Caranta, C.; Bendahmane, A. An induced mutation in tomato eIF4E leads to immunity to two potyviruses. PLoS One, 2010, 5(6), e11313.
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Piron, F.1
Nicolaï, M.2
Minoïa, S.3
Piednoir, E.4
Moretti, A.5
Salgues, A.6
Zamir, D.7
Caranta, C.8
Bendahmane, A.9
-
69
-
-
78649657850
-
EcoTILLING in Capsicum species: Searching for new virus resistances
-
Ibiza, V.P.; Cañizares, J.; Nuez, F. EcoTILLING in Capsicum species: searching for new virus resistances. BMC Genomics, 2010, 11, 631.
-
(2010)
BMC Genomics
, vol.11
, pp. 631
-
-
Ibiza, V.P.1
Cañizares, J.2
Nuez, F.3
-
70
-
-
77952425335
-
Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
-
Deschamps, S.; Campbell, M.A. Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery. Mol. Breed., 2010, 25, 553-570.
-
(2010)
Mol. Breed.
, vol.25
, pp. 553-570
-
-
Deschamps, S.1
Campbell, M.A.2
-
71
-
-
62349084778
-
SNP identification in crop plants
-
Ganal, M.W.; Altmann, T.; Röder, M.S. SNP identification in crop plants. Curr. Opin. Plant Biol., 2009, 12, 211-217.
-
(2009)
Curr. Opin. Plant Biol.
, vol.12
, pp. 211-217
-
-
Ganal, M.W.1
Altmann, T.2
Röder, M.S.3
-
72
-
-
68249140383
-
The 1001 genomes project for Arabidopsis thaliana
-
Weigel, D.; Mott, R. The 1001 genomes project for Arabidopsis thaliana. Genome Biol., 2009, 10, 107.
-
(2009)
Genome Biol.
, vol.10
, pp. 107
-
-
Weigel, D.1
Mott, R.2
-
73
-
-
77952429403
-
Large-scale discovery of gene-enriched SNPs
-
Gore, M.A.; Wright, M.H.; Ersoz, E.S.; Bouffard, P.; Szekeres, E.S.; Jarvie, T.P.; Hurwitz, B.L.; Narechania, A.; Harkins, T.T.; Grills, G.S.; Ware, D.H.; Buckler, E.S. Large-scale discovery of gene-enriched SNPs. Plant Genome, 2009, 2, 121-133.
-
(2009)
Plant Genome
, vol.2
, pp. 121-133
-
-
Gore, M.A.1
Wright, M.H.2
Ersoz, E.S.3
Bouffard, P.4
Szekeres, E.S.5
Jarvie, T.P.6
Hurwitz, B.L.7
Narechania, A.8
Harkins, T.T.9
Grills, G.S.10
Ware, D.H.11
Buckler, E.S.12
-
74
-
-
77952534535
-
Rapid genomic characterization of the genus Vitis
-
Myles, S.; Chia, J.M.; Hurwitz, B.; Simon, C.; Zhong, G.Y.; Buckler, E.; Ware, D. Rapid genomic characterization of the genus Vitis. PLoS One, 2010, 5(1), e8219.
-
(2010)
PLoS One
, vol.5
, Issue.1
-
-
Myles, S.1
Chia, J.M.2
Hurwitz, B.3
Simon, C.4
Zhong, G.Y.5
Buckler, E.6
Ware, D.7
-
75
-
-
78751512972
-
Development of genome-wide SNP assays for rice
-
McCouch, S.R.; Zhao, K.; Wright, M.; Tung, C.W.; Ebana, K.; Thomson, M.; Reynolds, A.; Wang, D.; DeClerck, G.; Ali, M.L.; McClung, A.; Eizenga, G.; Bustamante, C. Development of genome-wide SNP assays for rice. Breed. Sci., 2010, 60, 524-535.
-
(2010)
Breed. Sci.
, vol.60
, pp. 524-535
-
-
McCouch, S.R.1
Zhao, K.2
Wright, M.3
Tung, C.W.4
Ebana, K.5
Thomson, M.6
Reynolds, A.7
Wang, D.8
DeClerck, G.9
Ali, M.L.10
McClung, A.11
Eizenga, G.12
Bustamante, C.13
-
76
-
-
77955412222
-
SNP discovery by high-throughput sequencing in soybean
-
Wu, X.; Ren, C.; Joshi, T.; Vuong, T.; Xu, D.; Nguyen, H.T. SNP discovery by high-throughput sequencing in soybean. BMC Genomics, 2010, 11, 469.
-
(2010)
BMC Genomics
, vol.11
, pp. 469
-
-
Wu, X.1
Ren, C.2
Joshi, T.3
Vuong, T.4
Xu, D.5
Nguyen, H.T.6
-
77
-
-
79951727241
-
Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer
-
Deschamps, S.; La Rota, M.; Ratashak, J.P.; Biddle, P.; Thureen, D.; Farmer, A.; Luck, S.; Beatty, M.; Nagasawa, N.; Michael, L.; Llaca, V.; Sakai, H.; May, G.; Lightner, J.; Campbell, M.A. Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer. Plant Genome, 2010, 3, 1.
-
(2010)
Plant Genome
, vol.3
, pp. 1
-
-
Deschamps, S.1
la Rota, M.2
Ratashak, J.P.3
Biddle, P.4
Thureen, D.5
Farmer, A.6
Luck, S.7
Beatty, M.8
Nagasawa, N.9
Michael, L.10
Llaca, V.11
Sakai, H.12
May, G.13
Lightner, J.14
Campbell, M.A.15
-
78
-
-
64749112341
-
Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
-
Bundock, P.C.; Eliott, F.G.; Ablett, G.; Benson, A.D.; Casu, R.E.; Aitken, K.S.; Henry, R.J. Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnol. J., 2009, 7, 347-354.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 347-354
-
-
Bundock, P.C.1
Eliott, F.G.2
Ablett, G.3
Benson, A.D.4
Casu, R.E.5
Aitken, K.S.6
Henry, R.J.7
-
79
-
-
64749090107
-
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
-
Trick, M.; Long, Y.; Meng, J.; Bancroft, I. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol. J., 2009, 7, 334-346.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 334-346
-
-
Trick, M.1
Long, Y.2
Meng, J.3
Bancroft, I.4
-
80
-
-
79251590266
-
Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology
-
Oliver, R.E.; Lazo, G.R.; Lutz, J.D.; Rubenfield, M.J.; Tinker, N.A.; Anderson, J.M.; Morehead N.H.W.; Adhikary, D.; Jellen, E.N.; Maughan, P.J.; Brown Guedira, G.L.; Chao, S.; Beattie, A.D.; Carson, M.L.; Rines, H.W.; Obert, D.E.; Bonman, J.M.; Jackson, E.W. Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology. BMC Genomics, 2011, 12, 77.
-
(2011)
BMC Genomics
, vol.12
, pp. 77
-
-
Oliver, R.E.1
Lazo, G.R.2
Lutz, J.D.3
Rubenfield, M.J.4
Tinker, N.A.5
Anderson, J.M.6
Morehead, N.H.W.7
Adhikary, D.8
Jellen, E.N.9
Maughan, P.J.10
Brown Guedira, G.L.11
Chao, S.12
Beattie, A.D.13
Carson, M.L.14
Rines, H.W.15
Obert, D.E.16
Bonman, J.M.17
Jackson, E.W.18
-
81
-
-
75649095276
-
A SNP discovery method to assess variant allele probability from next-generation resequencing data
-
Shen, Y.; Wan, Z.; Coarfa, C.; Drabek, R.; Chen, L.; Ostrowski, E.A.; Liu, Y.; Weinstock, G.M.; Wheeler, D.A.; Gibbs, R.A.; Yu, F. A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res., 2010, 20, 273-280.
-
(2010)
Genome Res.
, vol.20
, pp. 273-280
-
-
Shen, Y.1
Wan, Z.2
Coarfa, C.3
Drabek, R.4
Chen, L.5
Ostrowski, E.A.6
Liu, Y.7
Weinstock, G.M.8
Wheeler, D.A.9
Gibbs, R.A.10
Yu, F.11
-
82
-
-
85167693926
-
Development, characterization, and linkage mapping of single nucleotide polymorphisms in the grain amaranths (Amaranthus sp.)
-
Maughan, P. J; Smith, S.M.; Fairbanks, D.J.; Jellen, E.N. Development, characterization, and linkage mapping of single nucleotide polymorphisms in the grain amaranths (Amaranthus sp.). Plant Genome, 2011, 4, 92-101.
-
(2011)
Plant Genome
, vol.4
, pp. 92-101
-
-
Maughan, P.J.1
Smith, S.M.2
Fairbanks, D.J.3
Jellen, E.N.4
-
83
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
Hyten, D.L.; Cannon, S.B.; Song, Q.; Weeks, N.; Fickus, E.W.; Shoemaker, R.C.; Specht, J.E.; Farmer, A.D.; May, G.D.; Cregan, P.B. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics, 2010, 11, 38.
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.L.1
Cannon, S.B.2
Song, Q.3
Weeks, N.4
Fickus, E.W.5
Shoemaker, R.C.6
Specht, J.E.7
Farmer, A.D.8
May, G.D.9
Cregan, P.B.10
-
84
-
-
78951478131
-
Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence
-
You, F.M.; Huo, N.; Deal, K.R.; Gu, Y.Q.; Luo, M.C.; McGuire, P.E.; Dvorak, J.; Anderson, O.D. Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics, 2011, 12, 59.
-
(2011)
BMC Genomics
, vol.12
, pp. 59
-
-
You, F.M.1
Huo, N.2
Deal, K.R.3
Gu, Y.Q.4
Luo, M.C.5
McGuire, P.E.6
Dvorak, J.7
Anderson, O.D.8
-
85
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
Barbazuk, W.B.; Emrich, S.J.; Hsin, D.; Chen, L.; Li, P.; Schnable, P.S. SNP discovery via 454 transcriptome sequencing. Plant J., 2007, 51, 910-918.
-
(2007)
Plant J.
, vol.51
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Hsin, D.3
Chen, L.4
Li, P.5
Schnable, P.S.6
-
86
-
-
48249125753
-
High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
-
Novaes, E.; Drost, D.R.; Farmerie, W.G.; Pappas, G.J. Jr.; Grattapaglia, D.; Sederoff, R.R.; Kirst, M. High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics, 2008, 9, 312.
-
(2008)
BMC Genomics
, vol.9
, pp. 312
-
-
Novaes, E.1
Drost, D.R.2
Farmerie, W.G.3
Pappas Jr., G.J.4
Grattapaglia, D.5
Sederoff, R.R.6
Kirst, M.7
-
87
-
-
78549262404
-
Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: Oak
-
Ueno, S.; Le Provost, G.; Léger, V.; Klopp, C.; Noirot, C.; Frigerio, JM.; Salin, F.; Salse, J.; Abrouk, M.; Murat, F.; Brendel, O.; Derory, J.; Abadie, P.; Léger, P.; Cabane, C.; Barré, A.; de Daruvar, A.; Couloux, A.; Wincker, P.; Reviron, M.P.; Kremer, A.; Plomion, C. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics, 2010, 11, 650.
-
(2010)
BMC Genomics
, vol.11
, pp. 650
-
-
Ueno, S.1
Le Provost, G.2
Léger, V.3
Klopp, C.4
Noirot, C.5
Frigerio, J.M.6
Salin, F.7
Salse, J.8
Abrouk, M.9
Murat, F.10
Brendel, O.11
Derory, J.12
Abadie, P.13
Léger, P.14
Cabane, C.15
Barré, A.16
de Daruvar, A.17
Couloux, A.18
Wincker, P.19
Reviron, M.P.20
Kremer, A.21
Plomion, C.22
more..
-
88
-
-
78349278490
-
A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica
-
Vidal, R.O.; Mondego, J.M.; Pot, D.; Ambrósio, A.B.; Andrade, A.C.; Pereira, L.F.; Colombo, C.A.; Vieira, L.G.; Carazzolle, M.F.; Pereira, G.A. A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica. Plant Physiol., 2010, 154, 1053-1066.
-
(2010)
Plant Physiol.
, vol.154
, pp. 1053-1066
-
-
Vidal, R.O.1
Mondego, J.M.2
Pot, D.3
Ambrósio, A.B.4
Andrade, A.C.5
Pereira, L.F.6
Colombo, C.A.7
Vieira, L.G.8
Carazzolle, M.F.9
Pereira, G.A.10
-
89
-
-
77958138370
-
A sweet potato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
-
Schafleitner, R.; Tincopa, L.R.; Palomino, O.; Rossel, G.; Robles, R.F.; Alagon, R.; Rivera, C.; Quispe, C.; Rojas, L.; Pacheco, J.A.; Solis, J.; Cerna, D.; Kim, J.Y.; Hou, J.; Simon, R. A sweet potato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers. BMC Genomics, 2010, 11, 604.
-
(2010)
BMC Genomics
, vol.11
, pp. 604
-
-
Schafleitner, R.1
Tincopa, L.R.2
Palomino, O.3
Rossel, G.4
Robles, R.F.5
Alagon, R.6
Rivera, C.7
Quispe, C.8
Rojas, L.9
Pacheco, J.A.10
Solis, J.11
Cerna, D.12
Kim, J.Y.13
Hou, J.14
Simon, R.15
-
90
-
-
79951828683
-
De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification
-
Garg, R.; Patel, R.K.; Tyagi, A.K.; Jain, M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res., 2011, 18, 53-63.
-
(2011)
DNA Res.
, vol.18
, pp. 53-63
-
-
Garg, R.1
Patel, R.K.2
Tyagi, A.K.3
Jain, M.4
-
91
-
-
78649818997
-
SNP discovery and linkage map construction in cultivated tomato
-
Shirasawa, K.; Isobe, S.; Hirakawa, H.; Asamizu, E.; Fukuoka, H.; Just, D.; Rothan, C.; Sasamoto, S.; Fujishiro, T.; Kishida, Y.; Kohara, M.; Tsuruoka, H.; Wada, T.; Nakamura, Y.; Sato, S.; Tabata, S. SNP discovery and linkage map construction in cultivated tomato. DNA Res., 2010, 17, 381-391.
-
(2010)
DNA Res.
, vol.17
, pp. 381-391
-
-
Shirasawa, K.1
Isobe, S.2
Hirakawa, H.3
Asamizu, E.4
Fukuoka, H.5
Just, D.6
Rothan, C.7
Sasamoto, S.8
Fujishiro, T.9
Kishida, Y.10
Kohara, M.11
Tsuruoka, H.12
Wada, T.13
Nakamura, Y.14
Sato, S.15
Tabata, S.16
-
92
-
-
77953600890
-
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
-
Guo, S.; Zheng, Y.; Joung, J.G.; Liu, S.; Zhang, Z.; Crasta, O.R.; Sobral, B.W.; Xu, Y.; Huang, S.; Fei, Z. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010, 11, 384.
-
(2010)
BMC Genomics
, vol.11
, pp. 384
-
-
Guo, S.1
Zheng, Y.2
Joung, J.G.3
Liu, S.4
Zhang, Z.5
Crasta, O.R.6
Sobral, B.W.7
Xu, Y.8
Huang, S.9
Fei, Z.10
-
93
-
-
85169143811
-
Melon transcriptome characterization SSRs and SNPs discovery for high throughput genotyping across the species
-
Blanca, J.; Cañizares, J.; Ziarsolo, P.; Esteras, C.; Mir, G.; Nuez, F.; García-Mas, J.; Picó, B. Melon transcriptome characterization. SSRs and SNPs discovery for high throughput genotyping across the species. Plant Genome, 2011, 4, 118-131.
-
(2011)
Plant Genome
, vol.4
, pp. 118-131
-
-
Blanca, J.1
Cañizares, J.2
Ziarsolo, P.3
Esteras, C.4
Mir, G.5
Nuez, F.6
García-Mas, J.7
Picó, B.8
-
94
-
-
79551683707
-
Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
-
Narina, S.S.; Buyyarapu, R.; Kottapalli, K.R.; Sartie, A.M.; Ali, M.I.; Robert, A.; Hodeba, M.J.D.; Sayre, B.L.; Scheffler, B.E. Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.). BMC Genomics, 2011, 12, 100.
-
(2011)
BMC Genomics
, vol.12
, pp. 100
-
-
Narina, S.S.1
Buyyarapu, R.2
Kottapalli, K.R.3
Sartie, A.M.4
Ali, M.I.5
Robert, A.6
Hodeba, M.J.D.7
Sayre, B.L.8
Scheffler, B.E.9
-
95
-
-
79955120860
-
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent dell wall composition in stems
-
Yang, S.S.; Tu, Z.J.; Cheung, F.; Xu, W.W.; Lamb, J.F.S.; Jung, H.J.G.; Vance, C.P.; Gronwald, J.W. Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent dell wall composition in stems. BMC Genomics, 2011, 12, 199.
-
(2011)
BMC Genomics
, vol.12
, pp. 199
-
-
Yang, S.S.1
Tu, Z.J.2
Cheung, F.3
Xu, W.W.4
Lamb, J.F.S.5
Jung, H.J.G.6
Vance, C.P.7
Gronwald, J.W.8
-
96
-
-
78049332150
-
Genomewide association studies of 14 agronomic traits in rice landraces
-
Huang, X.H.; Wei, X.H.; Sang, T.; Zhao, Q.A.; Feng, Q.; Zhao, Y.; Li, C.Y.; Zhu, C.R.; Lu, T.T.; Zhang, Z.W.; Li, M.; Fan, D.L.; Guo, Y.L.; Wang, A.; Wang, L.; Deng, L.W.; Li, W.J.; Lu, Y.Q.; Weng, Q.J.; Liu, K.Y.; Huang, T.; Zhou, T.Y.; Jing, Y.F.; Li, W.; Lin, Z.; Buckler, E.S.; Qian, Q.A.; Zhang, Q.F.; Li, J.Y.; Han, B. Genomewide association studies of 14 agronomic traits in rice landraces. Nat. Genet., 2010, 42, 961-976.
-
(2010)
Nat. Genet.
, vol.42
, pp. 961-976
-
-
Huang, X.H.1
Wei, X.H.2
Sang, T.3
Zhao, Q.A.4
Feng, Q.5
Zhao, Y.6
Li, C.Y.7
Zhu, C.R.8
Lu, T.T.9
Zhang, Z.W.10
Li, M.11
Fan, D.L.12
Guo, Y.L.13
Wang, A.14
Wang, L.15
Deng, L.W.16
Li, W.J.17
Lu, Y.Q.18
Weng, Q.J.19
Liu, K.Y.20
Huang, T.21
Zhou, T.Y.22
Jing, Y.F.23
Li, W.24
Lin, Z.25
Buckler, E.S.26
Qian, Q.A.27
Zhang, Q.F.28
Li, J.Y.29
Han, B.30
more..
-
97
-
-
79953027679
-
Genome-wide association mapping of Fusarium head blight resistance in contemporary barley breeding germplasm
-
Massman, J.; Cooper, B.; Horsley, R.; Neate, S.; Dill-Macky, R.; Chao, S.; Dong, Y.; Schwarz, P.; Muehlbauer, G.J.; Smith, K.P. Genome-wide association mapping of Fusarium head blight resistance in contemporary barley breeding germplasm. Mol. Breed., 2011, 27, 439-454.
-
(2011)
Mol. Breed.
, vol.27
, pp. 439-454
-
-
Massman, J.1
Cooper, B.2
Horsley, R.3
Neate, S.4
Dill-Macky, R.5
Chao, S.6
Dong, Y.7
Schwarz, P.8
Muehlbauer, G.J.9
Smith, K.P.10
-
98
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
Close, T.J.; Bhat, P.R.; Lonardi, S.; Wu, Y.H.; Rostoks, N.; Ramsay, L.; Druka, A.; Stein, N.; Svensson, J.T.; Wanamaker, S.; Bozdag, S.; Roose, M.L.; Moscou, M.J.; Chao, S.A.M.; Varshney, R.K.; Szucs, P.; Sato, K.; Hayes, P.M.; Matthews, D.E.; Kleinhofs, A.; Muehlbauer, G.J.; DeYoung, J.; Marshall, D.F.; Madishetty, K.; Fenton, R.D.; Condamine, P.; Graner, A.; Waugh, R. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics, 2009, 10, 582.
-
(2009)
BMC Genomics
, vol.10
, pp. 582
-
-
Close, T.J.1
Bhat, P.R.2
Lonardi, S.3
Wu, Y.H.4
Rostoks, N.5
Ramsay, L.6
Druka, A.7
Stein, N.8
Svensson, J.T.9
Wanamaker, S.10
Bozdag, S.11
Roose, M.L.12
Moscou, M.J.13
Chao, S.A.M.14
Varshney, R.K.15
Szucs, P.16
Sato, K.17
Hayes, P.M.18
Matthews, D.E.19
Kleinhofs, A.20
Muehlbauer, G.J.21
DeYoung, J.22
Marshall, D.F.23
Madishetty, K.24
Fenton, R.D.25
Condamine, P.26
Graner, A.27
Waugh, R.28
more..
-
99
-
-
36949038456
-
Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize
-
Belo, A.; Zheng, P.Z.; Luck, S.; Shen, B.; Meyer, D.J.; Li, B.L.; Tingey, S.; Rafalski, A. Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol. Genet. Genomics, 2008, 279, 1-10.
-
(2008)
Mol. Genet. Genomics
, vol.279
, pp. 1-10
-
-
Belo, A.1
Zheng, P.Z.2
Luck, S.3
Shen, B.4
Meyer, D.J.5
Li, B.L.6
Tingey, S.7
Rafalski, A.8
-
100
-
-
79251575784
-
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population
-
Kump, K.L.; Bradbury, P.J.; Wisser, R.J.; Buckler, E.S.; Belcher, A.R.; Oropeza-Rosas, M.A.; Zwonitzer, J.C.; Kresovich, S.; McMullen, M.D.; Ware, D.; Balint-Kurti, P.J.; Holland, J.B. Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat. Genet., 2011, 43, 163-168.
-
(2011)
Nat. Genet.
, vol.43
, pp. 163-168
-
-
Kump, K.L.1
Bradbury, P.J.2
Wisser, R.J.3
Buckler, E.S.4
Belcher, A.R.5
Oropeza-Rosas, M.A.6
Zwonitzer, J.C.7
Kresovich, S.8
McMullen, M.D.9
Ware, D.10
Balint-Kurti, P.J.11
Holland, J.B.12
-
101
-
-
78049242288
-
High-throughput SNP genotyping with the GoldenGate assay in maize
-
Yan, J.B.; Yang, X.H.; Shah, T.; Sanchez-Villeda, H.; Li, J.S.; Warburton, M.; Zhou, Y.; Crouch, J.H.; Xu, Y.B. High-throughput SNP genotyping with the GoldenGate assay in maize. Mol. Breed., 2009, 25, 441-451.
-
(2009)
Mol. Breed.
, vol.25
, pp. 441-451
-
-
Yan, J.B.1
Yang, X.H.2
Shah, T.3
Sanchez-Villeda, H.4
Li, J.S.5
Warburton, M.6
Zhou, Y.7
Crouch, J.H.8
Xu, Y.B.9
-
102
-
-
78049502244
-
A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.)
-
Emanuelli, F.; Battilana, J.; Costantini, L.; Le Cunff, L.; Boursiquot, J.M.; This, P.; Grando, M.S. A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.). BMC Plant Biol., 2010, 10, 241.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 241
-
-
Emanuelli, F.1
Battilana, J.2
Costantini, L.3
Le Cunff, L.4
Boursiquot, J.M.5
This, P.6
Grando, M.S.7
-
103
-
-
77955391799
-
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea
-
Deulvot, C.; Charrel, H.; Marty, A.; Jacquin, F.; Donnadieu, C.; Lejeune-Hénaut, I.; Burstin, J.; Aubert, G. Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea. BMC Genomics, 2011, 11, 468.
-
(2011)
BMC Genomics
, vol.11
, pp. 468
-
-
Deulvot, C.1
Charrel, H.2
Marty, A.3
Jacquin, F.4
Donnadieu, C.5
Lejeune-Hénaut, I.6
Burstin, J.7
Aubert, G.8
-
104
-
-
78650725232
-
Genome-wide association mapping: A case study in bread wheat (Triticum aestivum L.)
-
Neumann, K.; Kobiljski, B.; Dencic, S.; Varshney, R.K.; Borner, A. Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Mol. Breed., 2011, 27, 37-58.
-
(2011)
Mol. Breed.
, vol.27
, pp. 37-58
-
-
Neumann, K.1
Kobiljski, B.2
Dencic, S.3
Varshney, R.K.4
Borner, A.5
-
105
-
-
78650614679
-
Population-and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)
-
Chao, S.; Dubcovsky, J.; Luo, M.C.; Baenziger, S.P.; Matnyazov, R.; Clark, D.R.; Talbert, L.E.; Anderson, J.A.; Dreisigacker, S.; Glover, K.; Chen, J.; Campbell, K.; Bruckner, P.L.; Rudd, J.C.; Haley, S.; Carver, B.F.; Perry, S.; Sorrells, M.E.; Akhunov, E.D. Population-and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics, 2011, 11, 727.
-
(2011)
BMC Genomics
, vol.11
, pp. 727
-
-
Chao, S.1
Dubcovsky, J.2
Luo, M.C.3
Baenziger, S.P.4
Matnyazov, R.5
Clark, D.R.6
Talbert, L.E.7
Anderson, J.A.8
Dreisigacker, S.9
Glover, K.10
Chen, J.11
Campbell, K.12
Bruckner, P.L.13
Rudd, J.C.14
Haley, S.15
Carver, B.F.16
Perry, S.17
Sorrells, M.E.18
Akhunov, E.D.19
-
106
-
-
79955930975
-
Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression
-
Beaulieu, J.; Doerksen, T.; Boyle, B.; Clément, S.; Deslauriers, M.; Beauseigle, S.; Poulin, P.; Lenz, P.; Caron, S.; Rigault, P.; Bicho, P.; Bousquet, J.; Mackay, J. Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression. Genetics, 2011, 188, 197-214.
-
(2011)
Genetics
, vol.188
, pp. 197-214
-
-
Beaulieu, J.1
Doerksen, T.2
Boyle, B.3
Clément, S.4
Deslauriers, M.5
Beauseigle, S.6
Poulin, P.7
Lenz, P.8
Caron, S.9
Rigault, P.10
Bicho, P.11
Bousquet, J.12
Mackay, J.13
-
107
-
-
70949092573
-
Laboratory methods for highthroughput genotyping
-
Edenberg, H.J.; Yunlong, L. Laboratory methods for highthroughput genotyping. Cold Spring Harb. Protoc., 2009, 16, 183-193.
-
(2009)
Cold Spring Harb. Protoc.
, vol.16
, pp. 183-193
-
-
Edenberg, H.J.1
Yunlong, L.2
-
108
-
-
65349159741
-
New technologies for ultrahigh throughput genotyping in plants
-
Appleby, N.; Edwards, D.; Batley, J. New technologies for ultrahigh throughput genotyping in plants. Methods Mol. Biol., 2009, 513, 19-39.
-
(2009)
Methods Mol. Biol.
, vol.513
, pp. 19-39
-
-
Appleby, N.1
Edwards, D.2
Batley, J.3
-
109
-
-
58149299721
-
Medium-to high-throughput SNP genotyping using VeraCode microbeads
-
Lin, C.H.; Yeakley, J.M.; McDaniel, T.K.; Shen, R. Medium-to high-throughput SNP genotyping using VeraCode microbeads. Methods Mol. Biol., 2009, 496, 129-142.
-
(2009)
Methods Mol. Biol.
, vol.496
, pp. 129-142
-
-
Lin, C.H.1
Yeakley, J.M.2
McDaniel, T.K.3
Shen, R.4
-
110
-
-
59649090821
-
SNP genotyping using the Sequenom MassARRAY iPLEX platform
-
Gabriel, S.; Ziaugra, L.; Tabbaa, D. SNP genotyping using the Sequenom MassARRAY iPLEX platform. Curr. Protocols Human Genet., 2009, Suppl. 60, 2.12.1-2.12.18.
-
(2009)
Curr. Protocols Human Genet.
, Issue.SUPPL. 60
, pp. 2121-21218
-
-
Gabriel, S.1
Ziaugra, L.2
Tabbaa, D.3
-
111
-
-
77956090475
-
Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)
-
Eckert, A.J.; van Heerwaarden, J.; Wegrzyn, J.L.; Nelson, C.D.; Ross-Ibarra, J.; Gonzalez-Martinez, S.C.; Neale, D.B. Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics, 2010, 185, 969-982.
-
(2010)
Genetics
, vol.185
, pp. 969-982
-
-
Eckert, A.J.1
van Heerwaarden, J.2
Wegrzyn, J.L.3
Nelson, C.D.4
Ross-Ibarra, J.5
Gonzalez-Martinez, S.C.6
Neale, D.B.7
-
112
-
-
57349107224
-
High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)
-
Eckert, A.J.; Pande, B.; Ersoz, E.S.; Wright, M.H.; Rashbrook, V.K.; Nicolet, C.M.; Neale, D.B. High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genet. Genomes, 2009, 5, 225-234.
-
(2009)
Tree Genet. Genomes
, vol.5
, pp. 225-234
-
-
Eckert, A.J.1
Pande, B.2
Ersoz, E.S.3
Wright, M.H.4
Rashbrook, V.K.5
Nicolet, C.M.6
Neale, D.B.7
-
113
-
-
74249097512
-
High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing
-
Liu, S.; Chen, H.D.; Makarevitch, I.; Shirmer, R.; Emrich, S.J.; Dietrich, C.R.; Barbazuk, W.B.; Springer, N.M.; Schnable, P.S. High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics, 2010, 184, 19-26.
-
(2010)
Genetics
, vol.184
, pp. 19-26
-
-
Liu, S.1
Chen, H.D.2
Makarevitch, I.3
Shirmer, R.4
Emrich, S.J.5
Dietrich, C.R.6
Barbazuk, W.B.7
Springer, N.M.8
Schnable, P.S.9
-
114
-
-
79953882464
-
A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus
-
Neves, L.; Mamani, E.; Alfenas, A.; Kirst, M.; Grattapaglia, D. A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus. BMC Genomics, 2011, 12, 189.
-
(2011)
BMC Genomics
, vol.12
, pp. 189
-
-
Neves, L.1
Mamani, E.2
Alfenas, A.3
Kirst, M.4
Grattapaglia, D.5
-
115
-
-
68349151220
-
A high-density transcript linkage map of barley derived from a single population
-
Sato, K.; Nankaku, N.; Takeda, K. A high-density transcript linkage map of barley derived from a single population. Heredity, 2009, 103, 110-117.
-
(2009)
Heredity
, vol.103
, pp. 110-117
-
-
Sato, K.1
Nankaku, N.2
Takeda, K.3
-
116
-
-
78650792488
-
Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
-
Chutimanitsakun, Y.; Nipper, R.W.; Cuesta-Marcos, A.; Cistue, L.; Corey, A.; Filichkina, T.; Johnson, E.A.; Hayes, P.M. Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics, 2011, 12, 4.
-
(2011)
BMC Genomics
, vol.12
, pp. 4
-
-
Chutimanitsakun, Y.1
Nipper, R.W.2
Cuesta-Marcos, A.3
Cistue, L.4
Corey, A.5
Filichkina, T.6
Johnson, E.A.7
Hayes, P.M.8
-
117
-
-
78650618921
-
Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map
-
Celton, J.M.; Christoffels, A.; Sargent, D.J.; Xu, X.M.; Rees, D.J.G. Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map. BMC Biol., 2010, 8, 155.
-
(2010)
BMC Biol.
, vol.8
, pp. 155
-
-
Celton, J.M.1
Christoffels, A.2
Sargent, D.J.3
Xu, X.M.4
Rees, D.J.G.5
-
118
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
Huang, X. H, Feng, Q.; Qian, Q.; Zhao, Q.; Wang, L.; Wang, A.H.; Guan, J.P.; Fan, D.L.; Weng, Q.J.; Huang, T.; Dong, G.J.; Sang, T.; Han, B. High-throughput genotyping by whole-genome resequencing. Genome Res., 2009, 19, 1068-1076.
-
(2009)
Genome Res.
, vol.19
, pp. 1068-1076
-
-
Huang, X.H.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.H.6
Guan, J.P.7
Fan, D.L.8
Weng, Q.J.9
Huang, T.10
Dong, G.J.11
Sang, T.12
Han, B.13
-
119
-
-
78549272376
-
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.)
-
Xu, J.J.; Zhao, Q.A.; Du, P.N.; Xu, C.W.; Wang, B.H.; Feng, Q.; Liu, Q.Q.; Tang, S.Z.; Gu, M.H.; Han, B.; Liang, G.H. Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genomics, 2010, 11, 656.
-
(2010)
BMC Genomics
, vol.11
, pp. 656
-
-
Xu, J.J.1
Zhao, Q.A.2
Du, P.N.3
Xu, C.W.4
Wang, B.H.5
Feng, Q.6
Liu, Q.Q.7
Tang, S.Z.8
Gu, M.H.9
Han, B.10
Liang, G.H.11
-
120
-
-
77953796079
-
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
-
Xie, W.B.; Feng, Q.; Yu, H.H.; Huang, X.H.; Zhao, Q.A.; Xing, Y.Z.; Yu, S.B.; Han, B.; Zhang, Q.F. Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc. Natl. Acad. Sci. USA, 2010, 107, 10578-10583.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 10578-10583
-
-
Xie, W.B.1
Feng, Q.2
Yu, H.H.3
Huang, X.H.4
Zhao, Q.A.5
Xing, Y.Z.6
Yu, S.B.7
Han, B.8
Zhang, Q.F.9
-
121
-
-
84860537710
-
Soybean genomics research program strategic plan implementing research to meet 2012-2016 strategic milestones
-
Boerma, R.; Wilson, R.; Ready, E. Soybean genomics research program strategic plan implementing research to meet 2012-2016 strategic milestones. Plant Genome, 2011, 4, 1-11.
-
(2011)
Plant Genome
, vol.4
, pp. 1-11
-
-
Boerma, R.1
Wilson, R.2
Ready, E.3
-
122
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore, M.A.; Chia, J.M.; Elshire, R.J.; Sun, Q.; Ersoz, E.S.; Hurwitz, B.L.; Peiffer, J.A.; McMullen, M.D.; Grills, G.S.; Ross-Ibarra, J.; Ware, D.H.; Buckler, E.S. A first-generation haplotype map of maize. Science, 2009, 326, 1115-1117.
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Peiffer, J.A.7
McMullen, M.D.8
Grills, G.S.9
Ross-Ibarra, J.10
Ware, D.H.11
Buckler, E.S.12
-
123
-
-
84860542350
-
The Medicago truncatula HapMap project: Deep coverage sequencing of 30 inbred lines using Illumina's Solexa technology
-
San Diego, CA
-
Branca, A.; Paape, T.; Briskine, R.; Zhou, P.; Wang, S.; Denny, R.; Mudge, J.; Bharti, A.K.; Farmer, A.; May, G.D.; Tiffin, P.L.; Young, N.D. The Medicago truncatula HapMap project: deep coverage sequencing of 30 inbred lines using Illumina's Solexa technology. Plant & Animal Genomes XVIII Conference, San Diego, CA, 2010, P417.
-
(2010)
Plant & Animal Genomes XVIII Conference
-
-
Branca, A.1
Paape, T.2
Briskine, R.3
Zhou, P.4
Wang, S.5
Denny, R.6
Mudge, J.7
Bharti, A.K.8
Farmer, A.9
May, G.D.10
Tiffin, P.L.11
Young, N.D.12
-
124
-
-
68149145780
-
Genome wide SNP variation reveals relationships among landraces and modern varieties of rice
-
McNally, K.L.; Childs, K.L.; Bohnert, R.; Davidson, R.M.; Zhao, K.; Ulat, V.J.; Zeller, G.; Clark, R.M.; Hoen, D.R.; Bureau, T.E.; Stokowski, R.; Ballinger, D.G.; Frazer, K.A.; Cox, D.R.; Padhukasahasram, B.; Bustamante, C.D.; Weigel, D.; Mackill, D.J.; Bruskiewich, R.M.; Rätsch, G.; Buell, C.R.; Leung, H.; Leach, J.E. Genome wide SNP variation reveals relationships among landraces and modern varieties of rice. Proc. Natl. Acad. Sci. USA, 2009, 106, 12273-12278.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 12273-12278
-
-
McNally, K.L.1
Childs, K.L.2
Bohnert, R.3
Davidson, R.M.4
Zhao, K.5
Ulat, V.J.6
Zeller, G.7
Clark, R.M.8
Hoen, D.R.9
Bureau, T.E.10
Stokowski, R.11
Ballinger, D.G.12
Frazer, K.A.13
Cox, D.R.14
Padhukasahasram, B.15
Bustamante, C.D.16
Weigel, D.17
Mackill, D.J.18
Bruskiewich, R.M.19
Rätsch, G.20
Buell, C.R.21
Leung, H.22
Leach, J.E.23
more..
-
125
-
-
77951217695
-
Definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
-
Yamamoto, T.; Nagasaki, H.; Yonemaru, J.; Ebana, K.; Nakajima, M.; Shibaya, T.; Yano, M. Definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics, 2010, 11, 267.
-
(2010)
BMC Genomics
, vol.11
, pp. 267
-
-
Yamamoto, T.1
Nagasaki, H.2
Yonemaru, J.3
Ebana, K.4
Nakajima, M.5
Shibaya, T.6
Yano, M.7
-
126
-
-
67749148266
-
Imaging With 'phenomics,' plant scientists hope to shift breeding into overdrive
-
Finkel, E. Imaging. With 'phenomics,' plant scientists hope to shift breeding into overdrive. Science, 2009, 325, 380-381.
-
(2009)
Science
, vol.325
, pp. 380-381
-
-
Finkel, E.1
-
127
-
-
59249102518
-
Bulked segregant analysis using the GoldenGate assay to locate the Rpp3 locus that confers resistance to soybean rust in soybean
-
Hyten, D.L.; Smith, J.R.; Frederick, R.D.; Tucker, M.L.;Song, Q.; Cregan, P.B. Bulked segregant analysis using the GoldenGate assay to locate the Rpp3 locus that confers resistance to soybean rust in soybean. Crop Sci., 2009, 49, 265-271.
-
(2009)
Crop Sci.
, vol.49
, pp. 265-271
-
-
Hyten, D.L.1
Smith, J.R.2
Frederick, R.D.3
Tucker, M.L.4
Song, Q.5
Cregan, P.B.6
-
128
-
-
79952455243
-
Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster
-
Kang, H.X.; Weng, Y.Q.; Yang, Y.H.; Zhang, Z.H.; Zhang, S.P.; Mao, Z.C.; Cheng, G.H.; Gu, X.F.; Huang, S.W.; Xie, B.Y. Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster. Theor. Appl. Genet., 2011, 122, 795-803.
-
(2011)
Theor. Appl. Genet.
, vol.122
, pp. 795-803
-
-
Kang, H.X.1
Weng, Y.Q.2
Yang, Y.H.3
Zhang, Z.H.4
Zhang, S.P.5
Mao, Z.C.6
Cheng, G.H.7
Gu, X.F.8
Huang, S.W.9
Xie, B.Y.10
-
129
-
-
79952299301
-
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers
-
Yu, H.H.; Xie, W.B.; Wang, J.; Xing, Y.Z.; Xu, C.G.; Li, X.H.; Xiao, J.H.; Zhang, Q.F. Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One, 2011, 6(3), e17595.
-
(2011)
PLoS One
, vol.6
, Issue.3
-
-
Yu, H.H.1
Xie, W.B.2
Wang, J.3
Xing, Y.Z.4
Xu, C.G.5
Li, X.H.6
Xiao, J.H.7
Zhang, Q.F.8
-
130
-
-
78650984961
-
What can next generation do for you
-
Bräutigam, A.; Gowik, U. What can next generation do for you. Plant Biol., 2010, 12, 831-841.
-
(2010)
Plant Biol.
, vol.12
, pp. 831-841
-
-
Bräutigam, A.1
Gowik, U.2
-
131
-
-
68449083317
-
The genetic architecture of maize flowering time
-
Buckler, E.S.; Holland, J.B.; Bradbury, P.J.; Acharya, C.B.; Brown, P.J.; Browne, C.; Ersoz, E.; Flint-Garcia, S.; Garcia, A.; Glaubitz, J.C.; Goodman, M.M.; Harjes, C.; Guill, K.; Kroon, D.E.; Larsson, S.; Lepak, N.K.; Li, H.H.; Mitchell, S.E.; Pressoir, G.; Peiffer, J.A.; Rosas, M.O.; Rocheford, T.R.; Romay, M.C.; Romero, S.; Salvo, S.; Villeda, H.S.; da Silva, H.S.; Sun, Q.; Tian, F.; Upadyayula, N.; Ware, D.; Yates, H.; Yu, J.M.; Zhang, Z.W.; Kresovich, S.; McMullen, M.D. The genetic architecture of maize flowering time. Science, 2009, 325, 714-718.
-
(2009)
Science
, vol.325
, pp. 714-718
-
-
Buckler, E.S.1
Holland, J.B.2
Bradbury, P.J.3
Acharya, C.B.4
Brown, P.J.5
Browne, C.6
Ersoz, E.7
Flint-Garcia, S.8
Garcia, A.9
Glaubitz, J.C.10
Goodman, M.M.11
Harjes, C.12
Guill, K.13
Kroon, D.E.14
Larsson, S.15
Lepak, N.K.16
Li, H.H.17
Mitchell, S.E.18
Pressoir, G.19
Peiffer, J.A.20
Rosas, M.O.21
Rocheford, T.R.22
Romay, M.C.23
Romero, S.24
Salvo, S.25
Villeda, H.S.26
da Silva, H.S.27
Sun, Q.28
Tian, F.29
Upadyayula, N.30
Ware, D.31
Yates, H.32
Yu, J.M.33
Zhang, Z.W.34
Kresovich, S.35
McMullen, M.D.36
more..
-
132
-
-
40549107115
-
Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds
-
Andersen, J.R.; Zein, I.; Wenzel, G.; Darnhofer, B.; Eder, J.; Ouzunova, M.; Lubberstedt, T. Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds. BMC Plant Biol., 2008, 8, 2.
-
(2008)
BMC Plant Biol.
, vol.8
, pp. 2
-
-
Andersen, J.R.1
Zein, I.2
Wenzel, G.3
Darnhofer, B.4
Eder, J.5
Ouzunova, M.6
Lubberstedt, T.7
-
133
-
-
38349114236
-
Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification
-
Harjes, C.E.; Rocheford, T.R.; Bai, L.; Brutnell, T.P.; Kandianis, C.B.; Sowinski, S.G.; Stapleton, A.E.; Vallabhaneni, R.; Williams M.; Wurtzel E.T.; Yan, J.B.; Buckler ES. Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science, 2008, 319 330-333.
-
(2008)
Science
, vol.319
, pp. 330-333
-
-
Harjes, C.E.1
Rocheford, T.R.2
Bai, L.3
Brutnell, T.P.4
Kandianis, C.B.5
Sowinski, S.G.6
Stapleton, A.E.7
Vallabhaneni, R.8
Williams, M.9
Wurtzel, E.T.10
Yan, J.B.11
Buckler, E.S.12
-
134
-
-
39749176242
-
A phenylalanine in DGAT is a key determinant of oil content and composition in maize
-
Zheng, P.; Allen, W.B.; Roesler, K.; Williams, M.E.; Zhang, S.; Li, J.; Glassman, K.; Ranch, J.; Nubel, D.; Solawetz, W.; Bhattramakki, D.; Llaca, V.; Deschamps, S.; Zhong, G.Y.; Tarczynski, M.C.; Shen, B. A phenylalanine in DGAT is a key determinant of oil content and composition in maize. Nat. Genet., 2008, 40 367-372.
-
(2008)
Nat. Genet.
, vol.40
, pp. 367-372
-
-
Zheng, P.1
Allen, W.B.2
Roesler, K.3
Williams, M.E.4
Zhang, S.5
Li, J.6
Glassman, K.7
Ranch, J.8
Nubel, D.9
Solawetz, W.10
Bhattramakki, D.11
Llaca, V.12
Deschamps, S.13
Zhong, G.Y.14
Tarczynski, M.C.15
Shen, B.16
-
135
-
-
66149113967
-
Epistatic interactions between Opaque2 transcriptional activator and its target gene CyPPDK1 control kernel trait variation in maize
-
Manicacci, D.; Camus-Kulandaivelu, L.; Fourmann, M.; Arar, C.; Barrault, S.; Rousselet, A.; Feminias, N.; Consoli, L.; Frances, L.; Mechin, V.; Murigneux, A.; Prioul, J.L.; Charcosset, A.; Damerval, C. Epistatic interactions between Opaque2 transcriptional activator and its target gene CyPPDK1 control kernel trait variation in maize. Plant Physiol., 2009, 150 506-520.
-
(2009)
Plant Physiol.
, vol.150
, pp. 506-520
-
-
Manicacci, D.1
Camus-Kulandaivelu, L.2
Fourmann, M.3
Arar, C.4
Barrault, S.5
Rousselet, A.6
Feminias, N.7
Consoli, L.8
Frances, L.9
Mechin, V.10
Murigneux, A.11
Prioul, J.L.12
Charcosset, A.13
Damerval, C.14
-
136
-
-
77953233453
-
Genomewide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell, S.; Huang, Y.S.; Vilhjalmsson, B.J.; Willems, G.; Horton, M.; Li, Y.; Meng, D.Z.; Platt, A.; Tarone, A.M.; Hu, T.T.; Jiang, R.; Muliyati, N.W.; Zhang, X.; Amer, M.A.; Baxter, I.; Brachi, B.; Chory, J.; Dean, C.; Debieu, M.; de Meaux, J.; Ecker, J.R.; Faure, N.; Kniskern, J.M.; Jones, J.D.G.; Michael, T.; Nemri, A.; Roux, F.; Salt, D.E.; Tang, C.L.; Todesco, M.; Traw, M.B.; Weigel, D.; Marjoram, P.; Borevitz, J.O.; Bergelson, J.; Nordborg, M. Genomewide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature, 2010, 465, 627-631.
-
(2010)
Nature
, vol.465
, pp. 627-631
-
-
Atwell, S.1
Huang, Y.S.2
Vilhjalmsson, B.J.3
Willems, G.4
Horton, M.5
Li, Y.6
Meng, D.Z.7
Platt, A.8
Tarone, A.M.9
Hu, T.T.10
Jiang, R.11
Muliyati, N.W.12
Zhang, X.13
Amer, M.A.14
Baxter, I.15
Brachi, B.16
Chory, J.17
Dean, C.18
Debieu, M.19
de Meaux, J.20
Ecker, J.R.21
Faure, N.22
Kniskern, J.M.23
Jones, J.D.G.24
Michael, T.25
Nemri, A.26
Roux, F.27
Salt, D.E.28
Tang, C.L.29
Todesco, M.30
Traw, M.B.31
Weigel, D.32
Marjoram, P.33
Borevitz, J.O.34
Bergelson, J.35
Nordborg, M.36
more..
-
137
-
-
72349088086
-
Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1
-
Simko, I.; Pechenick, D.A.; McHale, L.K.; Truco, L.J.; Ochoa, O.E.; Michelmore, R.W.; Scheffler, B.E. Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. BMC Plant Biol., 2009, 9 135-151.
-
(2009)
BMC Plant Biol.
, vol.9
, pp. 135-151
-
-
Simko, I.1
Pechenick, D.A.2
McHale, L.K.3
Truco, L.J.4
Ochoa, O.E.5
Michelmore, R.W.6
Scheffler, B.E.7
-
139
-
-
0026496227
-
Using m,02arkers in gene introgression breeding programs
-
Hospital, F.; Chevalet, C.; Mulsant, P. Using m,02arkers in gene introgression breeding programs. Genetics, 1992, 132, 1199-1210.
-
(1992)
Genetics
, vol.132
, pp. 1199-1210
-
-
Hospital, F.1
Chevalet, C.2
Mulsant, P.3
-
140
-
-
40849118340
-
Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistant recombinants in Basmati rice
-
Gopalakrishnan, S.; Sharma, R.K.; Anand Rajkumar, K.A.; Joseph, M.; Singh, V.P.; Bhat, K.V.; Singh, N.K.; Mohapatra, T. Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistant recombinants in Basmati rice. Plant Breed., 2008, 127 131-139.
-
(2008)
Plant Breed.
, vol.127
, pp. 131-139
-
-
Gopalakrishnan, S.1
Sharma, R.K.2
Anand Rajkumar, K.A.3
Joseph, M.4
Singh, V.P.5
Bhat, K.V.6
Singh, N.K.7
Mohapatra, T.8
-
141
-
-
77951566675
-
Analysis of QTLs for erucic acid and oil content in seeds on A8 chromosome and the linkage drag between the alleles for the two traits in Brassica napus
-
Cao, Z.; Tian, F.; Wang, N.; Jiang, C.; Lin, B.; Xia, W.; Shi, J.; Long, Y.; Zhang, C.; Meng, J. Analysis of QTLs for erucic acid and oil content in seeds on A8 chromosome and the linkage drag between the alleles for the two traits in Brassica napus. J. Genet. Genomics, 2010, 37, 231-240.
-
(2010)
J. Genet. Genomics
, vol.37
, pp. 231-240
-
-
Cao, Z.1
Tian, F.2
Wang, N.3
Jiang, C.4
Lin, B.5
Xia, W.6
Shi, J.7
Long, Y.8
Zhang, C.9
Meng, J.10
-
142
-
-
0030866580
-
Pyramiding of bacterial blight resistance genes in rice: Markerassisted selection using RFLP and PCR
-
Huang, N.; Angeles, E.R.; Domingo, J.; Magpantay, G.; Singh, S.; Zhang, G.; Kumaravadivel, N.; Bennett, J.; Khush, G.S. Pyramiding of bacterial blight resistance genes in rice: markerassisted selection using RFLP and PCR. Theor. Appl. Genet., 1997, 95, 313-320.
-
(1997)
Theor. Appl. Genet.
, vol.95
, pp. 313-320
-
-
Huang, N.1
Angeles, E.R.2
Domingo, J.3
Magpantay, G.4
Singh, S.5
Zhang, G.6
Kumaravadivel, N.7
Bennett, J.8
Khush, G.S.9
-
143
-
-
35348819956
-
Optimization of the marker-based procedures for pyramiding genes from multiple donor lines: II. strategies for selecting the objective homozygous plant
-
Ishii, T.; Yonezawa, K. Optimization of the marker-based procedures for pyramiding genes from multiple donor lines: II. strategies for selecting the objective homozygous plant. Crop Sci., 2007, 47, 1878-1886.
-
(2007)
Crop Sci.
, vol.47
, pp. 1878-1886
-
-
Ishii, T.1
Yonezawa, K.2
-
144
-
-
77649339749
-
Breeding strategies for optimum heading date using genotypic information in rice
-
Wei, X.; Liu, L.; Xu, J.; Jiang, L.; Zhang, W.; Wang, J.; Zhai, H.; Wan, J. Breeding strategies for optimum heading date using genotypic information in rice. Mol. Breed., 2010, 25, 287-298.
-
(2010)
Mol. Breed.
, vol.25
, pp. 287-298
-
-
Wei, X.1
Liu, L.2
Xu, J.3
Jiang, L.4
Zhang, W.5
Wang, J.6
Zhai, H.7
Wan, J.8
-
145
-
-
79952670574
-
Epistatic association mapping in homozygous crop cultivars
-
Lü, H.Y.; Liu, X.F.; Wei, S.P.; Zhang, Y.M. Epistatic association mapping in homozygous crop cultivars. PLoS One, 2011, 6(3), e17773.
-
(2011)
PLoS One
, vol.6
, Issue.3
-
-
Lü, H.Y.1
Liu, X.F.2
Wei, S.P.3
Zhang, Y.M.4
-
146
-
-
77951987956
-
Genomic selection in plant breeding: From theory to practice
-
Jannink, J.L.; Lorenz, A.J. Iwata, H. Genomic selection in plant breeding: from theory to practice. Brief. Funct. Genomics, 2010, 9, 166-177.
-
(2010)
Brief. Funct. Genomics
, vol.9
, pp. 166-177
-
-
Jannink, J.L.1
Lorenz, A.J.2
Iwata, H.3
-
147
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen, T.H.E.; Hayes, B.J.; Goddard, M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics, 2001, 157, 1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
148
-
-
59249106951
-
Genomic selection for crop improvement
-
Heffner, E.L.; Sorrells, M.E.; Jannink, J.L. Genomic selection for crop improvement. Crop Sci., 2009, 49, 1-12.
-
(2009)
Crop Sci.
, vol.49
, pp. 1-12
-
-
Heffner, E.L.1
Sorrells, M.E.2
Jannink, J.L.3
-
149
-
-
63149172767
-
Genomewide selection for rapid introgression of exotic germplasm in maize
-
Bernardo, R. Genomewide selection for rapid introgression of exotic germplasm in maize. Crop Sci., 2009, 49, 419-425.
-
(2009)
Crop Sci.
, vol.49
, pp. 419-425
-
-
Bernardo, R.1
-
150
-
-
34548176501
-
Prospects for genomewide selection for quantitative traits in maize
-
Bernardo, R.; Yu, J. Prospects for genomewide selection for quantitative traits in maize. Crop Sci., 2007, 47, 1082-1090.
-
(2007)
Crop Sci.
, vol.47
, pp. 1082-1090
-
-
Bernardo, R.1
Yu, J.2
-
151
-
-
70949108214
-
Accuracy of genotypic value predictions for marker-based selection in biparental plant populations
-
Lorenzana, R.E.; Bernardo, R. Accuracy of genotypic value predictions for marker-based selection in biparental plant populations. Theor. Appl. Genet., 2009, 120, 151-161.
-
(2009)
Theor. Appl. Genet.
, vol.120
, pp. 151-161
-
-
Lorenzana, R.E.1
Bernardo, R.2
-
152
-
-
54949113665
-
Molecular markers and selection for complex traits in plants: Learning from the last 20 years
-
Bernardo, R. Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci., 2008, 48, 1649-1664.
-
(2008)
Crop Sci.
, vol.48
, pp. 1649-1664
-
-
Bernardo, R.1
-
153
-
-
56849108613
-
Breeding for yield potential and stress adaptation in cereals
-
Araus, J.L.; Slafer, G.A.; Royo, C.; Serret, M.D. Breeding for yield potential and stress adaptation in cereals. Crit. Rev. Plant Sci., 2008, 27, 377-412.
-
(2008)
Crit. Rev. Plant Sci.
, vol.27
, pp. 377-412
-
-
Araus, J.L.1
Slafer, G.A.2
Royo, C.3
Serret, M.D.4
|