A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.)

Plant Journal

Volumn 40, Issue 1, 2004, Pages 143-150

  Caldwell, David G ^a   McCallum, Nicola ^a   Shaw, Paul ^a   Muehlbauer, Gary J ^b   Marshall, David F ^a   Waugh, Robbie ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Barley; Cel I; Ethylmethanesulfonate; Mutagenesis; Reverse genetics

Indexed keywords

CROPS; DATABASE SYSTEMS; DNA; DYES; ENZYMES; HARVESTING; PLANTS (BOTANY); SCREENING;

DYE LABELING; MUTANTS; REVERSE GENETICS; SEQUENCE ANALYSIS;

GENETIC ENGINEERING;

MESYLIC ACID ETHYL ESTER; MUTAGENIC AGENT;

ARTICLE; BARLEY; BASE MISPAIRING; DRUG EFFECT; GENETIC PROCEDURES; GENETICS; GROWTH, DEVELOPMENT AND AGING; METHODOLOGY; MUTAGENESIS; PHENOTYPE; POLYMERASE CHAIN REACTION;

BASE PAIR MISMATCH; ETHYL METHANESULFONATE; GENETIC TECHNIQUES; HORDEUM; MUTAGENESIS; MUTAGENS; PHENOTYPE; POLYMERASE CHAIN REACTION;

BARLEY; DYES; ENZYMES; GENETIC ENGINEERING; HARVESTING; NUCLEIC ACIDS; PLANTS; SCREENING;

EMBRYOPHYTA; HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 5144232519     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2004.02190.x     Document Type: Article

References (37)

1. Anonymous (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
2. Aukerman, M.J. and Sakai, H. (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell, 15, 2730-2741.
3. Bahrami, A.R., Dickman, M.J., Matin, M.M. et al. (2002) Use of fluorescent DNA-intercalating dyes in the analysis of DNA via ion-pair reversed-phase denaturing high-performance liquid chromatography. Anal. Biochem. 309, 248-252.
4. Brown, J.W.S. (1996) Arabidopsis intron mutations and pre-mRNA splicing. Plant J. 10, 771-780
5. Cartegni, L., Chew, S.L and Krainer, A.R. (2002) Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat. Rev. Genet. 3, 285-298.
6. Close, T.A., Wanamaker, S., Caldo, R.A., Turner, S.M., Ashlock, D.A., Dickerson, J.A., Wing, R.A., Muehlbauer, G.J., Kleinhofs, A. and Wise, R.P. (2004) Global expression profiling in cereals: 22K barley GeneChip comes of age. Plant Physiol. 134, 960-968.
7. Colbert, T., Till, B.J., Tompa, R., Reynolds, S., Steine, M.N., Yeung, A.T., McCallum, C.M., Comai, L. and Henikoff, S. (2001) High-throughput screening for induced point mutations. Plant Physiol. 126, 480-484.
8. Feldmann, K.A., Marks, M.D., Christianson, M.L. and Quatrano, R.S. (1989) A dwarf mutant of Arabidopsis generated by T-DNA insertion mutagenesis. Science, 243, 1351-1354.
9. Franckowiak, J. (1997) Revised linkage maps for morphological markers in barley, Hordeum vulgare. Barley Genet. Newslett. 26, 9-21.
10. Gautier, M.F., Cosson, P., Guirao, A., Alary, R. and Joudrier, P. (2000) Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species. Plant Sci. 153, 81-91.
11. Greene, E.A., Codomo, C.A., Taylor, N.E. et al. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731-740.
12. Gu, Z.L., Steinmetz, L.M., Gu, X., Scharfe, C., Davis, R.W., Li, W.H. (2003) Role of duplicate genes in genetic robustness against null mutations. Nature, 421, 63-66.
13. Henikoff, S. and Comai, L. (2003) Single-nucleotide mutations for plant functional genomics. Annu. Rev. Plant Biol. 54, 375-401.
14. Hirochika, H. (2001) Contribution of the Tos17 retrotransposon to rice functional genomics. Curr. Opin. Plant Biol. 4, 118-122.
15. Jeon, J.S., Lee, S., Jung, K.H. et al. (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J. 22, 561-570.
16. Kleinhofs, A. and Graner, A. (2001) An integrated map of the barley genome. In DNA-Based Markers in Plants (Phillips, R.L. and Vasil, I.K., eds). Dordrecht: Kluwer Academic Publishers, pp. 187-199.
17. Kleinhofs, A. and Han, F. (2001) Molecular mapping of the barley genome. In Barley Science. Recent Advances from Molecular Biology to Agronomy of Yield and Quality (Slafer, J.L.M.-C.G.A., Araus, J.L., Savin, R. and Romagosa, I., eds). New York: Food Product Press, pp. 31-45.
18. Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J. (2001) The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. Dev. Biol. 231, 364-373.
19. Koornneef, M., Dellaert, L.W.M. and Vanderveen, J.H. (1982) EMS-induced and radiation-induced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh. Mutat. Res. 93, 109-123.
20. Koprek, T., McElroy, D., Louwerse, J., Williams-Carrier, R. and Lemaux, P.G. (2000) An efficient method for dispersing Ds elements in the barley genome as a tool for determining gene function. Plant J. 24, 253-263.
21. Koprek, T., Rangel, S., McElroy, D., Louwerse, J.D., Williams-Carrier, R.E. and Lemaux, P.G. (2001) Transposon-mediated single-copy gene delivery leads to increased transgene expression stability in barley. Plant Physiol. 125, 1354-1362.
22. Kulinski, J., Besack, D., Oleykowski, C.A., Godwin, A.K. and Yeung, A.T. (2000) CEL I enzymatic mutation detection assay. Biotechniques, 29, 44-46.
23. Li, X., Song, Y.J., Century, K., Straight, S., Ronald, P., Dong, X.N., Lassner, M. and Zhang, Y.L. (2001) A fast neutron deletion mutagenesis-based reverse genetics system for plants. Plant J. 27, 235-242.
24. Li, X., Lassner, M. and Zhang, Y.L. (2002) Deleteagene: a fast neutron deletion mutagenesis-based gene knockout system for plants. Comp. Funct. Genom. 3, 158-160.
25. Marsch-Martinez, N., Greco, R., Van Arkel, G., Herrera-Estrella, L. and Pereira, A. (2002) Activation tagging using the En-I maize transposon system in Arabidopsis. Plant Physiol. 129, 1544-1556.
26. McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000a) Targeted screening for induced mutations. Nat. Biotechnol. 18, 455-457.
27. McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000b) Targeting induced local lesions in genomes (TILLING) for plant functional genomics. Plant Physiol. 123, 439-442.
28. Nakagawa, Y., Machida, C., Machida, Y. and Toriyama, K. (2000) Frequency and pattern of transposition of the maize transposable element Ds in transgenic rice plants. Plant Cell Physiol. 41, 733-742.
29. Oleykowski, C.A., Mullins, C.R.B., Godwin, A.K. and Yeung, A.T. (1998) Mutation detection using a novel plant endonuclease. Nucl. Acids Res. 26, 4597-4602.
30. Palatnik, J.F., Allen, E., Wu, X.L., Schommer, C., Schwab, R., Carrington, J.C. and Weigel, D. (2003) Control of leaf morphogenesis by microRNAs. Nature, 425, 257-263.
31. Perry, J.A., Wang, T.L, Welham, T.J., Gardner, S., Pike, J.M., Yoshida, S. and Parniske, M. (2003) A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol. 131, 866-871.
32. Qiu, P., Shandilya, H., D'Alessio, J.M., O'Connor, K., Durocher, J. and Gerard, G.F. (2004) Mutation detection using Surveyor nuclease. Biotechniques, 36, 702-707.
33. Ramsay, L., Macaulay, M., Ivanissevich, S.D. et al. (2000) A simple sequence repeat-based linkage map of barley. Genetics, 156, 1997-2005.
34. Weigel, D., Ahn, J.H., Blazquez, M.A. et al. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 1003-1013.
35. Yan, L., Loukoianov, A., Tranquilli, G., Helguera, M., Fahima, T. and Dubcovsky, J. (2003) Positional cloning of the wheat vernalization gene VRN1. Proc. Natl Acad. Sci. USA, 100, 6263-6268.
36. Van, L., Loukoianov, A., Tranquilli, G., Blechl, A., Ramakrishna, W., SanMiguel, P., Bennetzen, J.L., Echenique, V. and Dubcovsky, J. (2004) The wheat VRN2 gene is a flowering repressor downregulated by vernalization. Science, 303, 1640-1644.
37. Yu, Y., Tomkins, J.P., Waugh, R., Frisch, D.A., Kudrna, D., Kleinhofs, A., Brueggeman, R.S., Muehlbauer, G.J., Wise, R.P. and Wing, R.A. (2000) A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theor. Appl. Genet. 101, 1093-1099.