메뉴 건너뛰기




Volumn 51, Issue 6, 2007, Pages 1116-1125

Characterization of Arabidopsis thaliana mismatch specific endonucleases: Application to mutation discovery by TILLING in pea

Author keywords

Endonuclease; Heteroduplex DNA; Mutation; TILLING

Indexed keywords

DNA SEQUENCES; GENE EXPRESSION; MUTAGENESIS; PLANTS (BOTANY); POLYMORPHISM;

EID: 34548482029     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2007.03201.x     Document Type: Article
Times cited : (122)

References (59)
  • 1
    • 0016757709 scopus 로고
    • Nuclease that preferentially inactivates DNA containing mismatched bases
    • Ahmad, A., Holloman, W.K. Holliday, R. (1975) Nuclease that preferentially inactivates DNA containing mismatched bases. Nature, 258, 54 56.
    • (1975) Nature , vol.258 , pp. 54-56
    • Ahmad, A.1    Holloman, W.K.2    Holliday, R.3
  • 3
    • 0016213896 scopus 로고
    • Detection of sequence heterology by use of the N. crassa nucleases
    • Bartok, K., Fraser, M.J. Fareed, G.C. (1974) Detection of sequence heterology by use of the N. crassa nucleases. Biochem. Biophys. Res. Commun. 60, 507 514.
    • (1974) Biochem. Biophys. Res. Commun. , vol.60 , pp. 507-514
    • Bartok, K.1    Fraser, M.J.2    Fareed, G.C.3
  • 5
    • 0027435506 scopus 로고
    • In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants
    • Bechtold, N., Ellis, J. Pelletier, G. (1993) In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. Mol. Biol. Genet. 316, 1194 1199.
    • (1993) Mol. Biol. Genet. , vol.316 , pp. 1194-1199
    • Bechtold, N.1    Ellis, J.2    Pelletier, G.3
  • 6
    • 0034000967 scopus 로고    scopus 로고
    • Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: Application to the Rx2 locus in potato
    • Bendahmane, A., Querci, M., Kanyuka, K. Baulcombe, D.C. (2000) Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato. Plant J. 21, 73 81.
    • (2000) Plant J. , vol.21 , pp. 73-81
    • Bendahmane, A.1    Querci, M.2    Kanyuka, K.3    Baulcombe, D.C.4
  • 7
    • 0036775380 scopus 로고    scopus 로고
    • Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato
    • Bendahmane, A., Farnham, G., Moffett, P. Baulcombe, D.C. (2002) Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato. Plant J. 32, 195 204.
    • (2002) Plant J. , vol.32 , pp. 195-204
    • Bendahmane, A.1    Farnham, G.2    Moffett, P.3    Baulcombe, D.C.4
  • 8
    • 0033760528 scopus 로고    scopus 로고
    • Targeted recovery of mutations in Drosophila
    • Bentley, A., MacLennan, B., Calvo, J. Dearolf, C.R. (2000) Targeted recovery of mutations in Drosophila. Genetics, 156, 1169 1173.
    • (2000) Genetics , vol.156 , pp. 1169-1173
    • Bentley, A.1    MacLennan, B.2    Calvo, J.3    Dearolf, C.R.4
  • 9
    • 0027377952 scopus 로고
    • A binary vector based on Basta resistance for in planta transformation of Arabidopsis thaliana
    • Bouchez, D., Camillieu, C. Caboche, M. (1993) A binary vector based on Basta resistance for in planta transformation of Arabidopsis thaliana. C. R. Acad. Sci. 316, 1188 1193.
    • (1993) C. R. Acad. Sci. , vol.316 , pp. 1188-1193
    • Bouchez, D.1    Camillieu, C.2    Caboche, M.3
  • 10
    • 0036702779 scopus 로고    scopus 로고
    • Site-selective reactions of imperfectly matched DNA with small chemical molecules: Applications in mutation detection
    • Bui, C.T., Rees, K., Lambrinakos, A., Bedir, A. Cotton, R.G. (2002) Site-selective reactions of imperfectly matched DNA with small chemical molecules: applications in mutation detection. Bioorg. Chem. 30, 216 232.
    • (2002) Bioorg. Chem. , vol.30 , pp. 216-232
    • Bui, C.T.1    Rees, K.2    Lambrinakos, A.3    Bedir, A.4    Cotton, R.G.5
  • 11
    • 17444446261 scopus 로고    scopus 로고
    • Improved full-length cDNA production based on RNA tagging by T4 DNA ligase
    • Clepet, C., Le Clainche, I. Caboche, M. (2004) Improved full-length cDNA production based on RNA tagging by T4 DNA ligase. Nucleic Acids Res. 32, e6.
    • (2004) Nucleic Acids Res. , vol.32
    • Clepet, C.1    Le Clainche, I.2    Caboche, M.3
  • 14
    • 10744223304 scopus 로고    scopus 로고
    • Efficient discovery of DNA polymorphisms in natural populations by Ecotilling
    • Comai, L., Young, K., Till, B.J. et al. (2004) Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant J. 37, 778 786.
    • (2004) Plant J. , vol.37 , pp. 778-786
    • Comai, L.1    Young, K.2    Till, B.J.3
  • 15
    • 0032518266 scopus 로고    scopus 로고
    • DNA shuffling of a family of genes from diverse species accelerates directed evolution
    • Crameri, A., Raillard, S.A., Bermudez, E. Stemmer, W.P. (1998) DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature, 391, 288 291.
    • (1998) Nature , vol.391 , pp. 288-291
    • Crameri, A.1    Raillard, S.A.2    Bermudez, E.3    Stemmer, W.P.4
  • 16
    • 0017393537 scopus 로고
    • Action of single-strand specific nucleases on model DNA heteroduplexes of defined size and sequence
    • Dodgson, J.B. Wells, R.D. (1977) Action of single-strand specific nucleases on model DNA heteroduplexes of defined size and sequence. Biochemistry, 16, 2374 2379.
    • (1977) Biochemistry , vol.16 , pp. 2374-2379
    • Dodgson, J.B.1    Wells, R.D.2
  • 17
    • 0032488227 scopus 로고    scopus 로고
    • Isolation and stability of histidine-tagged proteins produced in plants via potyvirus gene vectors
    • Dolja, V.V., Peremyslov, V.V., Keller, K.E., Martin, R.R. Hong, J. (1998) Isolation and stability of histidine-tagged proteins produced in plants via potyvirus gene vectors. Virology, 252, 269 274.
    • (1998) Virology , vol.252 , pp. 269-274
    • Dolja, V.V.1    Peremyslov, V.V.2    Keller, K.E.3    Martin, R.R.4    Hong, J.5
  • 18
    • 22144451216 scopus 로고    scopus 로고
    • The branching gene RAMOSUS1 mediates interactions among two novel signals and auxin in pea
    • Foo, E., Bullier, E., Goussot, M., Foucher, F., Rameau, C. Beveridge, C.A. (2005) The branching gene RAMOSUS1 mediates interactions among two novel signals and auxin in pea. Plant Cell, 17, 464 474.
    • (2005) Plant Cell , vol.17 , pp. 464-474
    • Foo, E.1    Bullier, E.2    Goussot, M.3    Foucher, F.4    Rameau, C.5    Beveridge, C.A.6
  • 19
    • 0027433113 scopus 로고
    • Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: Evidence for solvent-induced bends in DNA heteroduplexes
    • Ganguly, A., Rock, M.J. Prockop, D.J. (1993) Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: evidence for solvent-induced bends in DNA heteroduplexes. Proc. Natl Acad. Sci. USA, 90, 10325 10329.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 10325-10329
    • Ganguly, A.1    Rock, M.J.2    Prockop, D.J.3
  • 20
    • 0026492496 scopus 로고
    • Characterization of S1 nuclease. Involvement of carboxylate groups in metal binding
    • Gite, S. Shankar, V. (1992) Characterization of S1 nuclease. Involvement of carboxylate groups in metal binding. Eur. J. Biochem. 210, 437 441.
    • (1992) Eur. J. Biochem. , vol.210 , pp. 437-441
    • Gite, S.1    Shankar, V.2
  • 21
    • 0026489354 scopus 로고
    • Active-site characterization of S1 nuclease. II. Involvement of histidine in catalysis
    • Gite, S., Reddy, G. Shankar, V. (1992) Active-site characterization of S1 nuclease. II. Involvement of histidine in catalysis. Biochem. J. 288, 571 575.
    • (1992) Biochem. J. , vol.288 , pp. 571-575
    • Gite, S.1    Reddy, G.2    Shankar, V.3
  • 22
    • 10744225138 scopus 로고    scopus 로고
    • Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis
    • Greene, E.A., Codomo, C.A., Taylor, N.E. et al. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731 740.
    • (2003) Genetics , vol.164 , pp. 731-740
    • Greene, E.A.1    Codomo, C.A.2    Taylor, N.E.3
  • 23
    • 0038676993 scopus 로고    scopus 로고
    • Insertional mutants: A foundation for assessing gene function
    • Hirschi, K.D. (2003) Insertional mutants: a foundation for assessing gene function. Trends Plant Sci. 8, 205 207.
    • (2003) Trends Plant Sci. , vol.8 , pp. 205-207
    • Hirschi, K.D.1
  • 24
    • 0033018097 scopus 로고    scopus 로고
    • Heteroduplex cleavage analysis using S1 nuclease
    • Howard, J.T., Ward, J., Watson, J.N. Roux, K.H. (1999) Heteroduplex cleavage analysis using S1 nuclease. Biotechniques, 27, 18 19.
    • (1999) Biotechniques , vol.27 , pp. 18-19
    • Howard, J.T.1    Ward, J.2    Watson, J.N.3    Roux, K.H.4
  • 28
    • 0031200961 scopus 로고    scopus 로고
    • Mendel's stem length gene (Le) encodes a gibberellin 3 beta-hydroxylase
    • Lester, D.R., Ross, J.J., Davies, P.J. Reid, J.B. (1997) Mendel's stem length gene (Le) encodes a gibberellin 3 beta-hydroxylase. Plant Cell, 9, 1435 1443.
    • (1997) Plant Cell , vol.9 , pp. 1435-1443
    • Lester, D.R.1    Ross, J.J.2    Davies, P.J.3    Reid, J.B.4
  • 29
    • 0025743483 scopus 로고
    • Primary structure of nuclease P1 from Penicillium citrinum
    • Maekawa, K., Tsunasawa, S., Dibo, G. Sakiyama, F. (1991) Primary structure of nuclease P1 from Penicillium citrinum. Eur. J. Biochem. 200, 651 661.
    • (1991) Eur. J. Biochem. , vol.200 , pp. 651-661
    • Maekawa, K.1    Tsunasawa, S.2    Dibo, G.3    Sakiyama, F.4
  • 30
    • 0028076771 scopus 로고
    • Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as ''spacers'' which do not require a specific sequence
    • Markiewicz, P., Kleina, L.G., Cruz, C., Ehret, S. Miller, J.H. (1994) Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as ''spacers'' which do not require a specific sequence. J. Mol. Biol. 240, 421 433.
    • (1994) J. Mol. Biol. , vol.240 , pp. 421-433
    • Markiewicz, P.1    Kleina, L.G.2    Cruz, C.3    Ehret, S.4    Miller, J.H.5
  • 31
    • 0030739498 scopus 로고    scopus 로고
    • Mendel's dwarfing gene: CDNAs from the Le alleles and function of the expressed proteins
    • Martin, D.N., Proebsting, W.M. Hedden, P. (1997) Mendel's dwarfing gene: cDNAs from the Le alleles and function of the expressed proteins. Proc. Natl Acad. Sci. USA, 94, 8907 8911.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 8907-8911
    • Martin, D.N.1    Proebsting, W.M.2    Hedden, P.3
  • 33
    • 0034095825 scopus 로고    scopus 로고
    • Targeting induced local lesions in genomes (TILLING) for plant functional genomics
    • McCallum, C.M., Comai, L., Greene, E.A. Henikoff, S. (2000b) Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol. 123, 439 442.
    • (2000) Plant Physiol. , vol.123 , pp. 439-442
    • McCallum, C.M.1    Comai, L.2    Greene, E.A.3    Henikoff, S.4
  • 34
    • 0033049593 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection
    • Nataraj, A.J., Olivos-Glander, I., Kusukawa, N. Highsmith Jr., W.E. (1999) Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis, 20, 1177 1185.
    • (1999) Electrophoresis , vol.20 , pp. 1177-1185
    • Nataraj, A.J.1    Olivos-Glander, I.2    Kusukawa, N.3    Highsmith Jr., W.E.4
  • 35
    • 0000520709 scopus 로고
    • Comparative DNA sequencing by denaturing high-performance liquid chromatography (DHPLC)
    • Oefner, P.J. Underhill, P.A. (1995) Comparative DNA sequencing by denaturing high-performance liquid chromatography (DHPLC). Am. J. Hum. Genet. 57, 266 273.
    • (1995) Am. J. Hum. Genet. , vol.57 , pp. 266-273
    • Oefner, P.J.1    Underhill, P.A.2
  • 37
    • 0033573829 scopus 로고    scopus 로고
    • Incision at nucleotide insertions/deletions and base pair mismatches by the SP nuclease of spinach
    • Oleykowski, C.A., Bronson Mullins, C.R., Chang, D.W. Yeung, A.T. (1999) Incision at nucleotide insertions/deletions and base pair mismatches by the SP nuclease of spinach. Biochemistry, 38, 2200 2205.
    • (1999) Biochemistry , vol.38 , pp. 2200-2205
    • Oleykowski, C.A.1    Bronson Mullins, C.R.2    Chang, D.W.3    Yeung, A.T.4
  • 38
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K. Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl Acad. Sci. USA, 86, 2766 2770.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 39
    • 0035143177 scopus 로고    scopus 로고
    • REVOLUTA regulates meristem initiation at lateral positions
    • Otsuga, D., DeGuzman, B., Prigge, M.J., Drews, G.N. Clark, S.E. (2001) REVOLUTA regulates meristem initiation at lateral positions. Plant J. 25, 223 236.
    • (2001) Plant J. , vol.25 , pp. 223-236
    • Otsuga, D.1    Deguzman, B.2    Prigge, M.J.3    Drews, G.N.4    Clark, S.E.5
  • 41
    • 0347091252 scopus 로고    scopus 로고
    • A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus
    • Perry, J.A., Wang, T.L., Welham, T.J., Gardner, S., Pike, J.M., Yoshida, S. Parniske, M. (2003) A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol. 131, 866 871.
    • (2003) Plant Physiol. , vol.131 , pp. 866-871
    • Perry, J.A.1    Wang, T.L.2    Welham, T.J.3    Gardner, S.4    Pike, J.M.5    Yoshida, S.6    Parniske, M.7
  • 42
    • 0017816798 scopus 로고
    • The recognition of mismatched base pairs in DNA by DNase I from Ustilago maydis
    • Pukkila, P.J. (1978) The recognition of mismatched base pairs in DNA by DNase I from Ustilago maydis. Mol. Gen. Genet. 161, 245 250.
    • (1978) Mol. Gen. Genet. , vol.161 , pp. 245-250
    • Pukkila, P.J.1
  • 43
    • 0002588419 scopus 로고    scopus 로고
    • New ramosus mutants at loci Rms1, Rms3 and Rms4 resulting from the mutation breeding program at Versailles
    • Rameau, C., Bodelin, C., Cadier, D., Grandjean, O., Miard, F. Murfey, I.C. (1997) New ramosus mutants at loci Rms1, Rms3 and Rms4 resulting from the mutation breeding program at Versailles. Pisum Genet., 29, 7 12.
    • (1997) Pisum Genet. , vol.29 , pp. 7-12
    • Rameau, C.1    Bodelin, C.2    Cadier, D.3    Grandjean, O.4    Miard, F.5    Murfey, I.C.6
  • 44
    • 0034672635 scopus 로고    scopus 로고
    • Rapid detection of DNA sequence variants by conformation-sensitive capillary electrophoresis
    • Rozycka, M., Collins, N., Stratton, M.R. Wooster, R. (2000) Rapid detection of DNA sequence variants by conformation-sensitive capillary electrophoresis. Genomics, 70, 34 40.
    • (2000) Genomics , vol.70 , pp. 34-40
    • Rozycka, M.1    Collins, N.2    Stratton, M.R.3    Wooster, R.4
  • 45
    • 1642591341 scopus 로고
    • Biochemical method for mapping mutational alterations in DNA with S1 nuclease: The location of deletions and temperature-sensitive mutations in simian virus 40
    • Shenk, T.E., Rhodes, C., Rigby, P.W. Berg, P. (1975) Biochemical method for mapping mutational alterations in DNA with S1 nuclease: the location of deletions and temperature-sensitive mutations in simian virus 40. Proc. Natl Acad. Sci. USA, 72, 989 993.
    • (1975) Proc. Natl Acad. Sci. USA , vol.72 , pp. 989-993
    • Shenk, T.E.1    Rhodes, C.2    Rigby, P.W.3    Berg, P.4
  • 46
    • 0019731675 scopus 로고
    • S1 nuclease does not cleave DNA at single-base mismatches
    • Silber, J.R. Loeb, L.A. (1981) S1 nuclease does not cleave DNA at single-base mismatches. Biochim. Biophys. Acta, 656, 256 264.
    • (1981) Biochim. Biophys. Acta , vol.656 , pp. 256-264
    • Silber, J.R.1    Loeb, L.A.2
  • 48
    • 0028050350 scopus 로고
    • Rapid evolution of a protein in vitro by DNA shuffling
    • Stemmer, W.P. (1994) Rapid evolution of a protein in vitro by DNA shuffling. Nature, 370, 389 391.
    • (1994) Nature , vol.370 , pp. 389-391
    • Stemmer, W.P.1
  • 49
    • 0036336159 scopus 로고    scopus 로고
    • MAX1 and MAX2 control shoot branching in Arabidopsis
    • Stirnberg, P., von de Sande, K. Leyser, H.M.O. (2002) MAX1 and MAX2 control shoot branching in Arabidopsis. Development, 129, 1131 1141.
    • (2002) Development , vol.129 , pp. 1131-1141
    • Stirnberg, P.1    Von De Sande, K.2    Leyser, H.M.O.3
  • 50
    • 0001161168 scopus 로고
    • A nuclease from mung bean sprouts
    • Sung, S.C. Laskowski, M., Sr. (1962) A nuclease from mung bean sprouts. J. Biol. Chem. 237, 506 511.
    • (1962) J. Biol. Chem. , vol.237 , pp. 506-511
    • Sung, S.C.1    Laskowski, M.Sr.2
  • 51
    • 0032970025 scopus 로고    scopus 로고
    • Enzymatic methods for mutation scanning
    • Taylor, G.R. Deeble, J. (1999) Enzymatic methods for mutation scanning. Genet. Anal. 14, 181 186.
    • (1999) Genet. Anal. , vol.14 , pp. 181-186
    • Taylor, G.R.1    Deeble, J.2
  • 52
    • 3042525130 scopus 로고    scopus 로고
    • Mismatch cleavage by single-strand specific nucleases
    • Till, B.J., Burtner, C., Comai, L. Henikoff, S. (2004a) Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res. 32, 2632 2641.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 2632-2641
    • Till, B.J.1    Burtner, C.2    Comai, L.3    Henikoff, S.4
  • 53
    • 13444271629 scopus 로고    scopus 로고
    • Discovery of induced point mutations in maize genes by TILLING
    • Till, B.J., Reynolds, S.H., Weil, C. et al. (2004b) Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biol. 4, 12.
    • (2004) BMC Plant Biol. , vol.4 , pp. 12
    • Till, B.J.1    Reynolds, S.H.2    Weil, C.3
  • 55
    • 0025763145 scopus 로고
    • Crystal structure of Penicillium citrinum P1 nuclease at 2.8 a resolution
    • Volbeda, A., Lahm, A., Sakiyama, F. Suck, D. (1991) Crystal structure of Penicillium citrinum P1 nuclease at 2.8 A resolution. EMBO J. 10, 1607 1618.
    • (1991) EMBO J. , vol.10 , pp. 1607-1618
    • Volbeda, A.1    Lahm, A.2    Sakiyama, F.3    Suck, D.4
  • 59
    • 13444264729 scopus 로고    scopus 로고
    • GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
    • Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L. Gruissem, W. (2004) GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox. Plant Physiol. 136, 2621 2632.
    • (2004) Plant Physiol. , vol.136 , pp. 2621-2632
    • Zimmermann, P.1    Hirsch-Hoffmann, M.2    Hennig, L.3    Gruissem, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.