메뉴 건너뛰기




Volumn 19, Issue 6, 2009, Pages 1068-1076

High-throughput genotyping by whole-genome resequencing

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; COMPUTER SIMULATION; GENE MAPPING; GENE SEQUENCE; GENE TECHNOLOGY; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENOME; GENOME SIZE; HIGH THROUGHPUT GENOTYPING; NONHUMAN; PLANT HEIGHT; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RICE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 66449120272     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.089516.108     Document Type: Article
Times cited : (739)

References (19)
  • 2
    • 56149096455 scopus 로고    scopus 로고
    • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    • doi: 10.1093/nar/gkn502
    • Cronn, R., Liston, A., Parks, M., Gernandt, D.S., Shen, R., and Mockler, T. 2008. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. 36: e122. doi: 10.1093/nar/gkn502.
    • (2008) Nucleic Acids Res. , vol.36
    • Cronn, R.1    Liston, A.2    Parks, M.3    Gernandt, D.S.4    Shen, R.5    Mockler, T.6
  • 3
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • doi: 10.1093/nar/gkn425
    • Dohm, J.C., Lottaz, C., Borodina, T., and Himmelbauer, H. 2008. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 36: e105. doi: 10.1093/nar/gkn425.
    • (2008) Nucleic Acids Res. , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 5
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • DOI 10.1038/nature03895
    • International Rice Genome Sequencing Project. 2005. The map-based sequence of the rice genome. Nature 436: 793-800. (Pubitemid 41160631)
    • (2005) Nature , vol.436 , Issue.7052 , pp. 793-800
    • Sasaki, T.1
  • 6
    • 45749141263 scopus 로고    scopus 로고
    • Development and evaluation of a high-throughput, low-cost genotyping platformbased on oligonucleotide microarrays in rice
    • doi: 10.1186/1746-4811-4-13
    • Jeremy, E., Jaroslav, J., Megan, S., Ambika, G., Bin, L., Hei, L., and David, G. 2008. Development and evaluation of a high-throughput, low-cost genotyping platformbased on oligonucleotide microarrays in rice. Plant Methods 4: 13. doi: 10.1186/1746-4811-4-13.
    • (2008) Plant Methods , vol.4 , pp. 13
    • Jeremy, E.1    Jaroslav, J.2    Megan, S.3    Ambika, G.4    Bin, L.5    Hei, L.6    David, G.7
  • 7
    • 4544329299 scopus 로고    scopus 로고
    • A preprocessor for shotgun assembly of large genomes
    • DOI 10.1089/cmb.2004.11.734
    • Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., and Salzberg, S.L. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5: R12. doi: 10.1186/gb-2004-5-2-r12. (Pubitemid 39238384)
    • (2004) Journal of Computational Biology , vol.11 , Issue.4 , pp. 734-752
    • Roberts, M.1    Hunt, B.R.2    Yorke, J.A.3    Bolanos, R.A.4    Delcher, A.L.5
  • 8
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H., Ruan, J., and Durbin, R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 10
    • 33644851549 scopus 로고    scopus 로고
    • Genotyping pooled DNA using 100K SNP microarrays: A step towards genomewide association scans
    • doi: 10.1093/nar/gnj027
    • Meaburn, E., Butcher, L.M., Schalkwyk, L.C., and Plomin, R. 2006. Genotyping pooled DNA using 100K SNP microarrays: A step towards genomewide association scans. Nucleic Acids Res. 34: e2. doi: 10.1093/nar/gnj027.
    • (2006) Nucleic Acids Res. , vol.34
    • Meaburn, E.1    Butcher, L.M.2    Schalkwyk, L.C.3    Plomin, R.4
  • 12
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • DOI 10.1101/gr.194201
    • Ning, Z., Cox, A.J., and Mullikin, J.C. 2001. SSAHA: A fast search method for large DNA databases. Genome Res. 11: 1725-1729. (Pubitemid 33040499)
    • (2001) Genome Research , vol.11 , Issue.10 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 13
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice, P., Longden, I., and Bleasby, A. 2000. EMBOSS: The European molecular biology open software suite. Trends Genet. 16: 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 15
    • 33749380600 scopus 로고    scopus 로고
    • A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization
    • DOI 10.1371/journal.pgen.0020144
    • Singer, T., Fan, Y., Chang, H.S., Zhu, T., Hazen, S.P., and Briggs, S.P. 2006. A high-resolution map of Arabidopsis recombinant inbred lines by wholegenome exon array hybridization. PLoS Genet. 2: e144. doi: 10.1371/journal.pgen.0020144. (Pubitemid 44504787)
    • (2006) PLoS Genetics , vol.2 , Issue.9 , pp. 1352-1361
    • Singer, T.1    Fan, Y.2    Chang, H.-S.3    Zhu, T.4    Hazen, S.P.5    Briggs, S.P.6
  • 17
    • 0007367001 scopus 로고    scopus 로고
    • Department of Statistics, North Carolina State University, Raleigh, NC
    • Wang, S., Basten, C.J., and Zeng, Z.B. 2007. Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC.
    • (2007) Windows QTL Cartographer 2.5
    • Wang, S.1    Basten, C.J.2    Zeng, Z.B.3
  • 19
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • doi: 10.1371/journal.pbio.0030038
    • Yu, J., Wang, J., Lin, W., Li, S.G., Li, H., Zhou, J., Ni, P.X., Dong, W., Hu, S.N., Zeng, C.Q., et al. 2005. The genomes of Oryza sativa: A history of duplications. PLoS Biol. 3: 266-281. doi: 10.1371/journal.pbio.0030038.
    • (2005) PLoS Biol. , vol.3 , pp. 266-281
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.G.4    Li, H.5    Zhou, J.6    Ni, P.X.7    Dong, W.8    Hu, S.N.9    Zeng, C.Q.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.