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Volumn 154, Issue 3, 2010, Pages 1053-1066

A high-throughput data mining of single nucleotide polymorphisms in coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid coffea arabica

Author keywords

[No Author keywords available]

Indexed keywords

COFFEA; COFFEA ARABICA; COFFEA CANEPHORA; COFFEA EUGENIOIDES; MAGNOLIOPHYTA;

EID: 78349278490     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.110.162438     Document Type: Article
Times cited : (61)

References (46)
  • 1
    • 34250674565 scopus 로고    scopus 로고
    • Evolution of duplicate gene expression in polyploid and hybrid plants
    • Adams KL (2007) Evolution of duplicate gene expression in polyploid and hybrid plants. J Hered 98: 136-141
    • (2007) J Hered , vol.98 , pp. 136-141
    • Adams, K.L.1
  • 2
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organspecific reciprocal silencing
    • Adams KL, Cronn R, Percifield R, Wendel JF (2003) Genes duplicated by polyploidy show unequal contributions to the transcriptome and organspecific reciprocal silencing. Proc Natl Acad Sci USA 100: 4649-4654
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 3
    • 14744277777 scopus 로고    scopus 로고
    • Polyploidy and genome evolution in plants
    • Adams KL, Wendel JF (2005) Polyploidy and genome evolution in plants. Curr Opin Plant Biol 8: 135-141
    • (2005) Curr Opin Plant Biol , vol.8 , pp. 135-141
    • Adams, K.L.1    Wendel, J.F.2
  • 4
    • 33845869870 scopus 로고    scopus 로고
    • Identification, characterization and utilization of ESTderived genic microsatellite markers for genome analyses of coffee and related species
    • Aggarwal RK, Hendre PS, Varshney RK, Bhat PR, Krishnakumar V, Singh L (2007) Identification, characterization and utilization of ESTderived genic microsatellite markers for genome analyses of coffee and related species. Theor Appl Genet 114: 359-372
    • (2007) Theor Appl Genet , vol.114 , pp. 359-372
    • Aggarwal, R.K.1    Hendre, P.S.2    Varshney, R.K.3    Bhat, P.R.4    Krishnakumar, V.5    Singh, L.6
  • 8
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 9
    • 4544328798 scopus 로고    scopus 로고
    • An improved method for high-quality RNA isolation from needles of adult maritime pine trees
    • Azevedo H, Lino-Neto T, Tavares RM (2003) An improved method for high-quality RNA isolation from needles of adult maritime pine trees. Plant Mol Biol Rep 21: 333-338
    • (2003) Plant Mol Biol Rep , vol.21 , pp. 333-338
    • Azevedo, H.1    Lino-Neto, T.2    Tavares, R.M.3
  • 12
    • 85045497108 scopus 로고
    • Mismatch amplification mutation assay (MAMA): Application to the c-H-ras gene
    • Cha RS, Zarbl H, Keohavong P, Thilly WG (1992) Mismatch amplification mutation assay (MAMA): application to the c-H-ras gene. PCR Methods Appl 2: 14-20
    • (1992) PCR Methods Appl , vol.2 , pp. 14-20
    • Cha, R.S.1    Zarbl, H.2    Keohavong, P.3    Thilly, W.G.4
  • 14
    • 43949138227 scopus 로고    scopus 로고
    • Blast2GO: A comprehensive suite for functional analysis in plant genomics
    • Conesa A, Götz S (2008) Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008: 619832
    • (2008) Int J Plant Genomics , vol.2008 , pp. 619832
    • Conesa, A.1    Götz, S.2
  • 18
    • 33845491291 scopus 로고    scopus 로고
    • Application of single nucleotide polymorphism in crop genetics and improvement
    • Du CF, Liu HM, Li RZ, Li PB, Ren ZQ (2003) [Application of single nucleotide polymorphism in crop genetics and improvement]. Yi Chuan 25: 735-739
    • (2003) Yi Chuan , vol.25 , pp. 735-739
    • du, C.F.1    Liu, H.M.2    Li, R.Z.3    Li, P.B.4    Ren, Z.Q.5
  • 20
    • 44349092466 scopus 로고    scopus 로고
    • Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies
    • Hendre PS, Phanindranath R, Annapurna V, Lalremruata A, Aggarwal RK (2008) Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies. BMC Plant Biol 8: 51
    • (2008) BMC Plant Biol , vol.8 , pp. 51
    • Hendre, P.S.1    Phanindranath, R.2    Annapurna, V.3    Lalremruata, A.4    Aggarwal, R.K.5
  • 21
    • 52049088237 scopus 로고    scopus 로고
    • Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton
    • Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF (2008a) Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics 179: 1725-1733
    • (2008) Genetics , vol.179 , pp. 1725-1733
    • Hovav, R.1    Chaudhary, B.2    Udall, J.A.3    Flagel, L.4    Wendel, J.F.5
  • 22
    • 43149114448 scopus 로고    scopus 로고
    • Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant
    • Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF (2008b) Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proc Natl Acad Sci USA 105: 6191-6195
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 6191-6195
    • Hovav, R.1    Udall, J.A.2    Chaudhary, B.3    Rapp, R.4    Flagel, L.5    Wendel, J.F.6
  • 23
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 25
    • 0033980126 scopus 로고    scopus 로고
    • Single-locus inheritance in the allotetraploid Coffea arabica L. and interspecific hybrid C. arabica × C. canephora
    • Lashermes P, Paczek V, Trouslot P, Combes MC, Couturon E, Charrier A (2000) Single-locus inheritance in the allotetraploid Coffea arabica L. and interspecific hybrid C. arabica × C. canephora. J Hered 91: 81-85
    • (2000) J Hered , vol.91 , pp. 81-85
    • Lashermes, P.1    Paczek, V.2    Trouslot, P.3    Combes, M.C.4    Couturon, E.5    Charrier, A.6
  • 27
    • 28444494392 scopus 로고    scopus 로고
    • Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts
    • Lin C, Mueller LA, McCarthy J, Crouzillat D, Pétiard V, Tanksley SD (2005) Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts. Theor Appl Genet 112: 114-130
    • (2005) Theor Appl Genet , vol.112 , pp. 114-130
    • Lin, C.1    Mueller, L.A.2    McCarthy, J.3    Crouzillat, D.4    Pétiard, V.5    Tanksley, S.D.6
  • 28
    • 34848855463 scopus 로고    scopus 로고
    • Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development
    • Liu Z, Adams KL (2007) Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development. Curr Biol 17: 1669-1674
    • (2007) Curr Biol , vol.17 , pp. 1669-1674
    • Liu, Z.1    Adams, K.L.2
  • 30
    • 36448946568 scopus 로고    scopus 로고
    • Towards a phylogeny for Coffea (Rubiaceae): Identifying wellsupported lineages based on nuclear and plastid DNA sequences
    • Maurin O, Davis AP, Chester M, Mvungi EF, Jaufeerally-Fakim Y, Fay MF (2007) Towards a phylogeny for Coffea (Rubiaceae): identifying wellsupported lineages based on nuclear and plastid DNA sequences. Ann Bot (Lond) 100: 1565-1583
    • (2007) Ann Bot (Lond) , vol.100 , pp. 1565-1583
    • Maurin, O.1    Davis, A.P.2    Chester, M.3    Mvungi, E.F.4    Jaufeerally-Fakim, Y.5    Fay, M.F.6
  • 31
    • 0242571470 scopus 로고
    • Breeding for low seed caffeine content of coffee (Coffea L.) by interspecific hybridization
    • Mazzafera P, Carvalho A (1991) Breeding for low seed caffeine content of coffee (Coffea L.) by interspecific hybridization. Euphytica 59: 55-60
    • (1991) Euphytica , vol.59 , pp. 55-60
    • Mazzafera, P.1    Carvalho, A.2
  • 32
    • 0346373740 scopus 로고    scopus 로고
    • Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags
    • Mochida K, Yamazaki Y, Ogihara Y (2003) Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol Genet Genomics 270: 371-377
    • (2003) Mol Genet Genomics , vol.270 , pp. 371-377
    • Mochida, K.1    Yamazaki, Y.2    Ogihara, Y.3
  • 36
    • 0008216487 scopus 로고    scopus 로고
    • Pachytene chromosome morphology in Coffea L. II. C. arabica L. complement
    • Pinto-Maglio CAF, Cruz ND (1998) Pachytene chromosome morphology in Coffea L. II. C. arabica L. complement. Caryologia 51: 19-35
    • (1998) Caryologia , vol.51 , pp. 19-35
    • Pinto-Maglio, C.A.F.1    Cruz, N.D.2
  • 38
    • 4444337502 scopus 로고    scopus 로고
    • Mathematics of quantitative kinetic PCR and the application of standard curves
    • Rutledge RG, Côté C (2003) Mathematics of quantitative kinetic PCR and the application of standard curves. Nucleic Acids Res 31: e93
    • (2003) Nucleic Acids Res , vol.31
    • Rutledge, R.G.1    Côté, C.2
  • 39
    • 0033738881 scopus 로고    scopus 로고
    • Research on the rust fungi during the twentieth century
    • Staples RC (2000) Research on the rust fungi during the twentieth century. Annu Rev Phytopathol 38: 49-69
    • (2000) Annu Rev Phytopathol , vol.38 , pp. 49-69
    • Staples, R.C.1
  • 40
    • 0036942349 scopus 로고    scopus 로고
    • AFLP analysis of genetic diversity within and among Coffea arabica cultivars
    • Steiger L, Nagai C, Moore H, Morden W, Osgood V, Ming R (2002) AFLP analysis of genetic diversity within and among Coffea arabica cultivars. Theor Appl Genet 105: 209-215
    • (2002) Theor Appl Genet , vol.105 , pp. 209-215
    • Steiger, L.1    Nagai, C.2    Moore, H.3    Morden, W.4    Osgood, V.5    Ming, R.6
  • 41
    • 0001792190 scopus 로고
    • Some observations on Coffea arabica L. in Ethiopia
    • Sylvain PG (1955) Some observations on Coffea arabica L. in Ethiopia. Turrialba 6: 37-53
    • (1955) Turrialba , vol.6 , pp. 37-53
    • Sylvain, P.G.1
  • 43
    • 33750305245 scopus 로고    scopus 로고
    • QualitySNP: A pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploidy species
    • Tang J, Vosman B, Voorrips RE, van der Linden CG, Leunissen JAM (2006) QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploidy species. BMC Bioinformatics 7: 438
    • (2006) BMC Bioinformatics , vol.7 , pp. 438
    • Tang, J.1    Vosman, B.2    Voorrips, R.E.3    van der Linden, C.G.4    Leunissen, J.A.M.5


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