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Biochimica et Biophysica Acta - Biomembranes

Volumn 1808, Issue 12, 2011, Pages 2954-2964

ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions

(6) Gyimesi, Gergely a,b Ramachandran, Srinivas c Kota, Pradeep c Dokholyan, Nikolay V c Sarkadi, Balázs a Hegedus, Tamás a,b

a INSTITUTE OF EXPERIMENTAL MEDICINE (Hungary)

b SEMMELWEIS UNIVERSITY (Hungary)

c UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE (United States)

Author keywords

ABC transporter; Constant contact model; Membrane bilayer; Molecular dynamic; Multi drug resistance

Indexed keywords

ABC TRANSPORTER; ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATE;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; HYDROLYSIS; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEOTIDE BINDING SITE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN STRUCTURE;

ADENOSINE TRIPHOSPHATE; ATP-BINDING CASSETTE TRANSPORTERS; HYDROLYSIS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; PROTEIN STRUCTURE, SECONDARY;

EID: 84860417445 PISSN: 00052736 EISSN: 18792642 Source Type: Journal
DOI: 10.1016/j.bbamem.2011.07.038 Document Type: Article

Times cited : (41)

References (64)

1
- 85163545088
- Academic Press NY
- I.B. Holland, S.P.C. Cole, K. Kuchler, and C.F. Higgins ABC Proteins: From Bacteria to Man 2003 Academic Press NY
- (2003) ABC Proteins: From Bacteria to Man
- Holland, I.B.¹ Cole, S.P.C.² Kuchler, K.³ Higgins, C.F.⁴

2
- 31844444140
- M.M. Gottesman, and V. Ling FEBS Lett. 580 2006 998 1009
- (2006) FEBS Lett. , vol.580 , pp. 998-1009
- Gottesman, M.M.¹ Ling, V.²

3
- 43149118341
- G. Szakacs, A. Varadi, C. Ozvegy-Laczka, and B. Sarkadi Drug Discov. Today 13 2008 379 393
- (2008) Drug Discov. Today , vol.13 , pp. 379-393
- Szakacs, G.¹ Varadi, A.² Ozvegy-Laczka, C.³ Sarkadi, B.⁴

4
- 67650685020
- P.D. Eckford, and F.J. Sharom Chem. Rev. 109 2009 2989 3011
- (2009) Chem. Rev. , vol.109 , pp. 2989-3011
- Eckford, P.D.¹ Sharom, F.J.²

5
- 0001607723
- J.E. Walker, M. Saraste, M.J. Runswick, and N.J. Gay EMBO J. 1 1982 945 951
- (1982) EMBO J. , vol.1 , pp. 945-951
- Walker, J.E.¹ Saraste, M.² Runswick, M.J.³ Gay, N.J.⁴

6
- 0029830549
- S. Wilken, G. Schmees, and E. Schneider Mol. Microbiol. 22 1996 655 666
- (1996) Mol. Microbiol. , vol.22 , pp. 655-666
- Wilken, S.¹ Schmees, G.² Schneider, E.³

7
- 0036342413
- P.C. Smith, N. Karpowich, L. Millen, J.E. Moody, J. Rosen, P.J. Thomas, and J.F. Hunt Mol. Cell 10 2002 139 149
- (2002) Mol. Cell , vol.10 , pp. 139-149
- Smith, P.C.¹ Karpowich, N.² Millen, L.³ Moody, J.E.⁴ Rosen, J.⁵ Thomas, P.J.⁶ Hunt, J.F.⁷

8
- 0141527345
- J. Chen, G. Lu, J. Lin, A.L. Davidson, and F.A. Quiocho Mol. Cell 12 2003 651 661
- (2003) Mol. Cell , vol.12 , pp. 651-661
- Chen, J.¹ Lu, G.² Lin, J.³ Davidson, A.L.⁴ Quiocho, F.A.⁵

9
- 33748644877
- R.J. Dawson, and K.P. Locher Nature 443 2006 180 185
- (2006) Nature , vol.443 , pp. 180-185
- Dawson, R.J.¹ Locher, K.P.²

10
- 75149135645
- I.D. Kerr, P.M. Jones, and A.M. George FEBS J. 277 2010 550 563
- (2010) FEBS J. , vol.277 , pp. 550-563
- Kerr, I.D.¹ Jones, P.M.² George, A.M.³

11
- 37649004412
- A. Ward, C.L. Reyes, J. Yu, C.B. Roth, and G. Chang Proc. Natl. Acad. Sci. U. S. A. 104 48 2007 19005 19010
- (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , Issue.48 , pp. 19005-19010
- Ward, A.¹ Reyes, C.L.² Yu, J.³ Roth, C.B.⁴ Chang, G.⁵

12
- 63449139456
- S.G. Aller, J. Yu, A. Ward, Y. Weng, S. Chittaboina, R. Zhuo, P.M. Harrell, Y.T. Trinh, Q. Zhang, I.L. Urbatsch, and G. Chang Science 323 2009 1718 1722
- (2009) Science , vol.323 , pp. 1718-1722
- Aller, S.G.¹ Yu, J.² Ward, A.³ Weng, Y.⁴ Chittaboina, S.⁵ Zhuo, R.⁶ Harrell, P.M.⁷ Trinh, Y.T.⁸ Zhang, Q.⁹ Urbatsch, I.L.¹⁰ Chang, G.¹¹

13
- 0032542358
- L.W. Hung, I.X. Wang, K. Nikaido, P.Q. Liu, G.F. Ames, and S.H. Kim Nature 396 1998 703 707
- (1998) Nature , vol.396 , pp. 703-707
- Hung, L.W.¹ Wang, I.X.² Nikaido, K.³ Liu, P.Q.⁴ Ames, G.F.⁵ Kim, S.H.⁶

14
- 77954613193
- J. Aittoniemi, H. de Wet, F.M. Ashcroft, and M.S. Sansom PLoS Comput. Biol. 6 2010 e1000762
- (2010) PLoS Comput. Biol. , vol.6 , pp. 1000762
- Aittoniemi, J.¹ De Wet, H.² Ashcroft, F.M.³ Sansom, M.S.⁴

15
- 77449137874
- J.W. Weng, K.N. Fan, and W.N. Wang J. Biol. Chem. 285 2010 3053 3063
- (2010) J. Biol. Chem. , vol.285 , pp. 3053-3063
- Weng, J.W.¹ Fan, K.N.² Wang, W.N.³

16
- 47049101437
- T.W. Loo, and D.M. Clarke Arch. Biochem. Biophys. 476 2008 51 64
- (2008) Arch. Biochem. Biophys. , vol.476 , pp. 51-64
- Loo, T.W.¹ Clarke, D.M.²

17
- 70349785109
- P. Zou, M. Bortolus, and H.S. McHaourab J. Mol. Biol. 393 2009 586 597
- (2009) J. Mol. Biol. , vol.393 , pp. 586-597
- Zou, P.¹ Bortolus, M.² McHaourab, H.S.³

18
- 67650546951
- M. Grote, Y. Polyhach, G. Jeschke, H.J. Steinhoff, E. Schneider, and E. Bordignon J. Biol. Chem. 284 2009 17521 17526
- (2009) J. Biol. Chem. , vol.284 , pp. 17521-17526
- Grote, M.¹ Polyhach, Y.² Jeschke, G.³ Steinhoff, H.J.⁴ Schneider, E.⁵ Bordignon, E.⁶

19
- 58149512047
- B.A. Goetz, E. Perozo, and K.P. Locher FEBS Lett. 583 2009 266 270
- (2009) FEBS Lett. , vol.583 , pp. 266-270
- Goetz, B.A.¹ Perozo, E.² Locher, K.P.³

20
- 67650090498
- M.A. Do Cao, S. Crouzy, M. Kim, M. Becchi, D.S. Cafiso, A. Di Pietro, and J.M. Jault Protein Sci. 18 2009 1507 1520
- (2009) Protein Sci. , vol.18 , pp. 1507-1520
- Do Cao, M.A.¹ Crouzy, S.² Kim, M.³ Becchi, M.⁴ Cafiso, D.S.⁵ Di Pietro, A.⁶ Jault, J.M.⁷

21
- 58849132410
- K.M. Westfahl, J.A. Merten, A.H. Buchaklian, and C.S. Klug Biochemistry 47 2008 13878 13886
- (2008) Biochemistry , vol.47 , pp. 13878-13886
- Westfahl, K.M.¹ Merten, J.A.² Buchaklian, A.H.³ Klug, C.S.⁴

22
- 77952003799
- A. Gustot, Smriti, J.M. Ruysschaert, H. McHaourab, and C. Govaerts J. Biol. Chem. 285 19 2010 14144 14151
- (2010) J. Biol. Chem. , vol.285 , Issue.19 , pp. 14144-14151
- Gustot, A.¹ Smriti² Ruysschaert, J.M.³ McHaourab, H.⁴ Govaerts, C.⁵

23
- 57649134969
- T.W. Loo, M.C. Bartlett, and D.M. Clarke J. Biol. Chem. 283 2008 28190 28197
- (2008) J. Biol. Chem. , vol.283 , pp. 28190-28197
- Loo, T.W.¹ Bartlett, M.C.² Clarke, D.M.³

24
- 34547911075
- T.W. Loo, M.C. Bartlett, and D.M. Clarke Biochemistry 46 2007 9328 9336
- (2007) Biochemistry , vol.46 , pp. 9328-9336
- Loo, T.W.¹ Bartlett, M.C.² Clarke, D.M.³

25
- 77951877993
- T.W. Loo, M.C. Bartlett, and D.M. Clarke Biochem. Biophys. Res. Commun. 395 3 2010 436 440
- (2010) Biochem. Biophys. Res. Commun. , vol.395 , Issue.3 , pp. 436-440
- Loo, T.W.¹ Bartlett, M.C.² Clarke, D.M.³

26
- 66149139241
- P.M. Jones, and A.M. George Proteins 75 2009 387 396
- (2009) Proteins , vol.75 , pp. 387-396
- Jones, P.M.¹ George, A.M.²

27
- 34547943910
- P.M. Jones, and A.M. George J. Biol. Chem. 282 2007 22793 22803
- (2007) J. Biol. Chem. , vol.282 , pp. 22793-22803
- Jones, P.M.¹ George, A.M.²

28
- 0036789902
- P.M. Jones, and A.M. George Proc. Natl. Acad. Sci. U. S. A. 99 2002 12639 12644
- (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 12639-12644
- Jones, P.M.¹ George, A.M.²

29
- 69949136235
- S. Newstead, P.W. Fowler, P. Bilton, E.P. Carpenter, P.J. Sadler, D.J. Campopiano, M.S. Sansom, and S. Iwata Structure 17 2009 1213 1222
- (2009) Structure , vol.17 , pp. 1213-1222
- Newstead, S.¹ Fowler, P.W.² Bilton, P.³ Carpenter, E.P.⁴ Sadler, P.J.⁵ Campopiano, D.J.⁶ Sansom, M.S.⁷ Iwata, S.⁸

30
- 58149359858
- P.C. Wen, and E. Tajkhorshid Biophys. J. 95 2008 5100 5110
- (2008) Biophys. J. , vol.95 , pp. 5100-5110
- Wen, P.C.¹ Tajkhorshid, E.²

31
- 22544453328
- J.D. Campbell, and M.S. Sansom FEBS Lett. 579 2005 4193 4199
- (2005) FEBS Lett. , vol.579 , pp. 4193-4199
- Campbell, J.D.¹ Sansom, M.S.²

32
- 55549094466
- L. He, A.A. Aleksandrov, A.W. Serohijos, T. Hegedus, L.A. Aleksandrov, L. Cui, N.V. Dokholyan, and J.R. Riordan J. Biol. Chem. 283 39 2008 26383 26390
- (2008) J. Biol. Chem. , vol.283 , Issue.39 , pp. 26383-26390
- He, L.¹ Aleksandrov, A.A.² Serohijos, A.W.³ Hegedus, T.⁴ Aleksandrov, L.A.⁵ Cui, L.⁶ Dokholyan, N.V.⁷ Riordan, J.R.⁸

33
- 65249133460
- G. Oancea, M.L. O'Mara, W.F. Bennett, D.P. Tieleman, R. Abele, and R. Tampe Proc. Natl. Acad. Sci. U. S. A. 106 2009 5551 5556
- (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 5551-5556
- Oancea, G.¹ O'Mara, M.L.² Bennett, W.F.³ Tieleman, D.P.⁴ Abele, R.⁵ Tampe, R.⁶

34
- 7244240754
- E.O. Oloo, and D.P. Tieleman J. Biol. Chem. 279 2004 45013 45019
- (2004) J. Biol. Chem. , vol.279 , pp. 45013-45019
- Oloo, E.O.¹ Tieleman, D.P.²

35
- 34147168584
- J. Sonne, C. Kandt, G.H. Peters, F.Y. Hansen, M.Ø. Jensen, and D.P. Tieleman Biophys. J. 92 2007 2727 2734
- (2007) Biophys. J. , vol.92 , pp. 2727-2734
- Sonne, J.¹ Kandt, C.² Peters, G.H.³ Hansen, F.Y.⁴ Jensen, M.Ø.⁵ Tieleman, D.P.⁶

36
- 33947284958
- A. Ivetac, J.D. Campbell, and M.S. Sansom Biochemistry 46 2007 2767 2778
- (2007) Biochemistry , vol.46 , pp. 2767-2778
- Ivetac, A.¹ Campbell, J.D.² Sansom, M.S.³

37
- 0029559159
- A.E. Senior, M.K. al-Shawi, and I.L. Urbatsch FEBS Lett. 377 1995 285 289
- (1995) FEBS Lett. , vol.377 , pp. 285-289
- Senior, A.E.¹ Al-Shawi, M.K.² Urbatsch, I.L.³

38
- 41049089116
- A. Ivetac, and M.S. Sansom Eur. Biophys. J. 37 2008 403 409
- (2008) Eur. Biophys. J. , vol.37 , pp. 403-409
- Ivetac, A.¹ Sansom, M.S.²

39
- 27344454932
- D. Van Der Spoel, E. Lindahl, B. Hess, G. Groenhof, A.E. Mark, and H.J. Berendsen J. Comput. Chem. 26 2005 1701 1718
- (2005) J. Comput. Chem. , vol.26 , pp. 1701-1718
- Van Der Spoel, D.¹ Lindahl, E.² Hess, B.³ Groenhof, G.⁴ Mark, A.E.⁵ Berendsen, H.J.⁶

40
- 0033873929
- M.A. Marti-Renom, A.C. Stuart, A. Fiser, R. Sanchez, F. Melo, and A. Sali Annu. Rev. Biophys. Biomol. Struct. 29 2000 291 325
- (2000) Annu. Rev. Biophys. Biomol. Struct. , vol.29 , pp. 291-325
- Marti-Renom, M.A.¹ Stuart, A.C.² Fiser, A.³ Sanchez, R.⁴ Melo, F.⁵ Sali, A.⁶

41
- 36448991500
- M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, R. Lopez, J.D. Thompson, T.J. Gibson, and D.G. Higgins Bioinformatics 23 2007 2947 2948
- (2007) Bioinformatics , vol.23 , pp. 2947-2948
- Larkin, M.A.¹ Blackshields, G.² Brown, N.P.³ Chenna, R.⁴ McGettigan, P.A.⁵ McWilliam, H.⁶ Valentin, F.⁷ Wallace, I.M.⁸ Wilm, A.⁹ Lopez, R.¹⁰ Thompson, J.D.¹¹ Gibson, T.J.¹² Higgins, D.G.¹³

42
- 47049126229
- C. Globisch, I.K. Pajeva, and M. Wiese ChemMedChem 3 2008 280 295
- (2008) ChemMedChem , vol.3 , pp. 280-295
- Globisch, C.¹ Pajeva, I.K.² Wiese, M.³

43
- 0034786532
- G.E. Tusnady, and I. Simon Bioinformatics 17 2001 849 850
- (2001) Bioinformatics , vol.17 , pp. 849-850
- Tusnady, G.E.¹ Simon, I.²

44
- 16344362822
- G.E. Tusnady, Z. Dosztanyi, and I. Simon Bioinformatics 21 2005 1276 1277
- (2005) Bioinformatics , vol.21 , pp. 1276-1277
- Tusnady, G.E.¹ Dosztanyi, Z.² Simon, I.³

45
- 73349111643
- C.L. McClendon, G. Friedland, D.L. Mobley, H. Amirkhani, and M.P. Jacobson J. Chem. Theory Comput. 5 2009 2486 2502
- (2009) J. Chem. Theory Comput. , vol.5 , pp. 2486-2502
- McClendon, C.L.¹ Friedland, G.² Mobley, D.L.³ Amirkhani, H.⁴ Jacobson, M.P.⁵

46
- 0020997912
- W. Kabsch, and C. Sander Biopolymers 22 1983 2577 2637
- (1983) Biopolymers , vol.22 , pp. 2577-2637
- Kabsch, W.¹ Sander, C.²

47
- 0015222647
- B. Lee, and F.M. Richards J. Mol. Biol. 55 1971 379 400
- (1971) J. Mol. Biol. , vol.55 , pp. 379-400
- Lee, B.¹ Richards, F.M.²

48
- 0028103275
- Collaborative Computational Project N.
- N. Collaborative Computational Project Acta Crystallogr. D. Biol. Crystallogr. 50 1994 760 763
- (1994) Acta Crystallogr. D. Biol. Crystallogr. , vol.50 , pp. 760-763

49
- 4444282928
- C. Oostenbrink, A. Villa, A.E. Mark, and W.F. van Gunsteren J. Comput. Chem. 25 2004 1656 1676
- (2004) J. Comput. Chem. , vol.25 , pp. 1656-1676
- Oostenbrink, C.¹ Villa, A.² Mark, A.E.³ Van Gunsteren, W.F.⁴

50
- 65249151900
- A. Kukol J. Chem. Theory Comput. 5 2009 615 626
- (2009) J. Chem. Theory Comput. , vol.5 , pp. 615-626
- Kukol, A.¹

51
- 0029909604
- T.W. Loo, and D.M. Clarke J. Biol. Chem. 271 1996 27482 27487
- (1996) J. Biol. Chem. , vol.271 , pp. 27482-27487
- Loo, T.W.¹ Clarke, D.M.²

52
- 0037687304
- T.W. Loo, M.C. Bartlett, and D.M. Clarke J. Biol. Chem. 278 2003 13603 13606
- (2003) J. Biol. Chem. , vol.278 , pp. 13603-13606
- Loo, T.W.¹ Bartlett, M.C.² Clarke, D.M.³

53
- 34548507482
- J. Storm, M.L. O'Mara, E.H. Crowley, J. Peall, D.P. Tieleman, I.D. Kerr, and R. Callaghan Biochemistry 46 2007 9899 9910
- (2007) Biochemistry , vol.46 , pp. 9899-9910
- Storm, J.¹ O'Mara, M.L.² Crowley, E.H.³ Peall, J.⁴ Tieleman, D.P.⁵ Kerr, I.D.⁶ Callaghan, R.⁷

54
- 79955741987
- A.S. Oliveira, A.M. Baptista, and C.M. Soares Proteins 79 2011 1977 1990
- (2011) Proteins , vol.79 , pp. 1977-1990
- Oliveira, A.S.¹ Baptista, A.M.² Soares, C.M.³

55
- 79959352522
- J.M. Damas, A.S. Oliveira, A.M. Baptista, and C.M. Soares Protein Sci. 20 7 2011 1220 1230
- (2011) Protein Sci. , vol.20 , Issue.7 , pp. 1220-1230
- Damas, J.M.¹ Oliveira, A.S.² Baptista, A.M.³ Soares, C.M.⁴

56
- 78650108564
- J.P. Becker, F. Van Bambeke, P.M. Tulkens, and M. Prevost J. Phys. Chem. B. 114 2010 15948 15957
- (2010) J. Phys. Chem. B. , vol.114 , pp. 15948-15957
- Becker, J.P.¹ Van Bambeke, F.² Tulkens, P.M.³ Prevost, M.⁴

57
- 76249119203
- M. Kurylowicz, C.H. Yu, and R. Pomes Biophys. J. 98 2010 386 395
- (2010) Biophys. J. , vol.98 , pp. 386-395
- Kurylowicz, M.¹ Yu, C.H.² Pomes, R.³

58
- 72249085220
- H.H. Loeffler, and A. Kitao Biophys. J. 97 2009 2541 2549
- (2009) Biophys. J. , vol.97 , pp. 2541-2549
- Loeffler, H.H.¹ Kitao, A.²

59
- 41949139811
- E.J. Beck, Y. Yang, S. Yaemsiri, and V. Raghuram J. Biol. Chem. 283 2007 4957 4966
- (2007) J. Biol. Chem. , vol.283 , pp. 4957-4966
- Beck, E.J.¹ Yang, Y.² Yaemsiri, S.³ Raghuram, V.⁴

60
- 34250001164
- O. Keskin BMC Struct. Biol. 7 2007 31
- (2007) BMC Struct. Biol. , vol.7 , pp. 31
- Keskin, O.¹

61
- 33745686037
- L. Vaccaro, V. Koronakis, and M.S. Sansom Biophys. J. 91 2006 558 564
- (2006) Biophys. J. , vol.91 , pp. 558-564
- Vaccaro, L.¹ Koronakis, V.² Sansom, M.S.³

62
- 58849086773
- T. Stockner, S.J. de Vries, A.M. Bonvin, G.F. Ecker, and P. Chiba FEBS J. 276 2009 964 972
- (2009) FEBS J. , vol.276 , pp. 964-972
- Stockner, T.¹ De Vries, S.J.² Bonvin, A.M.³ Ecker, G.F.⁴ Chiba, P.⁵

63
- 77958007499
- R. Doshi, B. Woebking, and H.W. van Veen Proteins 78 14 2010 2867 2872
- (2010) Proteins , vol.78 , Issue.14 , pp. 2867-2872
- Doshi, R.¹ Woebking, B.² Van Veen, H.W.³

64
- 77952567948
- M.F. Rosenberg, C.J. Oleschuk, P. Wu, Q. Mao, R.G. Deeley, S.P. Cole, and R.C. Ford J. Struct. Biol. 170 2010 540 547
- (2010) J. Struct. Biol. , vol.170 , pp. 540-547
- Rosenberg, M.F.¹ Oleschuk, C.J.² Wu, P.³ Mao, Q.⁴ Deeley, R.G.⁵ Cole, S.P.⁶ Ford, R.C.⁷

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