TMDET: Web server for detecting transmembrane regions of proteins by using their 3D coordinates

Bioinformatics

Volumn 21, Issue 7, 2005, Pages 1276-1277

  Tusnády, Gábor E ^a   Dosztányi, Zsuzsanna ^a   Simon, István ^a  

^a INSTITUTE OF ENZYMOLOGY   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

ALGORITHM; ARTICLE; CALCULATION; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; HYDROPHOBICITY; INFORMATION PROCESSING; INTERNET; LIPID BILAYER; MUTATIONAL ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATA BANK; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

EID: 16344362822     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti121     Document Type: Article

References (8)

1. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
2. DeLano, W.L. (2003) The PyMOL Molecular Graphich System DeLano Scientific LLC San Carlos, CA, USA. http://pymol.sourceforge.net.
3. Kabsch, W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
4. Lee,A.G. (2003) Lipid-protein interactions in biological membranes: A structural perspective. Biochim. Biophys. Acta, 1612, 1-40.
5. Lee,B. and Richards,F.M. (1971) The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol., 55, 379-400.
6. Ostermeier,C. and Michel,H. (1997) Crystallization of membrane proteins. Curr. Opin. Struct. Biol., 7, 697-701.
7. Tusnády,G.E., Dosztányi, Zs. and Simon,I. (2004) Transmembrane proteins in Protein Data Bank: identification and classification. Bioinformatics, 20, 2964-2972.
8. Tusnády,G.E., Dosztányi,Zs. and Simon,I. (2005) PDB-TM: selection and membrane localization of transmembrane proteins in the Protein Data Bank. Nucleic Acids Res., 33, D275-D278.