Acetobacter ghanensis sp. nov., a novel acetic acid bacterium isolated from traditional heap fermentations of Ghanaian cocoa beans

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 7, 2007, Pages 1647-1652

  Cleenwerck, Ilse ^a   Camu, Nicholas ^b   Engelbeen, Katrien ^a   De Winter, Tom ^b   Vandemeulebroecke, Katrien ^a   De Vos, Paul ^a,c   De Vuyst, Luc ^b  

^a GHENT UNIVERSITY   (Belgium)

^b VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ALCOHOL; AMMONIA; BACTERIAL DNA; CARBON; CATALASE; CYTOSINE; GLUCOSE; GLYCEROL; GUANINE; MALTOSE; METHANOL; NITROGEN; OXIDOREDUCTASE; RNA 16S;

ACETOBACTER; ACETOBACTER GHANENSIS; ACETOBACTER LOVANIENSIS; ACETOBACTER SYZYGII; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CACAO; DNA CONTENT; DNA DNA HYBRIDIZATION; FERMENTATION; GENOTYPE; GRAM NEGATIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA SEQUENCE; TAXONOMY;

ACETIC ACID; ACETOBACTER; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CACAO; CATALASE; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; ETHANOL; FERMENTATION; FOOD MICROBIOLOGY; GENES, RRNA; GLUCOSE; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDATION-REDUCTION; OXIDOREDUCTASES; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ACETOBACTER; ACETOBACTER LOVANIENSIS; ACETOBACTER SYZYGII; BACTERIA (MICROORGANISMS); NEGIBACTERIA; THEOBROMA CACAO;

EID: 34547469423     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64840-0     Document Type: Article

References (30)

1. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D. & Swings, J. (2002). Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int J Syst Evol Microbiol 52, 1551-1558.
2. Coenye, T., Falsen, E., Vancanneyt, M., Hoste, B., Govan, J. R. W., Kersters, K. & Vandamme, P. (1999). Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol 49, 405-413.
3. Dellaglio, F., Cleenwerck, I., Felis, G. E., Engelbeen, K., Janssens, D. & Marzotto, M. (2005). Description of Gluconacetobacter swingsii sp. nov., and Gluconacetobacter rhaeticus sp. nov., isolated from Italian apple fruit. Int J Syst Evol Microbiol 55, 2365-2370.
4. Dutta, D. & Gachhui, R. (2006). Novel nitrogen-fixing Acetobacter nitrogenifigens sp. nov., isolated from Kombucha tea. Int J Syst Evol Microbiol 56, 1899-1903.
5. Ezaki, T., Hashimoto, T. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridisation in microdilution wells as an alternative to membrane filter hybridisation in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Franke, I. H., Fegan, M., Hayward, C., Leonard, G., Stackebrandt, E. & Sly, L. I. (1999). Description of Gluconacetobacter sacchari sp. nov., a new species of acetic acid bacterium isolated from the leaf sheath of sugar cane and from the pink sugar-cane mealy bug. Int J Syst Bacteriol 49, 1681-1693.
8. Franz, C. M. A. P., Vancanneyt, M., Vandemeulebroecke, K., De Wachter, M., Cleenwerck, I., Hoste, B., Schillinger, U., Holzapfel, W. H. & Swings, J. (2006). Pediococcus stilesii sp. nov., isolated from maize grains. Int J Syst Evol Microbiol 56, 329-333.
9. Gevers, D., Huys, G. & Swings, J. (2001). Applicability of rep-PCR fingerprinting for differentiation of Lactobacillus species. FEMS Microbiol Lett 205, 31-36.
10. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
11. Gosselé, F., Swings, J. & De Ley, J. (1980). A rapid, simple and simultaneous detection of 2-keto, 5-keto- and 2,5-diketogluconic acids by thin-layer chromatography in culture media of acetic acid bacteria. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 1 Orig Reihe C1, 178-181.
12. Greenberg, D. E., Porcella, S. F., Stock, F., Wong, A., Conville, P. S., Murray, P. R., Holland, S. M. & Zelazny, A. M. (2006). Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae. Int J Syst Evol Microbiol 56, 2609-2616.
13. Hansen, C. E., del Olmo, M. & Burri, C. (1998). Enzyme activities in cocoa beans during fermentation. J Sci Food Agric 77, 273-281.
14. Jojima, Y., Mihara, Y., Suzuki, S., Yokozeki, K., Yamanaka, S. & Fudou, R. (2004). Saccharibacter floricola gen. nov., sp. nov., a novel osmophilic acetic acid bacterium isolated from pollen. Int J Syst Evol Microbiol 54, 2263-2267.
15. Kersters, K., Lisdiyanti, P., Komagata, K. & Swings, J. (2006). The family Acetobacteraceae: the genera Acetobacter, Acidomonas, Asaia, Gluconacetobacter, Gluconobacter, and Kozakia. In The Prokaryotes, 3rd edn, vol. 5, pp. 163-200. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer-Verlag.
16. Lisdiyanti, P., Kawasaki, H., Seki, T., Yamada, Y., Uchimura, T. & Komagata, K. (2000). Systematic study of the genus Acetobacter with descriptions of Acetobacter indonensiensis sp. nov., Acetobacter tropicalis sp. nov., Acetobacter orleanensis (Henneberg 1906) comb. nov., Acetobacter lovaniensis (Frateur 1950) comb. nov., and Acetobacter estunensis (Carr 1958) comb. nov. J Gen Appl Microbiol 46, 147-165.
17. Lisdiyanti, P., Kawasaki, H., Seki, T., Yamada, Y., Uchimura, T. & Komagata, K. (2001). Identification of Acetobacter strains isolated from Indonesian sources, and proposals of Acetobacter syzygii sp. nov., Acetobacter cibinongensis sp. nov., and Acetobacter orientalis sp. nov. J Gen Appl Microbiol 47, 119-131.
18. Loganathan, P. & Nair, S. (2004). Swaminathania salitorans gen. nov., sp. nov., a salt-tolerant, nitrogen-fixing and phosphate-solubilizing bacterium from wild rice (Porterisia coarctata Tateoka). Int J Syst Evol Microbiol 54, 1185-1190.
19. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
20. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetics trees. Mol Biol Evol 4, 406-425.
21. Schwan, R. F. & Wheals, A. E. (2004). The microbiology of cocoa fermentation and its role in chocolate quality. Crit Rev Food Sci Nutr 44, 205-221.
22. Silva, L. R., Cleenwerck, I., Rivas, R., Swings, J., Trujillo, M. E., Willems, A. & Velázquez, E. (2006). Acetobacter oeni sp. nov., isolated from spoiled red wine. Int J Syst Evol Microbiol 56, 21-24.
23. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kampfer, P., Maiden, M. C. J., Nesme, X., Rossello-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
24. 5-PCR for identification of Enterococcus spp. FEMS Microbiol Lett 247, 59-63.
25. Thompson, S. S., Miller, K. B. & Lopez, A. S. (2001). Cocoa and coffee. In Food Microbiology: Fundamentals and Frontiers, 2nd edn, pp. 721-733. Edited by M. P. Doyle, L. R. Beuchat & T. J. Montville. Washington, DC: American Society for Microbiology.
26. Urakami, T., Tamaoka, J., Suzuki, K.-I. & Komagata, K. (1989). Acidomonas gen. nov., incorporating Acetobacter methanolicus as Acidomonas methanolica comb. nov. Int J Syst Bacteriol 39, 50-55.
27. + through its growth-associated production. Appl Environ Microbiol 72, 5204-5210.
28. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
29. Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Green Publishing and Wiley-Interscience.
30. Yukphan, P., Malimas, T., Potacharoen, W., Tanasupawat, S., Tanticharoen, M. & Yamada, Y. (2005). Neoasaia chiangmaiensis gen. nov., sp. nov., a novel osmotolerant acetic acid bacterium in the α-Proteobacteria. J Gen Appl Microbiol 51, 301-311.