Bacterial diversity in Philippine fermented mustard (burong mustasa) as revealed by 16S rRNA gene analysis

Beneficial Microbes

Volumn 2, Issue 4, 2011, Pages 263-271

  Larcia, L L H ^a   Estacio, R C ^b   Dalmacio, L M M ^b  

^a UNIVERSITY OF THE PHILIPPINES MANILA   (Philippines)

^b UNIVERSITY OF THE PHILIPPINES MANILA   (Philippines)

Author keywords

16S rDNA; Burong mustasa; DGGE; Mustard fermentation; Philippine fermented food

Indexed keywords

BACTERIAL DNA; DNA 16S; GENOMIC DNA; RNA 16S; RIBOSOME DNA;

AMPLICON; ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA ISOLATION; FUSOBACTERIUM; GENE SEQUENCE; GENETIC ANALYSIS; LACTIC ACID BACTERIUM; LACTOBACILLUS; MICROBIAL DIVERSITY; MOLECULAR CLONING; MUSTARD; NONHUMAN; POLYMERASE CHAIN REACTION; STREPTOBACILLUS; BACTERIUM; BIOTA; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; PHILIPPINES; PHYLOGENY;

BACTERIA; BIOTA; CLUSTER ANALYSIS; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FOOD MICROBIOLOGY; PHILIPPINES; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84858613347     PISSN: 18762883     EISSN: 18762891     Source Type: Journal    
DOI: 10.3920/BM2011.0019     Document Type: Article

References (17)

1. Ampe, F., Ben Omar, N. and Guyot, J.P., 1999. Culture-independent quantification of physiologically-active microbial groups in fermented foods using rRNA-targeted oligonucleotide probes: application to pozol, a Mexican lactic acid fermented maize dough. Journal of Applied Microbiology 87: 131-140.
2. Bjorkroth, K., Schillinger, U., Geisen, R., Weiss, N., Hoste, B. and Holzapfel, W., 2002. Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. International Journal of Systematic and Evolutionary Microbiology 52: 141-148.
3. Cocolin, L., Manzano, M., Cantoni, C. and Comi, G., 2001. Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages. Applied and Environmental Microbiology 67: 5113-5121.
4. Dalmacio, L.M.M., Angeles, A.K., Larcia, L.L.H., Parungao-Balolong, M. and Estacio, R.C., 2011. Assessment of microbial diversity in Philippine fermented food products through polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE). Beneficial Microbes 2: 273-281.
5. Doyle, J.J. and Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
6. Gervacio, A. and Lim, V., 2007. Probiotic characterization of bacteriocinogenic lactic acid bacteria isolated from fermented foods of selected areas in Central Luzon. University of the Philippines Manila, Department of Biology, College of Arts and Sciences, Manila, Philippines.
7. Hutkins, A., 2010. Fermented food products. Springer, Berlin, Germany.
8. Madigan, M.T., Martinko, J.M. and Parker, J., 2003. Brock biology of microorganisms, 10th ed. Prentice Hall, Upper Saddle River, NJ, USA.
9. Quisumbing, E., 1978. Medicinal plants of the Philippines. Katha Publishing Inc., Caloocan City, Philippines.
10. Sanchez, P., 2008. Philippine fermented foods: principles and technology. The University of the Philippines Press, Quezon City, Phillipines.
11. Saitou, N. and Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
12. Scott, R. and Sullivan, W.C., 2008. Ecology of fermented foods. Human Ecology Review 15: 25-31.
13. Smalla, K., 2004. Culture-independent microbiology. In: Bull, A.T. (ed.) Microbial diversity and bioprospecting. ASM, Washington, DC, USA, pp. 88-93.
14. Tamura, K., Dudley, J., Nei, M. and Kumar, S., 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
15. Tamura, K., Nei, M. and Kumar, S., 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the USA 101: 11030-11035.
16. Temmerman, R., Scheirlinck, I., Huys, G. and Swings, J., 2003. Culture-independent analysis of probiotic products by denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 69: 220-226.
17. Verma, L.R. and Joshi, V.K., 2000. Postharvest technology of fruits and vegetables: handling, processing, fermentation, and waste management. Vol. 1. Indus Publishing, New Delhi, India