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Volumn 108, Issue 2, 2012, Pages 124-133

Worldwide genetic structure in 37 genes important in telomere biology

Author keywords

HapMap; HGDP; Selection; Single nucleotide polymorphism; Telomere

Indexed keywords

PROTEIN;

EID: 84856061965     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2011.55     Document Type: Article
Times cited : (11)

References (71)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signitures of natural selection
    • DOI 10.1101/gr.631202
    • Akey J, Zhang G, Zhang K, Jin L, Shriver M (2002). Interrogating a high-density SNP map for signatures of natural selection. Genome Res 12: 1805-1814. (Pubitemid 35469929)
    • (2002) Genome Research , vol.12 , Issue.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 2
    • 67650079362 scopus 로고    scopus 로고
    • Syndromes of telomere shortening
    • Armanios M (2009). Syndromes of telomere shortening. Annu Rev Genomics Hum Genet 10: 45-61.
    • (2009) Annu Rev Genomics Hum Genet , vol.10 , pp. 45-61
    • Armanios, M.1
  • 3
    • 42149185640 scopus 로고    scopus 로고
    • Telomeres and aging
    • DOI 10.1152/physrev.00026.2007
    • Aubert G, Lansdorp P (2008). Telomeres and aging. Physiol Rev 88: 557-579. (Pubitemid 351522746)
    • (2008) Physiological Reviews , vol.88 , Issue.2 , pp. 557-579
    • Aubert, G.1    Lansdorp, P.M.2
  • 4
    • 0037307413 scopus 로고    scopus 로고
    • Signatures of natural selection in the human genome
    • DOI 10.1038/nrg999
    • Bamshad M, Wooding S (2003). Signatures of natural selection in the human genome. Nat Rev Genet 4: 99-111. (Pubitemid 36150682)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.2 , pp. 99-111
    • Bamshad, M.1    Wooding, S.P.2
  • 5
    • 39749136156 scopus 로고    scopus 로고
    • Natural selection has driven population differentiation in modern humans
    • DOI 10.1038/ng.78, PII NG78
    • Barreiro L, Laval G, Quach H, Patin E, Quintana-Murci L (2008). Natural selection has driven population differentiation in modern humans. Nat Genet 40: 340-345. (Pubitemid 351311765)
    • (2008) Nature Genetics , vol.40 , Issue.3 , pp. 340-345
    • Barreiro, L.B.1    Laval, G.2    Quach, H.3    Patin, E.4    Quintana-Murci, L.5
  • 6
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • DOI 10.1093/bioinformatics/bth457
    • Barrett J, Fry B, Maller J, Daly M (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265. (Pubitemid 40202029)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 7
    • 34548667973 scopus 로고    scopus 로고
    • Telomere length, stem cells and aging
    • DOI 10.1038/nchembio.2007.38, PII NCHEMBIO200738
    • Blasco M (2007). Telomere length, stem cells and aging. Nat Chem Biol 3: 640-649. (Pubitemid 47417712)
    • (2007) Nature Chemical Biology , vol.3 , Issue.10 , pp. 640-649
    • Blasco, M.A.1
  • 8
    • 0030931491 scopus 로고    scopus 로고
    • Telomere shortening and tumor formation by mouse cells lacking telomerase RNA
    • DOI 10.1016/S0092-8674(01)80006-4
    • Blasco M, Lee H, Hande M, Samper E, Lansdorp PM, DePinho RA et al. (1997). Telomere shortening and tumor formation by mouse cells lacking telomerase RNA. Cell 91: 25-34. (Pubitemid 27431310)
    • (1997) Cell , vol.91 , Issue.1 , pp. 25-34
    • Blasco, M.A.1    Lee, H.-W.2    Hande, M.P.3    Samper, E.4    Lansdorp, P.M.5    DePinho, R.A.6    Greider, C.W.7
  • 10
    • 0037148271 scopus 로고    scopus 로고
    • Telomerase in the human organism
    • DOI 10.1038/sj/onc/1205083
    • Collins K, Mitchell J (2002). Telomerase in the human organism. Oncogene 21: 564-579. (Pubitemid 34146256)
    • (2002) Oncogene , vol.21 , Issue.4 REV. ISS. 1 , pp. 564-579
    • Collins, K.1    Mitchell, J.R.2
  • 11
    • 10344256183 scopus 로고    scopus 로고
    • Defective telomere lagging strand synthesis in cells lacking WRN helicase activity
    • DOI 10.1126/science.1103619
    • Crabbe L, Verdun R, Haggblom C, Karlseder J (2004). Defective telomere lagging strand synthesis in cells lacking WRN helicase activity. Science 306: 1951-1953. (Pubitemid 39627862)
    • (2004) Science , vol.306 , Issue.5703 , pp. 1951-1953
    • Crabbe, L.1    Verdun, R.E.2    Haggblom, C.I.3    Karlseder, J.4
  • 12
    • 1842683257 scopus 로고    scopus 로고
    • T-loops and the origin of telomeres
    • DOI 10.1038/nrm1359
    • de Lange T (2004). T-loops and the origin of telomeres. Nat Rev Mol Cell Biol 5: 323-329. (Pubitemid 38480613)
    • (2004) Nature Reviews Molecular Cell Biology , vol.5 , Issue.4 , pp. 323-329
    • De Lange, T.1
  • 13
    • 24944460598 scopus 로고    scopus 로고
    • Shelterin: The protein complex that shapes and safeguards human telomeres
    • DOI 10.1101/gad.1346005
    • de Lange T (2005). Shelterin: the protein complex that shapes and safeguards human telomeres. Genes Dev 19: 2100-2110. (Pubitemid 41330312)
    • (2005) Genes and Development , vol.19 , Issue.18 , pp. 2100-2110
    • De Lange, T.1
  • 14
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver 3.0 An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinformatics Online 1: 47-50.
    • (2005) Evol Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 15
    • 34447120219 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Dominant markers and null alleles
    • DOI 10.1111/j.1471-8286.2007.01758.x
    • Falush D, Stephens M, Pritchard J (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7: 574-578. (Pubitemid 47035522)
    • (2007) Molecular Ecology Notes , vol.7 , Issue.4 , pp. 574-578
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 19
    • 58549117084 scopus 로고    scopus 로고
    • Genetics and the understanding of selection
    • Hurst L (2009). Genetics and the understanding of selection. Nat Rev Genet 10: 83-93.
    • (2009) Nat Rev Genet , vol.10 , pp. 83-93
    • Hurst, L.1
  • 21
    • 66749114836 scopus 로고    scopus 로고
    • Common genetic variants on 5p15.33 contribute to risk of lung adenocarcinoma in a Chinese population
    • Jin G, Xu L, Shu Y, Tian T, Liang J, Xu Y et al. (2009). Common genetic variants on 5p15.33 contribute to risk of lung adenocarcinoma in a Chinese population. Carcinogenesis 30: 987-990.
    • (2009) Carcinogenesis , vol.30 , pp. 987-990
    • Jin, G.1    Xu, L.2    Shu, Y.3    Tian, T.4    Liang, J.5    Xu, Y.6
  • 22
    • 0345687981 scopus 로고    scopus 로고
    • Composition and conservation of the telomeric complex
    • DOI 10.1007/s00018-003-3245-y
    • Kanoh J, Ishikawa F (2003). Composition and conservation of the telomeric complex. Cell Mol Life Sci 60: 2295-2302. (Pubitemid 37487251)
    • (2003) Cellular and Molecular Life Sciences , vol.60 , Issue.11 , pp. 2295-2302
    • Kanoh, J.1    Ishikawa, F.2
  • 23
    • 34548046468 scopus 로고    scopus 로고
    • Patterns of population differentiation of candidate genes for cardiovascular disease
    • Kullo I, Ding K (2007). Patterns of population differentiation of candidate genes for cardiovascular disease. BMC Genetics 8: 48.
    • (2007) BMC Genetics , vol.8 , pp. 48
    • Kullo, I.1    Ding, K.2
  • 25
    • 72149129508 scopus 로고    scopus 로고
    • A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma
    • Landi M, Chatterjee N, Yu K, Goldin L, Goldstein A, Rotunno M et al. (2009). A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma. Am J Hum Genet 85: 679-691.
    • (2009) Am J Hum Genet , vol.85 , pp. 679-691
    • Landi, M.1    Chatterjee, N.2    Yu, K.3    Goldin, L.4    Goldstein, A.5    Rotunno, M.6
  • 26
    • 0034716904 scopus 로고    scopus 로고
    • Identification of human Rap1: Implications for telomere evolution
    • Li B, Oestreich S, de Lange T (2000). Identification of human Rap1: implications for telomere evolution. Cell 101: 471-483.
    • (2000) Cell , vol.101 , pp. 471-483
    • Li, B.1    Oestreich, S.2    De Lange, T.3
  • 29
    • 67651183852 scopus 로고    scopus 로고
    • The association between leukocyte telomere length and cigarette smoking, dietary and physical variables, and risk of prostate cancer
    • Mirabello L, Huang W, Wong J, Chatterjee N, Reding D, Crawford E et al. (2009). The association between leukocyte telomere length and cigarette smoking, dietary and physical variables, and risk of prostate cancer. Aging Cell 8: 405-413.
    • (2009) Aging Cell , vol.8 , pp. 405-413
    • Mirabello, L.1    Huang, W.2    Wong, J.3    Chatterjee, N.4    Reding, D.5    Crawford, E.6
  • 30
    • 34347257427 scopus 로고    scopus 로고
    • The human telomere and its relationship to human disease, therapy, and tissue engineering
    • Moon I, Jarstfer M (2007). The human telomere and its relationship to human disease, therapy, and tissue engineering. Front Biosci 12: 4595-4620.
    • (2007) Front Biosci , vol.12 , pp. 4595-4620
    • Moon, I.1    Jarstfer, M.2
  • 33
    • 0032489351 scopus 로고    scopus 로고
    • Reversing time: Origin of telomerase
    • DOI 10.1016/S0092-8674(00)81123-X
    • Nakamura T, Cech T (1998). Reversing time: Origin of telomerase. Cell 92: 587-590. (Pubitemid 28141505)
    • (1998) Cell , vol.92 , Issue.5 , pp. 587-590
    • Nakamura, T.M.1    Cech, T.R.2
  • 34
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • DOI 10.1146/annurev.genet.39.073003.112420
    • Nielsen R (2005). Molecular signatures of natural selection. Annu Rev Genet 39: 197-218. (Pubitemid 43011113)
    • (2005) Annual Review of Genetics , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 35
    • 77649188501 scopus 로고    scopus 로고
    • A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33
    • Petersen G, Amundadottir L, Fuchs C, Kraft P, Stolzenberg-Solomon R, Jacobs K et al. (2010). A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33. Nat Genet 42: 224-228.
    • (2010) Nat Genet , vol.42 , pp. 224-228
    • Petersen, G.1    Amundadottir, L.2    Fuchs, C.3    Kraft, P.4    Stolzenberg-Solomon, R.5    Jacobs, K.6
  • 36
    • 3042780966 scopus 로고    scopus 로고
    • Hepatocellular telomere shortening correlates with chromosomal instability and the development of human hepatoma
    • DOI 10.1002/hep.20271
    • Plentz R, Caselitz M, Bleck J, Gebel M, Flemming P, Kubicka S et al. (2004). Hepatocellular telomere shortening correlates with chromosomal instability and the development of human hepatoma. Hepatology 40: 80-86. (Pubitemid 38868926)
    • (2004) Hepatology , vol.40 , Issue.1 , pp. 80-86
    • Plentz, R.R.1    Caselitz, M.2    Bleck, J.S.3    Gebel, M.4    Flemming, P.5    Kubicka, S.6    Manns, M.P.7    Rudolph, K.L.8
  • 37
    • 0042887525 scopus 로고    scopus 로고
    • Telomere shortening of epithelial cells characterises the adenoma-carcinoma transition of human colorectal cancer
    • DOI 10.1136/gut.52.9.1304
    • Plentz R,Wiemann S, Flemming P, Meier P, Kubicka S, Kreipe H et al. (2003). Telomere shortening of epithelial cells characterises the adenoma-carcinoma transition of human colorectal cancer. Gut 52: 1304-1307. (Pubitemid 37026463)
    • (2003) Gut , vol.52 , Issue.9 , pp. 1304-1307
    • Plentz, R.R.1    Wiemann, S.U.2    Flemming, P.3    Meier, P.N.4    Kubicka, S.5    Kreipe, H.6    Manns, M.P.7    Rudolph, K.L.8
  • 38
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 39
    • 14744280512 scopus 로고    scopus 로고
    • Geography predicts neutral genetic diversity of human populations [1]
    • DOI 10.1016/j.cub.2005.02.038
    • Prugnolle F, Manica A, Balloux F (2005). Geography predicts neutral genetic diversity of human populations. Curr Biol 15: R159-R160. (Pubitemid 40323514)
    • (2005) Current Biology , vol.15 , Issue.5
    • Prugnolle, F.1    Manica, A.2    Balloux, F.3
  • 43
    • 33749575795 scopus 로고    scopus 로고
    • Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives
    • DOI 10.1111/j.1469-1809.2006.00285.x
    • Rosenberg N (2006). Standardized subsets of the HGDP-CEPH human genome diversity cell line panel, accounting for atypical and duplicated samples and pairs of close relatives. Ann Hum Genet 70: 841-847. (Pubitemid 44530648)
    • (2006) Annals of Human Genetics , vol.70 , Issue.6 , pp. 841-847
    • Rosenberg, N.A.1
  • 46
    • 0034978564 scopus 로고    scopus 로고
    • Telomere dysfunction and evolution of intestinal carcinoma in mice and humans
    • DOI 10.1038/88871
    • Rudolph K, Millard M, Bosenberg M, DePinho R (2001). Telomere dysfunction and evolution of intestinal carcinoma in mice and humans. Nat Genet 28: 155-159. (Pubitemid 32538061)
    • (2001) Nature Genetics , vol.28 , Issue.2 , pp. 155-159
    • Rudolph, K.L.1    Millard, M.2    Bosenberg, M.W.3    DePinho, R.A.4
  • 50
    • 25444519739 scopus 로고    scopus 로고
    • Genetic variation, nucleotide diversity, and linkage disequilibrium in seven telomere stability genes suggest that these genes may be under constraint
    • DOI 10.1002/humu.20226
    • Savage S, Stewart B, Eckert A, Kiley M, Liao J, Chanock S (2005). Genetic variation, nucleotide diversity, and linkage disequilibrium in seven telomere stability genes suggest that these genes may be under constraint. Hum Mutat 26: 343-350. (Pubitemid 41361802)
    • (2005) Human Mutation , vol.26 , Issue.4 , pp. 343-350
    • Savage, S.A.1    Stewart, B.J.2    Eckert, A.3    Kiley, M.4    Liao, J.S.5    Chanock, S.J.6
  • 52
    • 14844285310 scopus 로고    scopus 로고
    • The genomic distribution of population substructure in four populations using 8525 autosomal SNPs
    • Shriver M, Kennedy G, Parra E, Lawson H, Sonpar V, Huang J et al. (2004). The genomic distribution of population substructure in four populations using 8525 autosomal SNPs. Hum Genomics 1: 274-286.
    • (2004) Hum Genomics , vol.1 , pp. 274-286
    • Shriver, M.1    Kennedy, G.2    Parra, E.3    Lawson, H.4    Sonpar, V.5    Huang, J.6
  • 53
    • 24044444786 scopus 로고    scopus 로고
    • Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation
    • Shriver M, Mei R, Parra E, Sonpar V, Halder I, Tishkoff S et al. (2005). Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation. Hum Genomics 2: 81-89.
    • (2005) Hum Genomics , vol.2 , pp. 81-89
    • Shriver, M.1    Mei, R.2    Parra, E.3    Sonpar, V.4    Halder, I.5    Tishkoff, S.6
  • 54
    • 55049127580 scopus 로고    scopus 로고
    • Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits
    • Stacey S, Gudbjartsson D, Sulem P, Bergthorsson J, Kumar R, Thorleifsson G et al. (2008). Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits. Nat Genet 40: 1313-1318.
    • (2008) Nat Genet , vol.40 , pp. 1313-1318
    • Stacey, S.1    Gudbjartsson, D.2    Sulem, P.3    Bergthorsson, J.4    Kumar, R.5    Thorleifsson, G.6
  • 56
    • 13844270527 scopus 로고    scopus 로고
    • Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
    • DOI 10.1086/428594
    • Stephens M, Scheet P (2005). Accounting for decay of linkage disequilibrium in haplotype inference and missing data imputation. Am J Hum Genet 76: 449-462. (Pubitemid 40250525)
    • (2005) American Journal of Human Genetics , vol.76 , Issue.3 , pp. 449-462
    • Stephens, M.1    Scheet, P.2
  • 57
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • DOI 10.1086/319501
    • Stephens M, Smith N, Donnelly P (2001). A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68: 978-989. (Pubitemid 32289743)
    • (2001) American Journal of Human Genetics , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 58
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. (Pubitemid 19274682)
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 59
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 60
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Consortium (2003). The International HapMap Project. Nature 426: 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 61
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International Hapmap Consortium T.
    • The International HapMap Consortium (2005). A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 62
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • International Hapmap Consortium T.
    • The International HapMap Consortium (2007). A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-862.
    • (2007) Nature , vol.449 , pp. 851-862
  • 63
    • 77954144031 scopus 로고    scopus 로고
    • Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer
    • Turnbull C, Rapley E, Seal S, Pernet D, Renwick A, Hughes D et al. (2010). Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer. Nat Genet 42: 604-607.
    • (2010) Nat Genet , vol.42 , pp. 604-607
    • Turnbull, C.1    Rapley, E.2    Seal, S.3    Pernet, D.4    Renwick, A.5    Hughes, D.6
  • 65
    • 0036629255 scopus 로고    scopus 로고
    • Oxidative stress shortens telomeres
    • DOI 10.1016/S0968-0004(02)02110-2, PII S0968000402021102
    • von Zglinicki T (2002). Oxidative stress shortens telomeres. Trends Biochem Sci 27: 339-344. (Pubitemid 34756516)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.7 , pp. 339-344
    • Von Zglinicki, T.1
  • 67
    • 33644522070 scopus 로고    scopus 로고
    • Searching for signals of evolutionary selection in 168 genes related to immune function
    • Walsh E, Sabeti P, Hutcheson H, Fry B, Schaffner S, de Bakker P et al. (2006). Searching for signals of evolutionary selection in 168 genes related to immune function. Hum Genet 119: 92-102.
    • (2006) Hum Genet , vol.119 , pp. 92-102
    • Walsh, E.1    Sabeti, P.2    Hutcheson, H.3    Fry, B.4    Schaffner, S.5    De Bakker, P.6
  • 68
    • 27544501017 scopus 로고    scopus 로고
    • Measures of human population structure show heterogeneity among genomic regions
    • DOI 10.1101/gr.4398405
    • Weir B, Cardon L, Anderson A, Nielsen D, Hill W (2005). Measures of human population structure show heterogeneity among genomic regions. Genome Res 15: 1468-1476. (Pubitemid 41545000)
    • (2005) Genome Research , vol.15 , Issue.11 , pp. 1468-1476
    • Weir, B.S.1    Cardon, L.R.2    Anderson, A.D.3    Nielsen, D.M.4    Hill, W.G.5
  • 70
    • 0141763835 scopus 로고    scopus 로고
    • Telomere maintenance and disease
    • DOI 10.1016/S0140-6736(03)14369-3
    • Wong J, Collins K (2003). Telomere maintenance and disease. Lancet 362: 983-988. (Pubitemid 37159296)
    • (2003) Lancet , vol.362 , Issue.9388 , pp. 983-988
    • Wong, J.M.Y.1    Collins, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.