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Volumn 12, Issue 12, 2002, Pages 1805-1814

Interrogating a high-density SNP map for signitures of natural selection

Author keywords

[No Author keywords available]

Indexed keywords

CALCULATION; CHROMOSOME; DEMOGRAPHY; GENE; GENE FREQUENCY; GENE IDENTIFICATION; GENE LOCUS; GENETIC VARIABILITY; GENOME; HUMAN; HYPOTHESIS; MEDICAL RESEARCH; NATURAL SELECTION; POPULATION GENETICS; PRIORITY JOURNAL; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS; STATISTICAL SIGNIFICANCE;

EID: 0036911353     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.631202     Document Type: Review
Times cited : (743)

References (59)
  • 1
    • 0034981387 scopus 로고    scopus 로고
    • The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures
    • Akey, J.M., Zhang, K., Xiong, M., Doris, P., and Jin, L. 2001. The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am. J. Hum. Genet. 68: 1447-1456.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 1447-1456
    • Akey, J.M.1    Zhang, K.2    Xiong, M.3    Doris, P.4    Jin, L.5
  • 3
    • 0035546073 scopus 로고    scopus 로고
    • Adaptive hitchhiking effects on genome variability
    • Andolfatto, P. 2001. Adaptive hitchhiking effects on genome variability. Curr. Opin. Genet. Dev. 11: 635-641.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 635-641
    • Andolfatto, P.1
  • 4
    • 0035546072 scopus 로고    scopus 로고
    • Genome-wide variation in the human and fruitfly: A comparison
    • Aquadro, C.F., Bauer DuMont, V., and Reed, F.A. 2001. Genome-wide variation in the human and fruitfly: A comparison. Curr. Opin. Genet. Dev. 1: 627-634.
    • (2001) Curr. Opin. Genet. Dev. , vol.1 , pp. 627-634
    • Aquadro, C.F.1    Bauer DuMont, V.2    Reed, F.A.3
  • 6
    • 0036187509 scopus 로고    scopus 로고
    • Natural selection on the erythrocyte surface
    • Baum, J., Ward, R.H., and Conway, D.J. 2002. Natural selection on the erythrocyte surface. Mol. Biol. Evol. 19: 223-229.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 223-229
    • Baum, J.1    Ward, R.H.2    Conway, D.J.3
  • 7
    • 0030467524 scopus 로고    scopus 로고
    • Evaluating loci for use in the genetic analysis of population structure
    • Beaumont, M. and Nichols, R.A. 1996. Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B Biol. Sci. 263: 1619-1626.
    • (1996) Proc. R. Soc. Lond. B Biol. Sci. , vol.263 , pp. 1619-1626
    • Beaumont, M.1    Nichols, R.A.2
  • 8
    • 0035045933 scopus 로고    scopus 로고
    • Population genomics: Genome-wide sampling of insect populations
    • Black IV, W.C., Baer, C.F., Antolin, M.F., and DuTeau, N.M. 2001. Population genomics: Genome-wide sampling of insect populations. Annu. Rev. Entomol. 46: 441-469.
    • (2001) Annu. Rev. Entomol. , vol.46 , pp. 441-469
    • Black W.C. IV1    Baer, C.F.2    Antolin, M.F.3    DuTeau, N.M.4
  • 11
    • 0036139250 scopus 로고    scopus 로고
    • Molecular analysis of the β-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the β(S) Senegal mutation
    • Currat, M., Trabuchet, G., Rees, D., Perrin, P., Harding, R.M., Clegg, J.B., Langaney, A., and Excoffier, L. 2002. Molecular analysis of the β-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the β(S) Senegal mutation. Am. J. Hum. Genet. 70: 207-223.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 207-223
    • Currat, M.1    Trabuchet, G.2    Rees, D.3    Perrin, P.4    Harding, R.M.5    Clegg, J.B.6    Langaney, A.7    Excoffier, L.8
  • 13
    • 0033815184 scopus 로고    scopus 로고
    • An analysis of strategies for discovery of single-nucleotide polymorphisms
    • Eberle, M.A. and Kruglyak, L. 2000. An analysis of strategies for discovery of single-nucleotide polymorphisms. Genet. Epidemiol. 19: S29-S35.
    • (2000) Genet. Epidemiol. , vol.19
    • Eberle, M.A.1    Kruglyak, L.2
  • 14
    • 0034491799 scopus 로고    scopus 로고
    • SIMCOAL: A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography
    • Excoffier L., Novembre J., and Schneider, S. 2000. SIMCOAL: A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography. J. Hered. 91: 506-509.
    • (2000) J. Hered. , vol.91 , pp. 506-509
    • Excoffier, L.1    Novembre, J.2    Schneider, S.3
  • 15
    • 0035546129 scopus 로고    scopus 로고
    • The neutral theory in the genomic era
    • Fay, J.C. and Wu, C.I. 2001. The neutral theory in the genomic era. Curr. Opin. Genet. Dev. 11: 642-646.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 642-646
    • Fay, J.C.1    Wu, C.I.2
  • 16
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • Fay, J.C., Wyckoff, G.J., and Wu, C.I. 2001. Positive and negative selection on the human genome. Genetics 158: 1227-1234.
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 17
    • 0033180294 scopus 로고    scopus 로고
    • Coalescing into the 21st century: An overview and prospects of coalescent theory
    • Fu, Y.X. and Li, W.H. 1999. Coalescing into the 21st century: An overview and prospects of coalescent theory. Theor. Popul. Biol. 56: 1-10.
    • (1999) Theor. Popul. Biol. , vol.56 , pp. 1-10
    • Fu, Y.X.1    Li, W.H.2
  • 19
    • 0037154208 scopus 로고    scopus 로고
    • Evidence for positive selection and population structure at the human MAO-A gene
    • Gilad, Y., Rosenberg, S., Przeworski, M., Lancet, D., and Skorecki, K. 2002. Evidence for positive selection and population structure at the human MAO-A gene. Proc. Natl. Acad. Sci. 99: 862-867.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 862-867
    • Gilad, Y.1    Rosenberg, S.2    Przeworski, M.3    Lancet, D.4    Skorecki, K.5
  • 20
    • 0036403773 scopus 로고    scopus 로고
    • Human migrations and population structure: What we know and why it matters
    • Goldstein, D.B. and Chikhi, L. 2002. Human migrations and population structure: What we know and why it matters. Annu. Rev. Genomics Hum. Genet. 3: 129-152.
    • (2002) Annu. Rev. Genomics Hum. Genet. , vol.3 , pp. 129-152
    • Goldstein, D.B.1    Chikhi, L.2
  • 21
    • 0036157464 scopus 로고    scopus 로고
    • Complex signatures of natural selection at the Duffy blood group locus
    • Hamblin, M.T., Thompson, E.E., and Di Rienzo, A. 2002. Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet. 70: 369-383.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 369-383
    • Hamblin, M.T.1    Thompson, E.E.2    Di Rienzo, A.3
  • 24
    • 0035252561 scopus 로고    scopus 로고
    • Evidence for purifying selection acting on silent sites in BRCA1
    • Hurst, L.D. and Pal, C. 2001. Evidence for purifying selection acting on silent sites in BRCA1. Trends Genet. 17: 62-65.
    • (2001) Trends Genet. , vol.17 , pp. 62-65
    • Hurst, L.D.1    Pal, C.2
  • 26
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A.J., Kauppi, L., and Neumann, R. 2001. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
    • (2001) Nat. Genet. , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 27
    • 0033278643 scopus 로고    scopus 로고
    • Evolution of Rh blood group genes have experienced gene conversions and positive selection
    • Kitano, T. and Saitou, N. 1999. Evolution of Rh blood group genes have experienced gene conversions and positive selection. J. Mol. Evol. 49: 615-626.
    • (1999) J. Mol. Evol. , vol.49 , pp. 615-626
    • Kitano, T.1    Saitou, N.2
  • 28
    • 0034972749 scopus 로고    scopus 로고
    • Contrasting patterns of polymorphisms at the ABO-secretor gene (FUT2) and plasma α(1,3)fucosyltransferase gene (FUT6) in human populations
    • Koda, Y., Tachida, H., Pang, H., Liu, Y., Soejima, M., Ghaderi, A.A., Takenaka, O., and Kimura, H. 2001. Contrasting patterns of polymorphisms at the ABO-secretor gene (FUT2) and plasma α(1,3)fucosyltransferase gene (FUT6) in human populations. Genetics 158: 747-756.
    • (2001) Genetics , vol.158 , pp. 747-756
    • Koda, Y.1    Tachida, H.2    Pang, H.3    Liu, Y.4    Soejima, M.5    Ghaderi, A.A.6    Takenaka, O.7    Kimura, H.8
  • 29
    • 0033832928 scopus 로고    scopus 로고
    • Usefulness of single nucleotide polymorphism data for estimating population parameters
    • Kuhner, M.K., Beerli, P., Yamato, J., and Felsenstein, J. 2000. Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics 156: 439-447.
    • (2000) Genetics , vol.156 , pp. 439-447
    • Kuhner, M.K.1    Beerli, P.2    Yamato, J.3    Felsenstein, J.4
  • 30
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin, R.C. and Krakauer, J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74: 175-195.
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 31
    • 0031594157 scopus 로고    scopus 로고
    • Factor V Q506 mutation (activated protein C resistance) associated with reduced intrapartum blood loss: A possible evolutionary selection mechanism
    • Lindqvist, P.G., Svensson, P.J., Dahlback, B., and Marsal, K. 1998. Factor V Q506 mutation (activated protein C resistance) associated with reduced intrapartum blood loss: A possible evolutionary selection mechanism. Thromb. Haemost. 79: 69-73.
    • (1998) Thromb. Haemost. , vol.79 , pp. 69-73
    • Lindqvist, P.G.1    Svensson, P.J.2    Dahlback, B.3    Marsal, K.4
  • 32
    • 0344931878 scopus 로고    scopus 로고
    • Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity
    • Majewski, J. and Cohan, F.M. 1999. Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity. Genetics 152: 1459-1474.
    • (1999) Genetics , vol.152 , pp. 1459-1474
    • Majewski, J.1    Cohan, F.M.2
  • 34
    • 0034744361 scopus 로고    scopus 로고
    • How selection shapes variation of the human major histocompatibility complex: A review
    • Meyer, D. and Thomson, G. 2001. How selection shapes variation of the human major histocompatibility complex: A review. Ann. Hum. Genet 65: 1-26.
    • (2001) Ann. Hum. Genet. , vol.65 , pp. 1-26
    • Meyer, D.1    Thomson, G.2
  • 35
    • 0004275709 scopus 로고
    • Molecular evolutionary genetics
    • Columbia University Press, New York, NY
    • Nei, M. 1990. Molecular evolutionary genetics. Columbia University Press, New York, NY.
    • (1990)
    • Nei, M.1
  • 36
    • 0033965571 scopus 로고    scopus 로고
    • Estimation of population parameters and recombination rates from single nucleotide polymorphisms
    • Nielsen, R. 2000. Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154: 931-942.
    • (2000) Genetics , vol.154 , pp. 931-942
    • Nielsen, R.1
  • 37
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • Nielsen, R. 2001. Statistical tests of selective neutrality in the age of genomics. Heredity 86: 641-647.
    • (2001) Heredity , vol.86 , pp. 641-647
    • Nielsen, R.1
  • 38
    • 0014569408 scopus 로고
    • Linkage disequilibrium at steady state determined by random genetic drift and recurrent mutation
    • Ohta, T. and Kimura, M. 1969. Linkage disequilibrium at steady state determined by random genetic drift and recurrent mutation. Genetics 69: 229-238.
    • (1969) Genetics , vol.69 , pp. 229-238
    • Ohta, T.1    Kimura, M.2
  • 39
    • 0034564988 scopus 로고    scopus 로고
    • Detecting the form of selection from DNA sequence data
    • Otto, S.P. 2000. Detecting the form of selection from DNA sequence data. Trends Genet. 16: 526-529.
    • (2000) Trends Genet. , vol.16 , pp. 526-529
    • Otto, S.P.1
  • 43
    • 0034527213 scopus 로고    scopus 로고
    • Evolution of balanced genetic polymorphism
    • Richman, A. 2000. Evolution of balanced genetic polymorphism. Mol. Ecol. 9: 1953-1963.
    • (2000) Mol. Ecol. , vol.9 , pp. 1953-1963
    • Richman, A.1
  • 44
    • 0035458416 scopus 로고    scopus 로고
    • Racially defined haplotype project debated
    • Robertson, D. 2001. Racially defined haplotype project debated. Nat. Biotechnol. 19: 795-796.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 795-796
    • Robertson, D.1
  • 46
    • 0034976976 scopus 로고    scopus 로고
    • The use of intraallelic variability for testing neutrality and estimating population growth rate
    • Slatkin, M. and Bertorelle, G. 2001. The use of intraallelic variability for testing neutrality and estimating population growth rate. Genetics 158: 865-874.
    • (2001) Genetics , vol.158 , pp. 865-874
    • Slatkin, M.1    Bertorelle, G.2
  • 47
    • 0031825318 scopus 로고    scopus 로고
    • Genetic hitch-hiking in a subdivided population
    • Slatkin, M. and Wiehe, T. 1998. Genetic hitch-hiking in a subdivided population. Genet. Res. 71: 155-160.
    • (1998) Genet. Res. , vol.71 , pp. 155-160
    • Slatkin, M.1    Wiehe, T.2
  • 48
    • 0035964091 scopus 로고    scopus 로고
    • The coreceptor mutation CCR5Δ32 influences the dynamics of HIV epidemics and is selected for by HIV
    • Sullivan, A.D., Wigginton, J., and Kirschner, D. 2001. The coreceptor mutation CCR5Δ32 influences the dynamics of HIV epidemics and is selected for by HIV. Proc. Natl. Acad. Sci. 98: 10214-10219.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 10214-10219
    • Sullivan, A.D.1    Wigginton, J.2    Kirschner, D.3
  • 49
    • 0034255419 scopus 로고    scopus 로고
    • SNP frequencies in human genes an excess of rare alleles and differing modes of selection
    • Sunyaev, S.R., Lathe III, W.C., Ramensky, V.E., and Bork, P. 2000. SNP frequencies in human genes an excess of rare alleles and differing modes of selection. Trends Genet. 16: 335-337.
    • (2000) Trends Genet. , vol.16 , pp. 335-337
    • Sunyaev, S.R.1    Lathe W.C. III2    Ramensky, V.E.3    Bork, P.4
  • 50
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima, F. 1989. The effect of change in population size on DNA polymorphism. Genetics 123: 597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 53
    • 0034856602 scopus 로고    scopus 로고
    • Interpretation of variation across marker loci as evidence of selection
    • Vitalis, R., Dawson, K., and Boursot, P. 2001. Interpretation of variation across marker loci as evidence of selection. Genetics 158: 1811-1823.
    • (2001) Genetics , vol.158 , pp. 1811-1823
    • Vitalis, R.1    Dawson, K.2    Boursot, P.3
  • 54
    • 0035205317 scopus 로고    scopus 로고
    • The discovery of single-nucleotide polymorphisms and inferences about human demographic history
    • Wakeley, J., Nielsen, R., Liu-Cordero, S.N., and Ardlie K. 2001. The discovery of single-nucleotide polymorphisms and inferences about human demographic history. Am. J. Hum. Genet. 69: 1332-1347.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1332-1347
    • Wakeley, J.1    Nielsen, R.2    Liu-Cordero, S.N.3    Ardlie, K.4
  • 55
    • 0012145281 scopus 로고    scopus 로고
    • Population substructure
    • Sinauer Associates, Sunderland, MA
    • Weir, B.S. 1996. Population substructure. Genetic data analysis II, pp. 161-173. Sinauer Associates, Sunderland, MA.
    • (1996) Genetic Data Analysis II , pp. 161-173
    • Weir, B.S.1
  • 56
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B.S. and Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 57
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S. 1951. The genetical structure of populations. Ann. Eugen. 15: 323-354.
    • (1951) Ann. Eugen. , vol.15 , pp. 323-354
    • Wright, S.1
  • 59
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan: An integration platform for the signature-recognition methods in InterPro
    • Zdobnov, E.M. and Apweiler, R. 2001. InterProScan: An integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2


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