-
1
-
-
0035141969
-
B of Bacillus subtilis
-
DOI 10.1128/JB.183.4.1329-1338.2001
-
Akbar S, Gaidenko TA, Kang CM, O'Reilly M, Devine KM, Price CW. 2001. New family of regulators in the environmental signaling pathway which activates the general stress transcription factor sigma(B) of Bacillus subtilis. J. Bacteriol. 183:1329-38 (Pubitemid 32107729)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.4
, pp. 1329-1338
-
-
Akbar, S.1
Gaidenko, T.A.2
Min Kang, C.3
O'Reilly, M.4
Devine, K.M.5
Price, C.W.6
-
2
-
-
0036774056
-
Structure and interactions of PAS Kinase N-terminal PAS domain: Model for intramolecular kinase regulation
-
DOI 10.1016/S0969-2126(02)00857-2, PII S0969212602008572
-
Amezcua CA, Harper SM, Rutter J, Gardner KH. 2002. Structure and interactions of PAS kinase Nterminal PAS domain: model for intramolecular kinase regulation. Structure 10:1349-61 (Pubitemid 35232384)
-
(2002)
Structure
, vol.10
, Issue.10
, pp. 1349-1361
-
-
Amezcua, C.A.1
Harper, S.M.2
Rutter, J.3
Gardner, K.H.4
-
3
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
DOI 10.1006/jmbi.2001.4508
-
Anantharaman V, Koonin EV, Aravind L. 2001. Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J. Mol. Biol. 307:1271-92 (Pubitemid 33027639)
-
(2001)
Journal of Molecular Biology
, vol.307
, Issue.5
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
5
-
-
0030712081
-
The GAF domain: An evolutionary link between diverse phototransducing proteins
-
DOI 10.1016/S0968-0004(97)01148-1, PII S0968000497011481
-
Aravind L, Ponting CP. 1997. The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem. Sci. 22:458-59 (Pubitemid 27515909)
-
(1997)
Trends in Biochemical Sciences
, vol.22
, Issue.12
, pp. 458-459
-
-
Aravind, L.1
Ponting, C.P.2
-
6
-
-
33749021097
-
B-dependent stress response of Bacillus subtilis via YtvA
-
DOI 10.1128/JB.00716-06
-
Avila-PerezM,Hellingwerf KJ, Kort R. 2006. Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA. J. Bacteriol. 188:6411-14 (Pubitemid 44448584)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.17
, pp. 6411-6414
-
-
Avila-Perez, M.1
Hellingwerf, K.J.2
Kort, R.3
-
7
-
-
0028577744
-
Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
-
Baca M, Borgstahl GE, BoissinotM, Burke PM,Williams DR, et al. 1994. Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry. Biochemistry 33:14369-77
-
(1994)
Biochemistry
, vol.33
, pp. 14369-77
-
-
Baca, M.1
Borgstahl, G.E.2
Boissinot, M.3
Burke, P.M.4
Williams, D.R.5
-
8
-
-
38549164691
-
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2008. GenBank. Nucleic Acids Res. 36:25-30
-
(2008)
GenBank Nucleic Acids Res
, vol.36
, pp. 25-30
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
9
-
-
4344671750
-
Hypercyst mutants in Rhodospirillum centenum identify regulatory loci involved in cyst cell differentiation
-
DOI 10.1128/JB.186.17.5834-5841.2004
-
Berleman JE, Hasselbring BM, Bauer CE. 2004. Hypercyst mutants in Rhodospirillum centenum identify regulatory loci involved in cyst cell differentiation. J. Bacteriol. 186:5834-41 (Pubitemid 39128657)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.17
, pp. 5834-5841
-
-
Berleman, J.E.1
Hasselbring, B.M.2
Bauer, C.E.3
-
10
-
-
0033954256
-
The protein data bank
-
Berman HM,Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-42 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
11
-
-
0034705035
-
Domain organization and flavin adenine dinucleotide-binding determinants in the aerotaxis signal transducer Aer of Escherichia coli
-
DOI 10.1073/pnas.100118697
-
Bibikov SI, Barnes LA, Gitin Y, Parkinson JS. 2000. Domain organization and flavin adenine dinucleotide-binding determinants in the aerotaxis signal transducer Aer of Escherichia coli. Proc. Natl. Acad. Sci. USA 97:5830-35 (Pubitemid 30367484)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.11
, pp. 5830-5835
-
-
Bibikov, S.I.1
Barnes, L.A.2
Gitin, Y.3
Parkinson, J.S.4
-
12
-
-
0030925238
-
A signal transducer for aerotaxis in Escherichia coli
-
Bibikov SI, Biran R, Rudd KE, Parkinson JS. 1997. A signal transducer for aerotaxis in Escherichia coli. J. Bacteriol. 179:4075-79 (Pubitemid 27259934)
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.12
, pp. 4075-4079
-
-
Bibikov, S.I.1
Biran, R.2
Rudd, K.E.3
Parkinson, J.S.4
-
13
-
-
0029110488
-
1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore
-
BorgstahlGE, WilliamsDR, Getzoff ED. 1995. 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 34:6278-87
-
(1995)
Biochemistry
, vol.34
, pp. 6278-87
-
-
Borgstahl, G.E.1
Williams, D.R.2
Getzoff, E.D.3
-
14
-
-
0030893492
-
Anaerobic citrate metabolism and its regulation in enterobacteria
-
DOI 10.1007/s002030050419
-
Bott M. 1997. Anaerobic citrate metabolism and its regulation in enterobacteria. Arch.Microbiol. 167:78-88 (Pubitemid 27141756)
-
(1997)
Archives of Microbiology
, vol.167
, Issue.2-3
, pp. 78-88
-
-
Bott, M.1
-
15
-
-
77956090680
-
Probing the chemotaxis periplasmic sensor domains from Geobacter sulfurreducens by combined resonance Raman and molecular dynamic approaches: NO and CO sensing
-
Catarino T, Pessanha M, De Candia AG, Gouveia Z, Fernandes AP, et al. 2010. Probing the chemotaxis periplasmic sensor domains from Geobacter sulfurreducens by combined resonance Raman and molecular dynamic approaches: NO and CO sensing. J. Phys. Chem. B 114:11251-60
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 11251-60
-
-
Catarino, T.1
Pessanha, M.2
De Candia, A.G.3
Gouveia, Z.4
Fernandes, A.P.5
-
16
-
-
75749103345
-
Extracytoplasmic PAS-like domains are common in signal transduction proteins
-
Chang C, Tesar C, Gu M, Babnigg G, Joachimiak A, et al. 2010. Extracytoplasmic PAS-like domains are common in signal transduction proteins. J. Bacteriol. 192:1156-59
-
(2010)
J. Bacteriol.
, vol.192
, pp. 1156-59
-
-
Chang, C.1
Tesar, C.2
Gu, M.3
Babnigg, G.4
Joachimiak, A.5
-
17
-
-
17144394187
-
Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals
-
Chen M, Tao Y, Lim J, Shaw A, Chory J. 2005. Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. Curr. Biol. 15:637-42
-
(2005)
Curr. Biol.
, vol.15
, pp. 637-42
-
-
Chen, M.1
Tao, Y.2
Lim, J.3
Shaw, A.4
Chory, J.5
-
18
-
-
46649120154
-
Crystal structure of a functional dimer of the PhoQ sensor domain
-
Cheung J, Bingman CA, Reyngold M, HendricksonWA, Waldburger CD. 2008. Crystal structure of a functional dimer of the PhoQ sensor domain. J. Biol. Chem. 283:13762-70
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 13762-70
-
-
Cheung, J.1
Bingman, C.A.2
Reyngold, M.3
Hendrickson, W.A.4
Waldburger, C.D.5
-
19
-
-
77949918665
-
Sensor domains of two-component regulatory systems
-
Cheung J, HendricksonWA. 2010. Sensor domains of two-component regulatory systems. Curr. Opin. Microbiol. 13:116-23
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 116-23
-
-
Cheung, J.1
Hendrickson, W.A.2
-
20
-
-
32044465772
-
Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling
-
DOI 10.1016/j.jmb.2005.12.032, PII S0022283605015949
-
Cho US, Bader MW, Amaya MF, Daley ME, Klevit RE, et al. 2006. Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling. J. Mol. Biol. 356:1193-206 (Pubitemid 43199923)
-
(2006)
Journal of Molecular Biology
, vol.356
, Issue.5
, pp. 1193-1206
-
-
Cho, U.S.1
Bader, M.W.2
Amaya, M.F.3
Daley, M.E.4
Klevit, R.E.5
Miller, S.I.6
Xu, W.7
-
21
-
-
0032573502
-
Arabidopsis NPH1: A flavoprotein with the properties of a photoreceptor for phototropism
-
Christie JM, Reymond P, Powell GK, Bernasconi P, Raibekas AA, et al. 1998. Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism. Science 282:1698-701 (Pubitemid 28549283)
-
(1998)
Science
, vol.282
, Issue.5394
, pp. 1698-1701
-
-
Christie, J.M.1
Reymond, P.2
Powell, G.K.3
Bernasconi, P.4
Raibekas, A.A.5
Liscum, E.6
Briggs, W.R.7
-
22
-
-
0033587744
-
LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nphl): Binding sites for the chromophore flavin mononucleotide
-
DOI 10.1073/pnas.96.15.8779
-
Christie JM, Salomon M, Nozue K, Wada M, Briggs WR. 1999. LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide. Proc. Natl. Acad. Sci. USA 96:8779-83 (Pubitemid 29354868)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.15
, pp. 8779-8783
-
-
Christie, J.M.1
Salomon, M.2
Nozue, K.3
Wada, M.4
Briggs, W.R.5
-
23
-
-
20344374161
-
Conserved modular design of an oxygen sensory/signaling network with species-specific output
-
DOI 10.1073/pnas.0503022102
-
Crosson S,McGrath PT, Stephens C, McAdamsHH, Shapiro L. 2005. Conserved modular design of an oxygen sensory/signaling network with species-specific output. Proc. Natl. Acad. Sci. USA 102:8018-23 (Pubitemid 40781055)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.22
, pp. 8018-8023
-
-
Crosson, S.1
McGrath, P.T.2
Stephens, C.3
McAdams, H.H.4
Shapiro, L.5
-
25
-
-
0037435618
-
The LOV domain family: Photoresponsive signaling modules coupled to diverse output domains
-
DOI 10.1021/bi026978l
-
Crosson S, Rajagopal S, Moffat K. 2003. The LOV domain family: photoresponsive signaling modules coupled to diverse output domains. Biochemistry 42:2-10 (Pubitemid 36083846)
-
(2003)
Biochemistry
, vol.42
, Issue.1
, pp. 2-10
-
-
Crosson, S.1
Rajagopal, S.2
Moffat, K.3
-
26
-
-
0023731837
-
Cascade regulation of nif gene expression in Rhizobium meliloti
-
David M, Daveran ML, Batut J, Dedieu A, Domergue O, et al. 1988. Cascade regulation of nif gene expression in Rhizobium meliloti. Cell 54:671-83
-
(1988)
Cell
, vol.54
, pp. 671-83
-
-
David, M.1
Daveran, M.L.2
Batut, J.3
Dedieu, A.4
Domergue, O.5
-
27
-
-
0025196088
-
Rhizobium meliloti FixL is an oxygen sensor and regulates R. meliloti nifA and fixK genes differently in Escherichia coli
-
de Philip P, Batut J, Boistard P. 1990. Rhizobium meliloti FixL is an oxygen sensor and regulates R. meliloti nifA and fixK genes differently in Escherichia coli. J. Bacteriol. 172:4255-62 (Pubitemid 20236713)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.8
, pp. 4255-4262
-
-
De Philip, P.1
Batut, J.2
Boistard, P.3
-
28
-
-
0034646392
-
Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor
-
DOI 10.1021/bi991911s
-
Delgado-Nixon VM, Gonzalez G, Gilles-Gonzalez MA. 2000. Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor. Biochemistry 39:2685-91 (Pubitemid 30148922)
-
(2000)
Biochemistry
, vol.39
, Issue.10
, pp. 2685-2691
-
-
Delgado-Nixon, V.M.1
Gonzalez, G.2
Gilles-Gonzalez, M.-A.3
-
29
-
-
0031818761
-
Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria
-
DOI 10.1007/s002030050616
-
Dimroth P, Schink B. 1998. Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria. Arch. Microbiol. 170:69-77 (Pubitemid 28366023)
-
(1998)
Archives of Microbiology
, vol.170
, Issue.2
, pp. 69-77
-
-
Dimroth, P.1
Schink, B.2
-
30
-
-
32544436601
-
Multiple Alignment of protein structures and sequences for VMD
-
DOI 10.1093/bioinformatics/bti825
-
Eargle J, Wright D, Luthey-Schulten Z. 2006. Multiple alignment of protein structures and sequences for VMD. Bioinformatics 22:504-6 (Pubitemid 43231430)
-
(2006)
Bioinformatics
, vol.22
, Issue.4
, pp. 504-506
-
-
Eargle, J.1
Wright, D.2
Luthey-Schulten, Z.3
-
31
-
-
0035678319
-
Salmonella typhimurium outer membrane remodeling: Role in resistance to host innate immunity
-
DOI 10.1016/S1286-4579(01)01494-0
-
Ernst RK, Guina T,Miller SI. 2001. Salmonella typhimurium outer membrane remodeling: role in resistance to host innate immunity. Microbes Infect. 3:1327-34 (Pubitemid 34033769)
-
(2001)
Microbes and Infection
, vol.3
, Issue.14-15
, pp. 1327-1334
-
-
Ernst, R.K.1
Guina, T.2
Miller, S.I.3
-
32
-
-
63749110404
-
Control of Salmonella pathogenicity island-2 gene expression
-
Fass E, Groisman EA. 2009. Control of Salmonella pathogenicity island-2 gene expression. Curr. Opin. Microbiol. 12:199-204
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 199-204
-
-
Fass, E.1
Groisman, E.A.2
-
34
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-22
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
-
35
-
-
0028108941
-
Genetic regulation of nitrogen fixation in rhizobia
-
Fischer HM. 1994. Genetic regulation of nitrogen fixation in rhizobia. Microbiol. Rev. 58:352-86
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 352-86
-
-
Fischer, H.M.1
-
36
-
-
37049246982
-
Construction of phylogenetic trees
-
FitchWM, Margoliash E. 1967. Construction of phylogenetic trees. Science 155:279-84
-
(1967)
Science
, vol.155
, pp. 279-84
-
-
Fitch, W.M.1
Margoliash, E.2
-
37
-
-
2642554922
-
Bacterial signal transduction network in a genomic perspective
-
DOI 10.1111/j.1462-2920.2004.00633.x
-
Galperin MY. 2004. Bacterial signal transduction network in a genomic perspective. Environ. Microbiol. 6:552-67 (Pubitemid 38708690)
-
(2004)
Environmental Microbiology
, vol.6
, Issue.6
, pp. 552-567
-
-
Galperin, M.Y.1
-
38
-
-
0031019880
-
2+
-
DOI 10.1074/jbc.272.3.1440
-
Garcia-Vescovi E, Ayala YM, Di Cera E, Groisman EA. 1997. Characterization of the bacterial sensor protein PhoQ. Evidence for distinct binding sites for Mg2+ and Ca2+. J. Biol. Chem. 272:1440-43 (Pubitemid 27043217)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.3
, pp. 1440-1443
-
-
Vescovi, E.G.1
Ayala, Y.M.2
Cera, E.D.3
Groisman, E.A.4
-
39
-
-
0029671310
-
Mg2+ as an extracellular signal: Environmental regulation of Salmonella virulence
-
Garcia-Vescovi E, Soncini FC, Groisman EA. 1996. Mg2+ as an extracellular signal: environmental regulation of Salmonella virulence. Cell 84:165-74
-
(1996)
Cell
, vol.84
, pp. 165-74
-
-
Garcia-Vescovi, E.1
Soncini, F.C.2
Groisman, E.A.3
-
40
-
-
0025878267
-
A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti
-
Gilles-GonzalezMA, Ditta GS,Helinski DR. 1991. A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti. Nature 350:170-72 (Pubitemid 21912192)
-
(1991)
Nature
, vol.350
, Issue.6314
, pp. 170-172
-
-
Gilles-Gonzalez, M.A.1
Ditta, G.S.2
Helinski, D.R.3
-
41
-
-
0028241788
-
Heme-based sensors, exemplified by the kinase FixL, are a new class of heme protein with distinctive ligand binding and autoxidation
-
DOI 10.1021/bi00192a011
-
Gilles-Gonzalez MA, Gonzalez G, Perutz MF, Kiger L, Marden MC, Poyart C. 1994. Heme-based sensors, exemplified by the kinase FixL, are a new class of heme protein with distinctive ligand binding and autoxidation. Biochemistry 33:8067-73 (Pubitemid 24223828)
-
(1994)
Biochemistry
, vol.33
, Issue.26
, pp. 8067-8073
-
-
Gilles-Gonzalez, M.A.1
Gonzalez, G.2
Perutz, M.F.3
-
42
-
-
76249105901
-
A PAS domain binds asparagine in the chemotaxis receptor McpB in Bacillus subtilis
-
Glekas GD, Foster RM, Cates JR, Estrella JA, Wawrzyniak MJ, et al. 2010. A PAS domain binds asparagine in the chemotaxis receptor McpB in Bacillus subtilis. J. Biol. Chem. 285:1870-78
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 1870-78
-
-
Glekas, G.D.1
Foster, R.M.2
Cates, J.R.3
Estrella, J.A.4
Wawrzyniak, M.J.5
-
43
-
-
0033020794
-
4-Dicarboxylates in Escherichia coli
-
Golby P, Davies S, Kelly DJ, Guest JR, Andrews SC. 1999. Identification and characterization of a twocomponent sensor-kinase and response-regulator system (DcuS-DcuR) controlling gene expression in response to C4-dicarboxylates in Escherichia coli. J. Bacteriol. 181:1238-48 (Pubitemid 29119563)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.4
, pp. 1238-1248
-
-
Golby, P.1
Davies, S.2
Kelly, D.J.3
Guest, J.R.4
Andrews, S.C.5
-
44
-
-
0032438105
-
Structure of a biological oxygen sensor: A new mechanism for heme- driven signal transduction
-
DOI 10.1073/pnas.95.26.15177
-
Gong W, Hao B, Mansy SS, Gonzalez G, Gilles-Gonzalez MA, Chan MK. 1998. Structure of a biological oxygen sensor: a new mechanism for heme-driven signal transduction. Proc. Natl. Acad. Sci. USA 95:15177-82 (Pubitemid 29018672)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.26
, pp. 15177-15182
-
-
Gong, W.1
Hao, B.2
Mansy, S.S.3
Gonzalez, G.4
Gilles-Gonzalez, M.A.5
Chan, M.K.6
-
45
-
-
0035968198
-
A novel snare N-terminal domain revealed by the crystal structure of Sec22b
-
Gonzalez LC, Weis WI, Scheller RH. 2001. A novel snare N-terminal domain revealed by the crystal structure of Sec22b. J. Biol. Chem. 276:24203-11
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 24203-11
-
-
Gonzalez, L.C.1
Weis, W.I.2
Scheller, R.H.3
-
46
-
-
1642274684
-
The PAS fold: A redefinition of the PAS domain based upon structural prediction
-
DOI 10.1111/j.1432-1033.2004.04023.x
-
Hefti MH, Francoijs K-J, de Vries SC, Dixon R, Vervoort J. 2004. The PAS fold. A redefinition of the PAS domain based upon structural prediction. Eur. J. Biochem. 271:1198-208 (Pubitemid 38373052)
-
(2004)
European Journal of Biochemistry
, vol.271
, Issue.6
, pp. 1198-1208
-
-
Hefti, M.H.1
Francoijs, K.-J.2
De Vries, S.C.3
Dixon, R.4
Vervoort, J.5
-
47
-
-
4944243738
-
PAS domain of the Aer redox sensor requires C-terminal residues for native-fold formation and flavin adenine dinucleotide binding
-
DOI 10.1128/JB.186.20.6782-6791.2004
-
Herrmann S,Ma Q, Johnson MS, Repik AV, Taylor BL. 2004. PAS domain of the Aer redox sensor requires C-terminal residues for native-fold formation and flavin adenine dinucleotide binding. J. Bacteriol. 186:6782-91 (Pubitemid 39332116)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.20
, pp. 6782-6791
-
-
Herrmann, S.1
Ma, Q.2
Johnson, M.S.3
Repik, A.V.4
Taylor, B.L.5
-
48
-
-
0034676026
-
Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor
-
Ho YS, Burden LM, Hurley JH. 2000. Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor. EMBO J. 19:5288-99
-
(2000)
EMBO J.
, vol.19
, pp. 5288-99
-
-
Ho, Y.S.1
Burden, L.M.2
Hurley, J.H.3
-
49
-
-
0027940414
-
Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry
-
DOI 10.1021/bi00251a001
-
Hoff WD, Dux P, Hard K, Devreese B, Nugteren-Roodzant IM, et al. 1994. Thiol ester-linked pcoumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry. Biochemistry 33:13959-62 (Pubitemid 24382335)
-
(1994)
Biochemistry
, vol.33
, Issue.47
, pp. 13959-13962
-
-
Hoff, W.D.1
Dux, P.2
Hard, K.3
Devreese, B.4
Nugteren-Roodzant, I.M.5
Crielaard, W.6
Boelens, R.7
Kaptein, R.8
Van Beeumen, J.9
Hellingwerf, K.J.10
-
50
-
-
0027057526
-
A database of protein structure families with common folding motifs
-
Holm L, Ouzounis C, Sander C, Tuparev G, Vriend G. 1992. A database of protein structure families with common folding motifs. Protein Sci. 1:1691-98 (Pubitemid 23047485)
-
(1992)
Protein Science
, vol.1
, Issue.12
, pp. 1691-1698
-
-
Holm, L.1
Ouzounis, C.2
Sander, C.3
Tuparev, G.4
Vriend, G.5
-
51
-
-
31844444593
-
Interaction of pathogenic mycobacteria with the host immune system
-
DOI 10.1016/j.mib.2005.12.014, PII S1369527405002080, Host-Microbe Interactions: Bacteria
-
Houben EN, Nguyen L, Pieters J. 2006. Interaction of pathogenic mycobacteria with the host immune system. Curr. Opin. Microbiol. 9:76-85 (Pubitemid 43184340)
-
(2006)
Current Opinion in Microbiology
, vol.9
, Issue.1
, pp. 76-85
-
-
Houben, E.N.G.1
Nguyen, L.2
Pieters, J.3
-
52
-
-
0031470701
-
Arabidopsis NPH1: A protein kinase with a putative redox-sensing domain
-
DOI 10.1126/science.278.5346.2120
-
Huala E, Oeller PW, Liscum E, Han IS, Larsen E, Briggs WR. 1997. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science 278:2120-23 (Pubitemid 28028321)
-
(1997)
Science
, vol.278
, Issue.5346
, pp. 2120-2123
-
-
Huala, E.1
Oeller, P.W.2
Liscum, E.3
Han, I.-S.4
Larsen, E.5
Briggs, W.R.6
-
53
-
-
0027184569
-
PAS is a dimerization domain common to Drosophila period and several transcription factors
-
DOI 10.1038/364259a0
-
Huang ZJ, Edery I, Rosbash M. 1993. PAS is a dimerization domain common to Drosophila period and several transcription factors. Nature 364:259-62 (Pubitemid 23257088)
-
(1993)
Nature
, vol.364
, Issue.6434
, pp. 259-262
-
-
Zuoshi Josh Huang1
Edery, I.2
Rosbash, M.3
-
54
-
-
77955275743
-
Role of a PAS sensor domain in the Mycobacterium tuberculosis transcription regulator Rv1364c
-
Jaiswal RK, Manjeera G, Gopal B. 2010. Role of a PAS sensor domain in the Mycobacterium tuberculosis transcription regulator Rv1364c. Biochem. Biophys. Res. Commun. 398:342-49
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.398
, pp. 342-49
-
-
Jaiswal, R.K.1
Manjeera, G.2
Gopal, B.3
-
55
-
-
0037122935
-
C4-dicarboxylate carriers and sensors in bacteria
-
Janausch IG, Zientz E, Tran QH, Kroger A, Unden G. 2002. C4-dicarboxylate carriers and sensors in bacteria. Biochim. Biophys. Acta 1553:39-56
-
(2002)
Biochim. Biophys. Acta
, vol.1553
, pp. 39-56
-
-
Janausch, I.G.1
Zientz, E.2
Tran, Q.H.3
Kroger, A.4
Unden, G.5
-
56
-
-
0033575370
-
Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes
-
DOI 10.1126/science.285.5426.406
-
Jiang Z, Swem LR, Rushing BG, Devanathan S, Tollin G, Bauer CE. 1999. Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes. Science 285:406-9 (Pubitemid 29343962)
-
(1999)
Science
, vol.285
, Issue.5426
, pp. 406-409
-
-
Jiang, Z.1
Swem, L.R.2
Rushing, B.C.3
Devanathan, S.4
Tollin, G.5
Bauer, C.E.6
-
57
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protocols 4:363-71
-
(2009)
Nat. Protocols
, vol.4
, pp. 363-71
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
58
-
-
33947412138
-
Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: Signaling, dimerization, and mechanism
-
DOI 10.1021/bi0620407
-
Key J,Hefti M, Purcell EB, Moffat K. 2007. Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry 46:3614-23 (Pubitemid 46493462)
-
(2007)
Biochemistry
, vol.46
, Issue.12
, pp. 3614-3623
-
-
Key, J.1
Hefti, M.2
Purcell, E.B.3
Moffat, K.4
-
59
-
-
15444362702
-
Crystal structures of deoxy and CO-bound bjFixLH reveal details of ligand recognition and signaling
-
DOI 10.1021/bi047942r
-
Key J, Moffat K. 2005. Crystal structures of deoxy and CO-bound bjFixLH reveal details of ligand recognition and signaling. Biochemistry 44:4627-35 (Pubitemid 40396741)
-
(2005)
Biochemistry
, vol.44
, Issue.12
, pp. 4627-4635
-
-
Key, J.1
Moffat, K.2
-
60
-
-
72249095193
-
Principles of ligand binding within a completely buried cavity in HIF2alpha PAS-B
-
Key J, Scheuermann TH, Anderson PC, Daggett V, Gardner KH. 2009. Principles of ligand binding within a completely buried cavity in HIF2alpha PAS-B. J. Am. Chem. Soc. 131:17647-54
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17647-54
-
-
Key, J.1
Scheuermann, T.H.2
Anderson, P.C.3
Daggett, V.4
Gardner, K.H.5
-
61
-
-
78651257345
-
Structural characterization of the multi-domain regulatory protein Rv1364c from Mycobacterium tuberculosis
-
King-Scott J, Konarev PV, Panjikar S, Jordanova R, Svergun DI, Tucker PA. 2010. Structural characterization of the multi-domain regulatory protein Rv1364c from Mycobacterium tuberculosis. Structure 19:56-69
-
(2010)
Structure
, vol.19
, pp. 56-69
-
-
King-Scott, J.1
Konarev, P.V.2
Panjikar, S.3
Jordanova, R.4
Svergun, D.I.5
Tucker, P.A.6
-
62
-
-
34249785673
-
4-dicarboxylate- or citrate-specific sensor
-
DOI 10.1128/JB.00168-07
-
Kramer J, Fischer JD, Zientz E, Vijayan V, Griesinger C, et al. 2007. Citrate sensing by the C4- dicarboxylate/citrate sensor kinase DcuS of Escherichia coli: binding site and conversion of DcuS to a C4-dicarboxylate- or citrate-specific sensor. J. Bacteriol. 189:4290-98 (Pubitemid 46847377)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.11
, pp. 4290-4298
-
-
Kramer, J.1
Fischer, J.D.2
Zientz, E.3
Vijayan, V.4
Griesinger, C.5
Lupas, A.6
Unden, G.7
-
63
-
-
72249087161
-
Distribution and phylogeny of lightoxygen- voltage-blue-light-signaling proteins in the three kingdoms of life
-
Krauss U, Minh BQ, Losi A, Gärtner W, Eggert T, et al. 2009. Distribution and phylogeny of lightoxygen- voltage-blue-light-signaling proteins in the three kingdoms of life. J. Bacteriol. 191:7234-42
-
(2009)
J. Bacteriol.
, vol.191
, pp. 7234-42
-
-
Krauss, U.1
Minh, B.Q.2
Losi, A.3
Gärtner, W.4
Eggert, T.5
-
64
-
-
77957933198
-
Bacterial sensor kinases: Diversity in the recognition of environmental signals
-
Krell T, Lacal J, Busch A, Silva-Jimenez H, Guazzaroni M-E, Ramos JL. 2010. Bacterial sensor kinases: diversity in the recognition of environmental signals. Annu. Rev. Microbiol. 64:539-59
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 539-59
-
-
Krell, T.1
Lacal, J.2
Busch, A.3
Silva-Jimenez, H.4
Guazzaroni, M.-E.5
Ramos, J.L.6
-
65
-
-
78049526111
-
The photosensor protein Ppr of Rhodocista centenaria is linked to the chemotaxis signalling pathway
-
Kreutel S, Kuhn A, Kiefer D. 2010. The photosensor protein Ppr of Rhodocista centenaria is linked to the chemotaxis signalling pathway. BMC Microbiol. 10:281
-
(2010)
BMC Microbiol.
, vol.10
, pp. 281
-
-
Kreutel, S.1
Kuhn, A.2
Kiefer, D.3
-
66
-
-
2442624510
-
A Redox-controlled Molecular Switch Revealed by the Crystal Structure of a Bacterial Heme PAS Sensor
-
DOI 10.1074/jbc.M314199200
-
Kurokawa H, Lee D-S, Watanabe M, Sagami I, Mikami B, et al. 2004. A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J. Biol. Chem. 279:20186-93 (Pubitemid 38623463)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.19
, pp. 20186-20193
-
-
Kurokawa, H.1
Lee, D.-S.2
Watanabe, M.3
Sagami, I.4
Mikami, B.5
Raman, C.S.6
Shimizu, T.7
-
67
-
-
78249236863
-
Sensing of environmental signals: Classification of chemoreceptors according to the size of their ligand binding regions
-
Lacal J, Garcia-Fontana C, Munoz-Martinez F, Ramos J-L, Krell T. 2010. Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions. Environ. Microbiol. 12:2873-84
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 2873-84
-
-
Lacal, J.1
Garcia-Fontana, C.2
Munoz-Martinez, F.3
Ramos, J.-L.4
Krell, T.5
-
68
-
-
41449111029
-
Changes at the KinA PAS-A dimerization interface influence histidine kinase function
-
DOI 10.1021/bi7021156
-
Lee J, Tomchick DR, Brautigam CA, Machius M, Kort R, et al. 2008. Changes at the KinA PAS-A dimerization interface influence histidine kinase function. Biochemistry 47:4051-64 (Pubitemid 351458119)
-
(2008)
Biochemistry
, vol.47
, Issue.13
, pp. 4051-4064
-
-
Lee, J.1
Tomchick, D.R.2
Brautigam, C.A.3
Machius, M.4
Kort, R.5
Hellingwerf, K.J.6
Gardner, K.H.7
-
69
-
-
1842582674
-
Increased transcription of a potential sigma factor regulatory gene Rv1364c in Mycobacterium bovis BCG while residing in macrophages indicates use of alternative promoters
-
DOI 10.1016/j.femsle.2004.02.028, PII S0378109704001715
-
Li MS, Waddell SJ, Monahan IM, Mangan JA, Martin SL, et al. 2004. Increased transcription of a potential sigma factor regulatory gene Rv1364c in Mycobacterium bovisBCGwhile residing in macrophages indicates use of alternative promoters. FEMS Microbiol. Lett. 233:333-39 (Pubitemid 38452637)
-
(2004)
FEMS Microbiology Letters
, vol.233
, Issue.2
, pp. 333-339
-
-
Li, M.-S.1
Waddell, S.J.2
Monahan, I.M.3
Mangan, J.A.4
Martin, S.L.5
Everett, M.J.6
Butcher, P.D.7
-
70
-
-
32544442373
-
Role of the central region of NifL in conformational switches that regulate nitrogen fixation
-
DOI 10.1042/BST0340162
-
Little R, Martinez-Argudo I, Dixon R. 2006. Role of the central region of NifL in conformational switches that regulate nitrogen fixation. Biochem. Soc. Trans. 34:162-64 (Pubitemid 43235561)
-
(2006)
Biochemical Society Transactions
, vol.34
, Issue.1
, pp. 162-164
-
-
Little, R.1
Martinez-Argudo, I.2
Dixon, R.3
-
71
-
-
33646231481
-
Characterization of a ctype heme-containing PAS sensor domain from Geobacter sulfurreducens representing a novel family of periplasmic sensors in Geobacteraceae and other bacteria
-
Londer YY, Dementieva IS, D'Ausilio CA, Pokkuluri PR, Schiffer M. 2006. Characterization of a ctype heme-containing PAS sensor domain from Geobacter sulfurreducens representing a novel family of periplasmic sensors in Geobacteraceae and other bacteria. FEMS Microbiol. Lett. 258:173-81
-
(2006)
FEMS Microbiol. Lett.
, vol.258
, pp. 173-81
-
-
Londer, Y.Y.1
Dementieva, I.S.2
Dausilio, C.A.3
Pokkuluri, P.R.4
Schiffer, M.5
-
72
-
-
53749091743
-
Bacterial bilin- and flavin-binding photoreceptors
-
Losi A, Gärtner W. 2008. Bacterial bilin- and flavin-binding photoreceptors. Photochem. Photobiol. Sci. 7:1168-78
-
(2008)
Photochem. Photobiol. Sci.
, vol.7
, pp. 1168-78
-
-
Losi, A.1
Gärtner, W.2
-
73
-
-
38149078912
-
PAS-mediated dimerization of soluble guanylyl cyclase revealed by signal transduction histidine kinase domain crystal structure
-
Ma X, Sayed N, Baskaran P, Beuve A, van den Akker F. 2008. PAS-mediated dimerization of soluble guanylyl cyclase revealed by signal transduction histidine kinase domain crystal structure. J. Biol. Chem. 283:1167-78
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 1167-78
-
-
Ma, X.1
Sayed, N.2
Baskaran, P.3
Beuve, A.4
Van Den Akker, F.5
-
74
-
-
58149203237
-
CDD: Specific functional annotation with the Conserved Domain Database
-
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, et al. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37:D205-10
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
Deweese-Scott, C.5
-
76
-
-
0022430790
-
Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila
-
Meyer TE. 1985. Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila. Biochim. Biophys. Acta 806:175-83
-
(1985)
Biochim. Biophys. Acta
, vol.806
, pp. 175-83
-
-
Meyer, T.E.1
-
77
-
-
67649746308
-
Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains
-
Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, et al. 2009. Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains. J. Biol. Chem. 284:13174-84
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13174-84
-
-
Minasov, G.1
Padavattan, S.2
Shuvalova, L.3
Brunzelle, J.S.4
Miller, D.J.5
-
78
-
-
0034636982
-
Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: Crystallographic, mutagenesis and resonance Raman spectroscopic studies
-
Miyatake H, MukaiM, Park SY, Adachi S, Tamura K, et al. 2000. Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies. J. Mol. Biol. 301:415-31
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 415-31
-
-
Miyatake, H.1
Mukai, M.2
Park, S.Y.3
Adachi, S.4
Tamura, K.5
-
79
-
-
70349777587
-
Structure and signaling mechanism of Per-ARNT-Sim domains
-
Mö glich A, Ayers RA, Moffat K. 2009. Structure and signaling mechanism of Per-ARNT-Sim domains. Structure 17:1282-94
-
(2009)
Structure
, vol.17
, pp. 1282-94
-
-
Möglich, A.1
Ayers, R.A.2
Moffat, K.3
-
80
-
-
78650885619
-
Engineered photoreceptors as novel optogenetic tools
-
Möglich A, Moffat K. 2010. Engineered photoreceptors as novel optogenetic tools. Photochem. Photobiol. Sci. 9:1286-300
-
(2010)
Photochem. Photobiol. Sci.
, vol.9
, pp. 1286-300
-
-
Möglich, A.1
Moffat, K.2
-
81
-
-
33748585939
-
Ligand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing
-
DOI 10.1016/j.cell.2006.07.032, PII S0092867406011020
-
Neiditch MB, Federle MJ, Pompeani AJ, Kelly RC, Swem DL, et al. 2006. Ligand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing. Cell 126:1095-108 (Pubitemid 44380296)
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1095-1108
-
-
Neiditch, M.B.1
Federle, M.J.2
Pompeani, A.J.3
Kelly, R.C.4
Swem, D.L.5
Jeffrey, P.D.6
Bassler, B.L.7
Hughson, F.M.8
-
83
-
-
50849131895
-
Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B
-
Oka Y, Matsushita T, Mochizuki N, Quail PH, Nagatani A. 2008. Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B. PLoS Genet. 4:e1000158
-
(2008)
PLoS Genet.
, vol.4
-
-
Oka, Y.1
Matsushita, T.2
Mochizuki, N.3
Quail, P.H.4
Nagatani, A.5
-
84
-
-
0141531993
-
The NMR structure of the sensory domain of the membranous two-component fumarate sensor (histidine protein kinase) DcuS of Escherichia coli
-
DOI 10.1074/jbc.C300344200
-
Pappalardo L, Janausch IG, Vijayan V, Zientz E, Junker J, et al. 2003. The NMR structure of the sensory domain of the membranous two-component fumarate sensor (histidine protein kinase) DcuS of Escherichia coli. J. Biol. Chem. 278:39185-88 (Pubitemid 37221821)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.40
, pp. 39185-39188
-
-
Pappalardo, L.1
Janausch, I.G.2
Vijayan, V.3
Zientz, E.4
Junker, J.5
Peti, W.6
Zweckstetter, M.7
Unden, G.8
Griesinger, C.9
-
85
-
-
1542327658
-
Insights into Signal Transduction Involving PAS Domain Oxygen-Sensing Heme Proteins from the X-ray Crystal Structure of Escherichia Coli Dos Heme Domain (Ec DosH)
-
DOI 10.1021/bi035980p
-
Park H, Suquet C, Satterlee JD, Kang C. 2004. Insights into signal transduction involving PAS domain oxygen-sensing heme proteins from the X-ray crystal structure of Escherichia coli Dos heme domain (Ec DosH). Biochemistry 43:2738-46 (Pubitemid 38327805)
-
(2004)
Biochemistry
, vol.43
, Issue.10
, pp. 2738-2746
-
-
Park, H.1
Suquet, C.2
Satterlee, J.D.3
Kang, C.4
-
86
-
-
0027243652
-
Signal transduction schemes of bacteria
-
DOI 10.1016/0092-8674(93)90267-T
-
Parkinson JS. 1993. Signal transduction schemes of bacteria. Cell 73:857-71 (Pubitemid 23165604)
-
(1993)
Cell
, vol.73
, Issue.5
, pp. 857-871
-
-
Parkinson, J.S.1
-
87
-
-
0032568630
-
Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily
-
Pellequer JL, Wager-Smith KA, Kay SA, Getzoff ED. 1998. Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc. Natl. Acad. Sci. USA 95:5884-90
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5884-90
-
-
Pellequer, J.L.1
Wager-Smith, K.A.2
Kay, S.A.3
Getzoff, E.D.4
-
88
-
-
78149272906
-
Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain
-
Philip AF, Kumauchi M, Hoff WD. 2010. Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain. Proc. Natl. Acad. Sci. USA 107:17986-91
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 17986-91
-
-
Philip, A.F.1
Kumauchi, M.2
Hoff, W.D.3
-
89
-
-
40949155089
-
Structures and solution properties of two novel periplasmic sensor domains with c-type heme from chemotaxis proteins of Geobacter sulfurreducens: Implications for signal transduction
-
Pokkuluri PR, Pessanha M, Londer YY, Wood SJ, Duke NE, et al. 2008. Structures and solution properties of two novel periplasmic sensor domains with c-type heme from chemotaxis proteins of Geobacter sulfurreducens: implications for signal transduction. J. Mol. Biol. 377:1498-517
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 1498-517
-
-
Pokkuluri, P.R.1
Pessanha, M.2
Londer, Y.Y.3
Wood, S.J.4
Duke, N.E.5
-
90
-
-
38849124779
-
The Salmonellae PhoQ sensor: Mechanisms of detection of phagosome signals
-
DOI 10.1111/j.1462-5822.2007.01111.x
-
Prost LR, Miller SI. 2008. The Salmonellae PhoQ sensor:mechanisms of detection of phagosome signals. Cell Microbiol. 10:576-82 (Pubitemid 351194087)
-
(2008)
Cellular Microbiology
, vol.10
, Issue.3
, pp. 576-582
-
-
Prost, L.R.1
Miller, S.I.2
-
91
-
-
77955247454
-
An analysis of the solution structure and signaling mechanism of LovK, a sensor histidine kinase integrating light and redox signals
-
Purcell EB, McDonald CA, Palfey BA, Crosson S. 2010. An analysis of the solution structure and signaling mechanism of LovK, a sensor histidine kinase integrating light and redox signals. Biochemistry 49:6761-70
-
(2010)
Biochemistry
, vol.49
, pp. 6761-70
-
-
Purcell, E.B.1
McDonald, C.A.2
Palfey, B.A.3
Crosson, S.4
-
92
-
-
36749016807
-
A photosensory two-component system regulates bacterial cell attachment
-
DOI 10.1073/pnas.0705887104
-
Purcell EB, Siegal-Gaskins D, Rawling DC, Fiebig A, Crosson S. 2007. A photosensory two-component system regulates bacterial cell attachment. Proc. Natl. Acad. Sci. USA 104:18241-46 (Pubitemid 350210851)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.46
, pp. 18241-18246
-
-
Purcell, E.B.1
Siegal-Gaskins, D.2
Rawling, D.C.3
Fiebig, A.4
Crosson, S.5
-
93
-
-
70350501347
-
A flavin cofactor-binding PAS domain regulates c-di-GMP synthesis in AxDGC2 from Acetobacter xylinum
-
Qi Y, Rao F, Luo Z, Liang Z-X. 2009. A flavin cofactor-binding PAS domain regulates c-di-GMP synthesis in AxDGC2 from Acetobacter xylinum. Biochemistry 48:10275-85
-
(2009)
Biochemistry
, vol.48
, pp. 10275-85
-
-
Qi, Y.1
Rao, F.2
Luo, Z.3
Liang, Z.-X.4
-
94
-
-
0030883388
-
The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behavior
-
DOI 10.1073/pnas.94.20.10541
-
Rebbapragada A, Johnson MS, Harding GP, Zuccarelli AJ, Fletcher HM, et al. 1997. The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behavior. Proc. Natl. Acad. Sci. USA 94:10541-46 (Pubitemid 27430770)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.20
, pp. 10541-10546
-
-
Rebbapragada, A.1
Johnson, M.S.2
Harding, G.P.3
Zuccarelli, A.J.4
Fletcher, H.M.5
Zhulin, I.B.6
Taylor, B.L.7
-
95
-
-
0141643091
-
The structure of the periplasmic ligand-binding domain of the sensor kinase CitA reveals the first extracellular pas domain
-
DOI 10.1074/jbc.M305864200
-
Reinelt S, Hofmann E, Gerharz T, BottM,Madden DR. 2003. The structure of the periplasmic ligandbinding domain of the sensor kinase CitA reveals the first extracellular PAS domain. J. Biol. Chem. 278:39189-96 (Pubitemid 37221822)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.40
, pp. 39189-39196
-
-
Reinelt, S.1
Hofmann, E.2
Gerharz, T.3
Bott, M.4
Madden, D.R.5
-
96
-
-
76449108491
-
FixK, a global regulator of microaerobic growth, controls photosynthesis in Rhodopseudomonas palustris
-
Rey FE, Harwood CS. 2010. FixK, a global regulator of microaerobic growth, controls photosynthesis in Rhodopseudomonas palustris. Mol. Microbiol. 75:1007-20
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 1007-20
-
-
Rey, F.E.1
Harwood, C.S.2
-
97
-
-
0026743174
-
Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
-
Russell RB, Barton GJ. 1992. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. Proteins 14:309-23
-
(1992)
Proteins
, vol.14
, pp. 309-23
-
-
Russell, R.B.1
Barton, G.J.2
-
98
-
-
0034622586
-
Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin
-
DOI 10.1021/bi000585+
-
SalomonM,Christie JM, KniebE,Lempert U, BriggsWR.2000. Photochemical andmutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. Biochemistry 39:9401-10 (Pubitemid 30626330)
-
(2000)
Biochemistry
, vol.39
, Issue.31
, pp. 9401-9410
-
-
Salomon, M.1
Christie, J.M.2
Knieb, E.3
Lempert, U.4
Briggs, W.R.5
-
99
-
-
58849141619
-
Artificial ligand binding within the HIF2alpha PAS-B domain of theHIF2 transcription factor
-
Scheuermann TH, Tomchick DR,MachiusM, Guo Y, Bruick RK, Gardner KH. 2009. Artificial ligand binding within the HIF2alpha PAS-B domain of theHIF2 transcription factor. Proc. Natl. Acad. Sci. USA 106:450-55
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 450-55
-
-
Scheuermann, T.H.1
Tomchick, D.R.2
MacHius, M.3
Guo, Y.4
Bruick, R.K.5
Gardner, K.H.6
-
101
-
-
0031921952
-
The redox- and fixed nitrogen-responsive regulatory protein NIFL from Azotobacter vinelandii comprises discrete flavin and nucleotide-binding domains
-
DOI 10.1046/j.1365-2958.1998.00788.x
-
Soderback E, Reyes-Ramirez F, Eydmann T, Austin S, Hill S, Dixon R. 1998. The redox- and fixed nitrogen-responsive regulatory protein NIFL from Azotobacter vinelandii comprises discrete flavin and nucleotide-binding domains. Mol. Microbiol. 28:179-92 (Pubitemid 28160123)
-
(1998)
Molecular Microbiology
, vol.28
, Issue.1
, pp. 179-192
-
-
Soderback, E.1
Reyes-Ramirez, F.2
Eydmann, T.3
Austin, S.4
Hill, S.5
Dixon, R.6
-
102
-
-
0027324441
-
The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein
-
Sprenger WW, Hoff WD, Armitage JP, Hellingwerf KJ. 1993. The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein. J. Bacteriol. 175:3096-104 (Pubitemid 23148746)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.10
, pp. 3096-3104
-
-
Sprenger, W.W.1
Hoff, W.D.2
Armitage, J.P.3
Hellingwerf, K.J.4
-
103
-
-
0000984679
-
Recent developments in carbon transport and metabolism in symbiotic systems
-
Streeter JG. 1995. Recent developments in carbon transport and metabolism in symbiotic systems. Symbiosis 19:175-96
-
(1995)
Symbiosis
, vol.19
, pp. 175-96
-
-
Streeter, J.G.1
-
104
-
-
34548278927
-
Blue-light-activated histidine kinases: Two-component sensors in bacteria
-
DOI 10.1126/science.1144306
-
Swartz TE,Tseng T-S, FredericksonMA, ParisG,Comerci DJ, et al. 2007. Blue-light-activated histidine kinases: two-component sensors in bacteria. Science 317:1090-93 (Pubitemid 47330194)
-
(2007)
Science
, vol.317
, Issue.5841
, pp. 1090-1093
-
-
Swartz, T.E.1
Tseng, T.-S.2
Frederickson, M.A.3
Paris, G.4
Comerci, D.J.5
Rajashekara, G.6
Kim, J.-G.7
Mudgett, M.B.8
Splitter, G.A.9
Ugalde, R.A.10
Goldbaum, F.A.11
Briggs, W.R.12
Bogomolni, R.A.13
-
105
-
-
34547137430
-
95, in locking catalysis of the phosphodiesterase from Escherichia coli (Ec DOS) toward cyclic diGMP
-
DOI 10.1074/jbc.M701920200
-
Tanaka A, Takahashi H, Shimizu T. 2007. Critical role of the heme axial ligand, Met95, in locking catalysis of the phosphodiesterase from Escherichia coli (Ec DOS) toward cyclic diGMP. J. Biol. Chem. 282:21301-7 (Pubitemid 47099927)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.29
, pp. 21301-21307
-
-
Tanaka, A.1
Takahashi, H.2
Shimizu, T.3
-
106
-
-
0032990441
-
PAS domains: Internal sensors of oxygen, redox potential, and light
-
Taylor BL, Zhulin IB. 1999. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63:479-506 (Pubitemid 29264980)
-
(1999)
Microbiology and Molecular Biology Reviews
, vol.63
, Issue.2
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
107
-
-
0032694979
-
Aerotaxis and other energy-sensing behavior in bacteria
-
DOI 10.1146/annurev.micro.53.1.103
-
Taylor BL, Zhulin IB, Johnson MS. 1999. Aerotaxis and other energy-sensing behavior in bacteria. Annu. Rev. Microbiol. 53:103-28 (Pubitemid 29503727)
-
(1999)
Annual Review of Microbiology
, vol.53
, pp. 103-128
-
-
Taylor, B.L.1
Zhulin, I.B.2
Johnson, M.S.3
-
108
-
-
70350047301
-
An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control
-
Tuckerman JR, Gonzalez G, Sousa EH, Wan X, Saito JA, et al. 2009. An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control. Biochemistry 48:9764-74
-
(2009)
Biochemistry
, vol.48
, pp. 9764-74
-
-
Tuckerman, J.R.1
Gonzalez, G.2
Sousa, E.H.3
Wan, X.4
Saito, J.A.5
-
109
-
-
33748650790
-
Biochemical characterization of MmoS, a sensor protein involved in copper-dependent regulation of soluble methane monooxygenase
-
DOI 10.1021/bi060693h
-
Ukaegbu UE,Henery S, Rosenzweig AC. 2006. Biochemical characterization ofMmoS, a sensor protein involved in copper-dependent regulation of soluble methane monooxygenase. Biochemistry 45:10191-98 (Pubitemid 44384794)
-
(2006)
Biochemistry
, vol.45
, Issue.34
, pp. 10191-10198
-
-
Ukaegbu, U.E.1
Henery, S.2
Rosenzweig, A.C.3
-
110
-
-
64349123371
-
Structure of the redox sensor domain of Methylococcus capsulatus (Bath) MmoS
-
Ukaegbu UE, Rosenzweig AC. 2009. Structure of the redox sensor domain of Methylococcus capsulatus (Bath) MmoS. Biochemistry 48:2207-15
-
(2009)
Biochemistry
, vol.48
, pp. 2207-15
-
-
Ukaegbu, U.E.1
Rosenzweig, A.C.2
-
111
-
-
12944325784
-
One-component systems dominate signal transduction in prokaryotes
-
DOI 10.1016/j.tim.2004.12.006, PII S0966842X04002720
-
Ulrich LE, Koonin EV, Zhulin IB. 2005. One-component systems dominate signal transduction in prokaryotes. Trends Microbiol. 13:52-56 (Pubitemid 40174862)
-
(2005)
Trends in Microbiology
, vol.13
, Issue.2
, pp. 52-56
-
-
Ulrich, L.E.1
Koonin, E.V.2
Zhulin, I.B.3
-
112
-
-
36248934750
-
Photosensing in chemotrophic, non-phototrophic bacteria: Let thlre be light sensing too
-
DOI 10.1016/j.tim.2007.09.009, PII S0966842X07002041
-
van der Horst MA, Key J, Hellingwerf KJ. 2007. Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too. Trends Microbiol. 15:554-62 (Pubitemid 350137737)
-
(2007)
Trends in Microbiology
, vol.15
, Issue.12
, pp. 554-562
-
-
Van Der Horst, M.A.1
Key, J.2
Hellingwerf, K.J.3
-
113
-
-
0031019880
-
2+
-
DOI 10.1074/jbc.272.3.1440
-
Vescovi EG, Ayala YM, Di Cera E, Groisman EA. 1997. Characterization of the bacterial sensor protein PhoQ. Evidence for distinct binding sites for Mg2+ and Ca2+. J. Biol. Chem. 272:1440-43 (Pubitemid 27043217)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.3
, pp. 1440-1443
-
-
Vescovi, E.G.1
Ayala, Y.M.2
Cera, E.D.3
Groisman, E.A.4
-
114
-
-
0029046744
-
An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited
-
Vogt G, Etzold T, Argos P. 1995. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited. J. Mol. Biol. 249:816-31
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
-
115
-
-
59649088255
-
Crystal structure of the IrrE protein, a central regulator of DNA damage repair in Deinococcaceae
-
Vujicic-Zagar A, Dulermo R, Le Gorrec M, Vannier F, Servant P, et al. 2009. Crystal structure of the IrrE protein, a central regulator of DNA damage repair in Deinococcaceae. J. Mol. Biol. 386:704-16
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 704-16
-
-
Vujicic-Zagar, A.1
Dulermo, R.2
Le Gorrec, M.3
Vannier, F.4
Servant, P.5
-
116
-
-
76649086069
-
PASdomain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis
-
XieZ,Ulrich LE, Zhulin IB,AlexandreG. 2010.PASdomain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis. Proc. Natl. Acad. Sci. USA 107:2235-40
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2235-40
-
-
Xie, Z.1
Ulrich, L.E.2
Zhulin, I.B.3
Alexandre, G.4
-
117
-
-
28044447426
-
Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA
-
DOI 10.1021/bi0513352
-
Yoshioka S, Kobayashi K, Yoshimura H, Uchida T, Kitagawa T, Aono S. 2005. Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA. Biochemistry 44:15406-13 (Pubitemid 41683135)
-
(2005)
Biochemistry
, vol.44
, Issue.46
, pp. 15406-15413
-
-
Yoshioka, S.1
Kobayashi, K.2
Yoshimura, H.3
Uchida, T.4
Kitagawa, T.5
Aono, S.6
-
118
-
-
52249108909
-
C4-dicarboxylates sensing mechanism revealed by the crystal structures of DctB sensor domain
-
Zhou Y-F, Nan B, Nan J, Ma Q, Panjikar S, et al. 2008. C4-dicarboxylates sensing mechanism revealed by the crystal structures of DctB sensor domain. J. Mol. Biol. 383:49-61
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 49-61
-
-
Zhou, Y.-F.1
Nan, B.2
Nan, J.3
Ma, Q.4
Panjikar, S.5
-
119
-
-
78650901467
-
Tripping the light fantastic: Blue-light photoreceptors as examples of environmentally modulated protein-protein interactions
-
Zoltowski BD, Gardner KH. 2011. Tripping the light fantastic: blue-light photoreceptors as examples of environmentally modulated protein-protein interactions. Biochemistry 50:4-16
-
(2011)
Biochemistry
, vol.50
, pp. 4-16
-
-
Zoltowski, B.D.1
Gardner, K.H.2
|