Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria

Archives of Microbiology

Volumn 170, Issue 2, 1998, Pages 69-77

  Dimroth, Peter ^a   Schink, Bernhard ^b  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF KONSTANZ   (Germany)

Author keywords

ATP synthase; Decarboxylation; Electrogenic substrate product antiporter; Glutarate; Malo lactic fermentation; Malonate; Oxalate; Sodium ion pump; Succinate

Indexed keywords

ANAEROBIC METABOLISM; DECARBOXYLATION; ENERGY CONSERVATION; ENERGY RESOURCE; FERMENTATION; NONHUMAN; PHOSPHATE METABOLISM; PRIORITY JOURNAL; PROTON SODIUM EXCHANGE; SHORT SURVEY;

ADENOSINE TRIPHOSPHATE; BACTERIA, ANAEROBIC; CARBOXY-LYASES; DECARBOXYLATION; DICARBOXYLIC ACIDS; ELECTRON TRANSPORT; ELECTROPHYSIOLOGY; ENERGY METABOLISM; FERMENTATION; NA(+)-K(+)-EXCHANGING ATPASE; PROPIONIBACTERIUM;

EID: 0031818761     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002030050616     Document Type: Short Survey

References (60)

1. Abe K, Hayashi H, Maloney PC (1996) Exchange of aspartate and alanine: mechanism for development of a proton-motive force in bacteria. J Biol Chem 271:3079-3084
2. Allison MJ, Dawson KA, Mayberry WR, Foss JG (1985) Oxalobacter formigenes gen. nov., sp. nov.: oxalate-degrading anaerobes that inhabit the gastrointestinal tract. Arch Microbiol 141:1-7
3. Anantharam V, Allison MJ, Maloney PC (1989) Oxalate:formate exchange: the basis for energy coupling in Oxalobacter. J Biol Chem 264:7244-7250
4. Baetz AL, Allison MJ (1989) Purification and characterization of oxalyl Coenzyme A decarboxylase from Oxalobacter formigenes. J Bacteriol 171:2605-2608
5. + pump glutaconyl-CoA decarboxylate from Acidaminococcus fermentans in Escherichia coli. Eur J Biochem 211:697-702
6. Berg M, Hilbi H, Dimroth P (1996) The acyl carrier protein of malonate decarboxylase of Malonomonas rubra contains 2′-(5″-phosphoribosyl)-3′-dephosphocoenzyme A as a prosthetic group. Biochemistry 35:4689-4696
7. + pump and evidence for their function. Eur J Biochem 245:103-115
8. Bott M, Pfister K, Burda P, Kalbermatter O, Woehlke G, Dimroth P (1997) Methylmalonyl-CoA decarboxylase from Propionigenium modestum: cloning and sequencing of the structural genes and purification of the enzyme complex. Eur J Biochem 250: 590-599
9. 2-utilizing acetogen isolated from termites. Arch Microbiol 150:282-288
10. Buckel W, Semmler R (1983) Purification, characterization and reconstitution of glutaconyl-CoA decarboxylase, a biotin-dependent sodium pump from anaerobic bacteria. Eur J Biochem 136:427-436
11. Caspritz G, Radler F (1983) Malolactic enzyme of Lactobacillus plantarum. Purification, properties, and distribution among bacteria. J Biol Chem 258:4907-4910
12. Dehning I, Schink B (1989a) Two new species of anaerobic oxalate-fermenting bacteria, Oxalobacter vibrioformis sp. nov. and Clostridium oxalicum sp. nov., from sediment samples. Arch Microbiol 153:79-84
13. Dehning I, Schink B (1989b) Malonomonas rubra gen. nov. sp. nov., a microaerotolerant anaerobic bacterium growing by decarboxylation of malonate. Arch Microbiol 151:427-433
14. Dehning I, Schink B (1994) Anaerobic degradation of malonate via malonyl-CoA by Sporomusa malonica, Klebsiella oxytoca, and Rhodobacter capsulatus. Antonie Van Leeuwenhoek 66: 343-350
15. Dehning I, Stieb M, Schink B (1989) Sporomusa malonica sp. nov., a homoacetogenic bacterium growing by decarboxylation of malonate or succinate. Arch Microbiol 151:421-426
16. Denger K, Schink B (1992) Energy conservation by succinate decarboxylation in Veillonella parvula. J Gen Microbiol 138: 967-971
17. + pump and its individual subunits in Escherichia coli and analysis of their function. Eur J Biochem 231:790-801
18. + pump. EMBO J 15:1842-1849
19. +-activated oxaloacetate decarboxylase from Klebsiella aerogenes. Eur J Biochem 121:443-449
20. Dimroth P (1997) Primary sodium ion translocating enzymes. Biochem Biophys Acta 1318:11-51
21. Dimroth P, Hilbi H (1997) Enzymic and genetic basis for bacterial growth on malonate. Mol Microbiol 25:3-10
22. Härtel U, Buckel W (1996) Sodium ion-dependent hydrogen production in Acidaminococcus fermentans. Arch Microbiol 166: 350-356
23. +-activated malonate decarboxylase system of Malonomonas rubra: acetyl-S-acyl carrier protein: malonate acyl carrier protein-SH transferase. Arch Microbiol 162:48-56
24. Hilbi H, Dehning I, Schink B, Dimroth P (1992) Malonate decarboxylase of Malonomonas rubra, a novel type of biotin-containing acetyl enzyme. Eur J Biochem 207:117-123
25. + as coupling ion. EMBO J 3:1665-1670
26. Hoenke S, Schmid M, Dimroth P (1997) Sequence of a gene cluster from Klebsiella pneumoniae encoding malonate decarboxylase and expression of the enzyme in Escherichia coli. Eur J Biochem 246:530-538
27. Huder JB, Dimroth P (1993) Sequence of the sodium ion pump methylmalonyl-CoA decarboxylase from Veillonella parvula. J Biol Chem 268:24564-24571
28. Huder JB, Dimroth P (1995) Expression of the sodium ion pump methylmalonyl-CoA decarboxylase from Veillonella parvula and of mutated enzyme specimens in Escherichia coli. J Bacteriol 177:3623-3630
29. Janssen PH (1992) Growth yield increase and ATP formation linked to succinate decarboxylation in Veillonella parvula. Arch Microbiol 157:442-445
30. Janssen PH, Harfoot CG (1990) Isolation of a Citrobacter species able to grow on malonate under strictly anaerobic conditions. J Gen Microbiol 136:1037-1042
31. Janssen PH, Harfoot CG (1992) Anaerobic malonate decarboxylation by Citrobacter diversus. Growth and metabolic studies, and evidence of ATP formation. Arch Microbiol 157:472-474
32. Janssen PH, Liesack W (1995) Succinate decarboxylation by Propionigenium maris sp. nov., a new anaerobic bacterium from an estuarine sediment. Arch Microbiol 164:29-35
33. Janssen PH, Liesack W, Kluge C, Seeliger S, Schink B, Harfoot CG (1996) Sodium-dependent succinate decarboxylation by a new anaerobic bacterium belonging to the genus Peptostreptococcus. Antonie Van Leeuwenhoek 70:11-20
34. 0 ATPase in Escherichia coli by homologous recombination. Eur J Biochem 218:937-944
35. Kandler O, Winter J, Stetter KO (1973) Zur Frage der Beeinflussung der Glucosevergärung durch L-Malat bei Leuconostoc mesenteroides. Arch Mikrobiol 90:60-75
36. Kolattokudy PE, Poulose AJ, Kim YS (1981) Malonyl-CoA decarboxylase from avian, mammalian and mirobial sources. Methods Enzymol 71:150-163
37. Kolb S, Otte H, Nagel B, Schink B (1992) Energy conservation in malolactic fermentation by Lactobacillus plantarum and Lactobacillus sake. Arch Microbiol 157:457-463
38. Laubinger W, Dimroth P (1988) Characterization of the ATPase of Propionigenium modestum as a primary sodium pump. Biochemistry 27:7531-7537
39. Laubinger W, Dimroth P (1989) The sodium ion translocating adenosinetriphosphatase of Propionigenium modestum pumps protons at low sodium ion concentrations. Biochemistry 28: 7194-7198
40. 0 of Propionigenium modestum is a functional sodium ion pump. Biochemistry 29:5458-5463
41. Lonvand-Funel A, Strasser de Saad AM (1982) Purification and properties of a malolactic enzyme from a strain of Leuconostoc mesenteroides isolated from grapes. Appl Environ Microbiol 43:357-361
42. Loubiere P, Salou P, Leroy M-J, Lindley ND, Pareilleux A (1992) Electrogenic malate uptake and improved growth energetics of the malolactic bacterium Leuconostoc oenos grown on glucose-malate mixtures. J Bacteriol 174:5302-5308
43. Maloney PC, Ambudkar SV, Anantharam V, Sonna LA, Varadhachary A (1990) Anion exchange mechanisms in bacteria. Microbiol Rev 54:1-17
44. Matthies C, Schink B (1992a) Fermentative degradation of glutarate via decarboxylation by newly isolated anaerobic bacteria. Arch Microbiol 157:290-296
45. Matthies C, Schink B (1992b) Reciprocal isomerization of butyrate and isobutyrate by strain WoG13, and methaonogenic isobutyrate degradation by a defined triculture. Appl Environ Microbiol 58:1435-1439
46. Matthies C, Schink B (1992c) Energy conservation in fermentative glutarate degradation by the bacterial strain WoG13. FEMS Microbiol Lett 100:221-226
47. Molenaar D, Boesscher JS, Ten Brink B, Driessen AZM, Konings WN (1993) Generation of a proton motive force by histidine decarboxylation and electrogenic histidine/histamine antiport in Lactobacillus buchneri. J Bacteriol 175:2864-2870
48. 12-dependent isobutyryl-CoA mutase reaction. J Am Chem Soc 117: 11285-11291
49. Olsen EB, Russell JB, Henick-Kling T (1991) Electrogenic L-malate transport by Lactobacillus plantarum: a basis for energy derivation from malolactic fermentation. J Bacteriol 173:6199-6206
50. Otto R, Rosenberg ASM, Veldkamp H, Konings WN (1980) Generation of an electrochemical proton gradient in Streptococcus cremoris by lactate efflux. Proc Natl Acad Sci USA 77:5502-5506
51. Poolman B, Konings WN (1993) Secondary solute transport in bacteria. Biochim Biophys Acta 1183:5-39
52. Poolman B et al. (1991) Malolactic fermentation: electrogenic malate uptake and malate/lactate antiport generate metabolic energy. J Bacteriol 173:6030-6037
53. Schink B (1990) Conservation of small amounts of energy in fermenting bacteria. In: Finn RK and Präve P (eds) Biotechnology focus, vol 2. Hanser, Munich Vienna New York, pp 63-89
54. Schink B, Pfennig N (1982) Propionigenium modestum gen. nov. sp. nov., a new strictly anaerobic, nonsporing bacterium growing on succinate. Arch Microbiol 133:209-216
55. Schmid M, Berg M, Hilbi H, Dimroth P (1996) Malonate decarboxylase of Klebsiella pneumoniae catalyses the turnover of acetyl and malonyl thioester residues on a coenzyme A-like prosthetic group. Eur J Biochem 237:221-228
56. Schütz M, Radler F (1973) Das Vorkommen von Malatenzym und Malo-Lactat-Enzym bei verschiedenen Milchsäurebakterien. Arch Mikrobiol 96:329-339
57. Smith RL, Strohmaier FE, Oremland RS (1985) Isolation of anaerobic oxalate-degrading bacteria from freshwater lake sediments. Arch Microbiol 141:8-13
58. Stouthamer AH (1979) The search for correlation between theoretical and experimental growth yields. In: Quayle JR (ed) International review of biochemistry, vol 21. University Park Press, Baltimore, pp 1-47
59. Thauer RK, Jungermann K, Decker K (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 41:100-180
60. Wohlfarth G, Buckel W (1985) Sodium ion gradient as energy source for Peptostreptococcus asaccharolyticus. Arch Microbiol 142:128-135