Critical role of the heme axial ligand, Met95, in locking catalysis of the phosphodiesterase from Escherichia coli (Ec DOS) toward cyclic diGMP

Journal of Biological Chemistry

Volumn 282, Issue 29, 2007, Pages 21301-21307

  Tanaka, Atsunari ^a   Takahashi, Hiroto ^a   Shimizu, Toru ^a,b  

^a TOHOKU UNIVERSITY   (Japan)

^b NONE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC LOCK; CYCLIC DIGMP; RAPID AUTOXIDATION; STRUCTURAL CHANGES; WILD-TYPE ENZYMES;

CATALYSIS; CHEMICAL SENSORS; ENZYMES; ESCHERICHIA COLI; HYDROLYSIS; MUTAGENESIS; OXIDATION; SPECTROSCOPIC ANALYSIS;

LIGANDS;

ARGININE; CARBON MONOXIDE; CYCLIC DIGMP; CYCLIC GMP; FERROUS ION; HEME; LIGAND; METHIONINE; NITRIC OXIDE; OXYGEN; PHOSPHODIESTERASE; UNCLASSIFIED DRUG;

ARTICLE; AUTOOXIDATION; CATALYSIS; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME REGULATION; ESCHERICHIA COLI; MUTANT; MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN INTERACTION; SPECTROSCOPY; WILD TYPE;

3',5'-CYCLIC-NUCLEOTIDE PHOSPHODIESTERASE; CARBON MONOXIDE; CATALYSIS; CYCLIC GMP; ESCHERICHIA COLI; HEME; IRON; LIGANDS; METHIONINE; MODELS, MOLECULAR; NITRIC OXIDE; OXYGEN; PHOSPHORIC DIESTER HYDROLASES; PROTEIN BINDING; PROTEIN CONFORMATION;

ESCHERICHIA COLI;

EID: 34547137430     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M701920200     Document Type: Article

References (34)

1. Römling, U., and Amikam, D. (2006) Curr. Opin. Microbiol. 9, 218-228
2. Galperin, M. Y. (2004) Environ. Microbiol. 6, 552-567
3. Méndez-Ortiz, M. M., Hyodo, M., Hayakawa, Y., and Membrillo-Hernández, J. (2006) J. Biol. Chem. 281, 8090-8099
4. Schmidt, A. J., Ryjenkov, D. A., and Gomelsky, M. (2005) J. Bacteriol. 187, 4774-4781
5. Ryjenkov, D. A., Simm, R., Römling, U., and Gomelsky, M. (2006) J. Biol. Chem. 281, 30310-30314
6. Hoffman, L. R., D'Argenio, D. A., MacCoss, M. J., Zhang, Z., Jones, R. A., and Miller, S. I. (2005) Nature 436, 1171-1175
7. Christen, M., Christen, B., Folcher, M., Schauerte, A., and Jenal, U. (2005) J. Biol. Chem. 280, 30829-30837
8. Tamayo, R., Tischler, A. D., and Camilli, A. (2005) J. Biol. Chem. 280, 33324-33330
9. Kulesekara, H., Lee, V., Brencic, A., Liberati, N., Urbach, J., Miyata, S., Lee, D. G., Neely, A. N., Hyodo, M., Hayakawa, Y., Ausubel, F. M., and Lory, S. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 28392844
10. Karaolis, D. K. R., Chen, K., Lipsky, M., Elnabawi, A., Catalano, J., Hyodo, M., Hayakawa, Y., and Raufman, J.-P. (2005) Biochem. Biophys. Res. Commun. 329, 40-45
11. Delgado-Nixon, V. M., Gonzalez, G., and Gilles-Gonzalez, M. A. (2000) Biochemistry 39, 2685-2691
12. Chang, A. L., Tuckerman, J. R., Gonzalez, G., Mayer, R., Weinhouse, H., Volman, G., Amikam, D., Benziman, M., and Gilles-Gonzalez, M. A. (2001) Biochemistry 40, 3420-3426
13. Yoshimura-Suzuki, T., Sagami, I., Yokota, N., Kurokawa, H., and Shimizu, T. (2005) J. Bacteriol. 187, 6678-6682
14. Gilles-Gonzalez, M. A., and Gonzalez, G. (2005) J. Inorg. Biochem. 99, 1-22
15. Takahashi, H., and Shimizu, T. (2006) Chem. Lett. 35, 970-971
16. Park, H., Suquet, C., Satterlee, J. D., and Kang, C.-H. (2004) Biochemistry 43, 2738-2746
17. Kurokawa, H., Lee, D. S., Watanabe, M., Sagami, I., Mikami, B., Raman, C. S., and Shimizu, T. (2004) J. Biol. Chem. 279, 20186-20193
18. Akimoto, S., Tanaka, A., Nakamura, K., Shiro, Y., and Nakamura, H. (2003) Biochem. Biophys. Res. Commun. 304, 136-142
19. Sasakura, Y., Hirata, S., Sugiyama, S., Suzuki, S., Taguchi, S., Watanabe, M., Matsui, T., Sagami, I., and Shimizu, T. (2002) J. Biol. Chem. 277, 23821-23827
20. Taguchi, S., Matsui, T., Igarashi, J., Sasakura, Y., Araki, Y., Ito, O., Sugiyama, S., Sagami, I., and Shimizu, T. (2004) J. Biol. Chem. 279, 3340-3347
21. Hirata, S., Matsui, T., Sasakura, Y., Sugiyama, S., Yoshimura, T., Sagami, I., and Shimizu, T. (2003) Eur. J. Biochem. 270, 4771-4779
22. Sato, A., Sasakura, Y., Sugiyama, S., Sagami, I., Shimizu, T., Mizutani, Y., and Kitagawa, T. (2002) J. Biol. Chem. 277, 32650-32658
23. Gong, W., Hao, B., and Chan, M. K. (2000) Biochemistry 39, 3955-3962
24. Tanaka, A., Nakamura, H., Shiro, Y., and Fujii, H. (2006) Biochemistry 45, 2515-2523
25. Dunham, C. M., Dioum, E. M., Tuckerman, J. R., Gonzalez, G., Scott, W. G., and Gilles-Gonzalez, M. A. (2003) Biochemistry 42, 7701-7708
26. Watanabe, M., Matsui, T., Sasakura, Y., Sagami, I., and Shimizu, T. (2002) Biochem. Biophys. Res. Commun. 299, 169-172
27. Sasakura, Y., Yoshimura-Suzuki, T., Kurokawa, H., and Shimizu, T. (2006) Acc. Chem. Res. 39, 37-43
28. Springer, B. A., Sligar, S. G., Olson, J. S., and Phillips, G. N., Jr. (1994) Chem. Rev. 94, 699-714
29. El-Mashtoly, S. F., Takahashi, H., Shimizu, T., and Kitagawa, T. (2007) J. Am. Chem. Soc. 129, 3556-3563
30. Crosson, S., and Moffat, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 2995-3000
31. Jain, R., and Chan, M. K. (2003) J. Biol. Inorg. Chem. 8, 1-11
32. Yang, J., Zhang, L., Erbel, P. J. A., Gardner, K. H., Ding, K., Garcia, J. A., and Bruick, R. K. (2005) J. Biol. Chem. 280, 36047-36054
33. Vreede, J., van der Horst, M. A., Hellinger, K. J., Crielaard, W., and van Aalten, D. M. F. (2003) J. Biol. Chem. 278, 18434-18439
34. DeLano, W. L. (2002) The PyMOL Molecular Graphics System, DeLano Scientific, San Carlos, CA