Crystal structure of a functional dimer of the PhoQ sensor domain

Journal of Biological Chemistry

Volumn 283, Issue 20, 2008, Pages 13762-13770

  Cheung, Jonah ^a   Bingman, Craig A ^a,b   Reyngold, Marsha ^a   Hendrickson, Wayne A ^a   Waldburger, Carey D ^a,c  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c WILLIAM PATERSON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACIDS; BACTERIOLOGY; ESCHERICHIA COLI; PLANTS (BOTANY); POSITIVE IONS; SENSORS;

ASPARTATE RESIDUES; CATALYTIC ACTIVITIES; COMPONENT SYSTEMS; DIMER INTERFACES; DIVALENT CATIONS; DO-MAINS; DOMAIN STRUCTURES; ENTERIC BACTERIA; EXTRACELLULAR CONCENTRATIONS; FUNCTIONAL DIMERS; HISTIDINE KINASES; IN-VIVO; MUTANT VARIANTS; NICKEL IONS; PERIPLASMIC; RESPONSE REGULATORS; SALT BRIDGES; SENSOR DOMAINS; SIGNALING SYSTEMS; STRESS RESPONSES; TYPE STRUCTURES; WILD TYPES;

CRYSTAL STRUCTURE;

ARGININE; ASPARTIC ACID; BACTERIAL PROTEIN; DIMER; MAGNESIUM ION; NICKEL; PHOP PROTEIN; PROTEIN HISTIDINE KINASE; PROTEIN PHOQ; UNCLASSIFIED DRUG; DPIB PROTEIN, E COLI; ESCHERICHIA COLI PROTEIN; MAGNESIUM; PHOQ PROTEIN, BACTERIA; PROTEIN KINASE;

ARTICLE; CATALYSIS; CHEMICAL BOND; CRYSTAL STRUCTURE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; SENSOR; STRUCTURE ACTIVITY RELATION; AMINO ACID SEQUENCE; CHEMISTRY; DIMERIZATION; METABOLISM; MOLECULAR GENETICS; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; ESCHERICHIA COLI;

AMINO ACID SEQUENCE; ARGININE; ASPARTIC ACID; BACTERIAL PROTEINS; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MAGNESIUM; MOLECULAR SEQUENCE DATA; NICKEL; PROTEIN FOLDING; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 46649120154     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M710592200     Document Type: Article

References (44)

1. Stock, A. M., Robinson, V. L., and Goudreau, P. N. (2000) Annu. Rev. Biochem. 69, 183-215
2. West, A. H., and Stock, A. M. (2001) Trends Biochem. Sci. 26, 369-376
3. Wolanin, P. M., Thomason, P. A., and Stock, J. B. (2002) Genome Biology http://genomebiology.com/2002/3/10/reviews/3013
4. Robinson, V. L., Buckler, D. R., and Stock, A. M. (2000) Nat. Struct. Biol. 7, 626-633
5. Dutta, R., Qin, L., and Inouye, M. (1999) Mol. Microbiol. 34, 633-640
6. Sanowar, S., and Le Moual, H. (2005) Biochem. J. 390, 769-776
7. Vescovi, E. G., Ayala, Y. M., DiCera, E., and Groisman, E. A. (1997) J. Biol. Chem. 272, 1440-1443
8. Vescovi, E. G., Soncini, F. C., and Groisman, E. A. (1996) Cell 84, 165-174
9. Cho, U. S., Bader, M. W., Amaya, M. F., Daley, M. E., Klevit, R. E., Miller, S. I., and Xu, W. Q. (2006) J. Mol. Biol. 356, 1193-1206
10. Zwir, I., Shin, D., Kato, A., Nishino, K., Latifi, T., Solomon, F., Hare, J. M., Huang, H., and Groisman, E. A. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 2862-2867
11. Monsieurs, P., De Keersmaecker, S., Navarre, W. W., Bader, M. W., De Smet, F., McClelland, M., Fang, F. C., De Moor, B., Vanderleyden, J., and Marchal, K. (2005) J. Mol. Evol. 60, 462-474
12. Waldburger, C. D., and Sauer, R. T. (1996) J. Biol. Chem. 271, 26630-26636
13. Doering, D. S., and Matsudaira, P. (1996) Biochemistry 35, 12677-12685
14. Regelmann, A. G., Lesley, J. A., Mott, C., Stokes, L., and Waldburger, C. D. (2002) J. Bacteriol. 184, 5468-5478
15. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
16. Bailey, S. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
17. de La Fortelle, E., and Bricogne, G. (1997) Methods Enzymol. 276, 472-494
18. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
19. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
20. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
21. Pappalardo, L., Janausch, I. G., Vijayan, V., Zientz, E., Junker, J., Peti, W., Zweckstetter, M., Unden, G., and Griesinger, C. (2003) J. Biol. Chem. 278, 39185-39188
22. Reinelt, S., Hofmann, E., Gerharz, T., Bott, M., and Madden, D. R. (2003) J. Biol. Chem. 278, 39189-39196
23. Kleywegt, G. J., and Jones, T. A. (1994) CCP4/ESF-EACBM Newsletter on Protein Crystallography 31, 9-14
24. Schneider, T. R. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 714-721
25. Schneider, T. R. (2002) Acta Crystallogr. Sect. D Biol. Crystallogr. 58, 195-208
26. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637
27. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138
28. Neiditch, M. B., Federle, M. J., Pompeani, A. J., Kelly, R. C., Swem, D. L., Jeffrey, P. D., Bassler, B. L., and Hughson, F. M. (2006) Cell 126, 1095-1108
29. Neiditch, M. B., Federle, M. J., Miller, S. T., Bassler, B. L., and Hughson, F. M. (2005) Mol. Cell 18, 507-518
30. Gu, Y. Z., Hogenesch, J. B., and Bradfield, C. A. (2000) Annu. Rev. Pharmacol. 40, 519-561
31. Genick, U. K., Borgstahl, G. E. O., Ng, K., Ren, Z., Pradervand, C., Burke, P. M., Srajer, V., Teng, T. Y., Schildkamp, W., McRee, D. E., Moffat, K., and Getzoff, E. D. (1997) Science 275, 1471-1475
32. Taylor, B. L., and Zhulin, I. B. (1999) Microbiol. Mol. Biol. Rev. 63, 479-506
33. Razeto, A., Ramakrishnan, V., Litterst, C. M., Giller, K., Griesinger, C., Carlomagno, T., Lakomek, N., Heimburg, T., Lodrini, M., Pfitzner, E., and Becker, S. (2004) J. Mol. Biol. 336, 319-329
34. Yildiz, O., Doi, M., Yujnovsky, I., Cardone, L., Berndt, A., Hennig, S., Schulze, S., Urbanke, C., Sassone-Corsi, P., and Wolf, E. (2005) Mol. Cell 17, 69-82
35. Yeh, J. I., Biemann, H. P., Prive, G. G., Pandit, J., Koshland, D. E., and Kim, S. H. (1996) J. Mol. Biol. 262, 186-201
36. Hendrickson, W. A. (1979) Acta Crystallogr. Sect. A 35, 158-163
37. Hefti, M. H., Francoijs, K. J., de Vries, S. C., Dixon, R., and Vervoort, J. (2004) Eur. J. Biochem. 271, 1198-1208
38. Minagawa, S., Okura, R., Tsuchitani, H., Hirao, K., Yamamoto, K., and Utsumi, R. (2005) Biosci. Biotech. Biochem. 69, 1281-1287
39. Gordeliy, V. I., Labahn, J., Moukhametzianov, R., Efremov, R., Granzin, J., Schlesinger, R., Buldt, G., Savopol, T., Scheidig, A. J., Klare, J. P., and Engelhard, M. (2002) Nature 419, 484-487
40. Grasberger, B., Minton, A. P., DeLisi, C., and Metzger, H. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 6258-6262
41. Kaspar, S., Perozzo, R., Reinelt, S., Meyer, M., Pfister, K., Scapozza, L., and Bott, M. (1999) Mol. Microbiol. 33, 858-872
42. Lesley, J. A., and Waldburger, C. D. (2001) J. Biol. Chem. 276, 30827-30833
43. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
44. Esnouf, R. M. (1997) J. Mol. Graph. Model. 15, 132-134