-
1
-
-
0041335297
-
Disparate oxygen responsiveness of two regulatory cascades that control expression of symbiotic genes in Bradyrhizobium japonicum
-
Sciotti, M. A., et al. (2003) Disparate oxygen responsiveness of two regulatory cascades that control expression of symbiotic genes in Bradyrhizobium japonicum, J. Bacteriol. 185 (18), 5639-5642.
-
(2003)
J. Bacteriol.
, vol.185
, Issue.18
, pp. 5639-5642
-
-
Sciotti, M.A.1
-
2
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West, A. H., and Stock, A. M. (2001) Histidine kinases and response regulator proteins in two-component signaling systems, Trends Biochem. Sci. 26 (6), 369-376.
-
(2001)
Trends Biochem. Sci.
, vol.26
, Issue.6
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
3
-
-
0026483966
-
Modular structure of the FixL protein of Rhizobium meliloti
-
de Philip, P., et al. (1992) Modular structure of the FixL protein of Rhizobium meliloti, Mol. Gen. Genet. 235 (1), 49-54.
-
(1992)
Mol. Gen. Genet.
, vol.235
, Issue.1
, pp. 49-54
-
-
De Philip, P.1
-
4
-
-
0033519628
-
Biological sensors: More than one way to sense oxygen
-
Pellequer, J. L., Brudler, R., and Getzoff, E. D. (1999) Biological sensors: More than one way to sense oxygen, Curr. Biol. 9 (11), R416-R418.
-
(1999)
Curr. Biol.
, vol.9
, Issue.11
-
-
Pellequer, J.L.1
Brudler, R.2
Getzoff, E.D.3
-
5
-
-
0029062707
-
Behavior of Rhizobium meliloti in oxygen gradients
-
Zhulin, I. B., Lois, A. F., and Taylor, B. L. (1995) Behavior of Rhizobium meliloti in oxygen gradients, FEBS Lett. 367 (2), 180-182.
-
(1995)
FEBS Lett.
, vol.367
, Issue.2
, pp. 180-182
-
-
Zhulin, I.B.1
Lois, A.F.2
Taylor, B.L.3
-
6
-
-
0026314893
-
The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development
-
Nambu, J. R., et al. (1991) The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development, Cell 67 (6), 1157-1167.
-
(1991)
Cell
, vol.67
, Issue.6
, pp. 1157-1167
-
-
Nambu, J.R.1
-
7
-
-
0027184569
-
PAS is a dimerization domain common to Drosophila period and several transcription factors
-
Huang, Z. J., Edery, I., and Rosbash, M. (1993) PAS is a dimerization domain common to Drosophila period and several transcription factors, Nature 364 (6434), 259-262.
-
(1993)
Nature
, vol.364
, Issue.6434
, pp. 259-262
-
-
Huang, Z.J.1
Edery, I.2
Rosbash, M.3
-
8
-
-
0027940414
-
Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry
-
Hoff, W. D., et al. (1994) Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry, Biochemistry 33 (47), 13959-13962.
-
(1994)
Biochemistry
, vol.33
, Issue.47
, pp. 13959-13962
-
-
Hoff, W.D.1
-
9
-
-
0025878267
-
A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti
-
Gilles-Gonzalez, M. A., Ditta, G. S., and Helinski, D. R. (1991) A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti, Nature 350 (6314), 170-172.
-
(1991)
Nature
, vol.350
, Issue.6314
, pp. 170-172
-
-
Gilles-Gonzalez, M.A.1
Ditta, G.S.2
Helinski, D.R.3
-
10
-
-
0033587744
-
LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1), binding sites for the chromophore flavin mononucleotide
-
Christie, J. M., et al. (1999) LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1), binding sites for the chromophore flavin mononucleotide, Proc. Natl. Acad. Sci. U.S.A. 96 (15), 8779-8783.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, Issue.15
, pp. 8779-8783
-
-
Christie, J.M.1
-
11
-
-
0034646392
-
Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor
-
Delgado-Nixon, V. M., Gonzalez, G., and Gilles-Gonzalez, M. A. (2000) Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor, Biochemistry 39 (10), 2685-2691.
-
(2000)
Biochemistry
, vol.39
, Issue.10
, pp. 2685-2691
-
-
Delgado-Nixon, V.M.1
Gonzalez, G.2
Gilles-Gonzalez, M.A.3
-
12
-
-
0035957226
-
Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor
-
Chang, A. L., et al. (2001) Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor, Biochemistry 40 (12), 3420-3426.
-
(2001)
Biochemistry
, vol.40
, Issue.12
, pp. 3420-3426
-
-
Chang, A.L.1
-
13
-
-
0346668332
-
NPAS2: A gas-responsive transcription factor
-
Dioum, E. M., et al. (2002) NPAS2: A gas-responsive transcription factor, Science 298 (5602), 2385-2387.
-
(2002)
Science
, vol.298
, Issue.5602
, pp. 2385-2387
-
-
Dioum, E.M.1
-
14
-
-
0027219226
-
Regulation of the kinase activity of heme protein FixL from the two-component system FixL/FixJ of Rhizobium meliloti
-
Gilles-Gonzalez, M. A., and Gonzalez, G. (1993) Regulation of the kinase activity of heme protein FixL from the two-component system FixL/FixJ of Rhizobium meliloti, J. Biol. Chem. 268 (22), 16293-16297.
-
(1993)
J. Biol. Chem.
, vol.268
, Issue.22
, pp. 16293-16297
-
-
Gilles-Gonzalez, M.A.1
Gonzalez, G.2
-
15
-
-
0028949951
-
Kinase activity of oxygen sensor FixL depends on the spin state of its heme iron
-
Gilles-Gonzalez, M. A., Gonzalez, G., and Perutz, M. F. (1995) Kinase activity of oxygen sensor FixL depends on the spin state of its heme iron, Biochemistry 34 (1), 232-236.
-
(1995)
Biochemistry
, vol.34
, Issue.1
, pp. 232-236
-
-
Gilles-Gonzalez, M.A.1
Gonzalez, G.2
Perutz, M.F.3
-
16
-
-
0037076515
-
Ligand and oxidation-state specific regulation of the heme-based oxygen sensor FixL from Sinorhizobium meliloti
-
Tuckerman, J. R., et al. (2002) Ligand and oxidation-state specific regulation of the heme-based oxygen sensor FixL from Sinorhizobium meliloti, Biochemistry 41 (19), 6170-6177.
-
(2002)
Biochemistry
, vol.41
, Issue.19
, pp. 6170-6177
-
-
Tuckerman, J.R.1
-
17
-
-
0037663697
-
A distal arginine in oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure
-
Dunham, C. M., et al. (2003) A distal arginine in oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure, Biochemistry 42 (25), 7701-7708.
-
(2003)
Biochemistry
, vol.42
, Issue.25
, pp. 7701-7708
-
-
Dunham, C.M.1
-
18
-
-
0034636144
-
New mechanistic insights from structural studies of the oxygen-sensing domain of Bradyrhizobium japonicum FixL
-
Gong, W., Hao, B., and Chan, M. K. (2000) New mechanistic insights from structural studies of the oxygen-sensing domain of Bradyrhizobium japonicum FixL, Biochemistry 39 (14), 3955-3962.
-
(2000)
Biochemistry
, vol.39
, Issue.14
, pp. 3955-3962
-
-
Gong, W.1
Hao, B.2
Chan, M.K.3
-
19
-
-
0032438105
-
Structure of a biological oxygen sensor: A new mechanism for heme-driven signal transduction
-
Gong, W., et al. (1998) Structure of a biological oxygen sensor: A new mechanism for heme-driven signal transduction, Proc. Natl. Acad. Sci. U.S.A. 95 (26), 15177-15182.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, Issue.26
, pp. 15177-15182
-
-
Gong, W.1
-
20
-
-
0037195260
-
2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum
-
2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum, Biochemistry 41 (43), 12952-12958.
-
(2002)
Biochemistry
, vol.41
, Issue.43
, pp. 12952-12958
-
-
Hao, B.1
-
21
-
-
0034636982
-
Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: Crystallographic, mutagenesis and resonance Raman spectroscopic studies
-
Miyatake, H., et al. (2000) Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: Crystallographic, mutagenesis and resonance Raman spectroscopic studies, J. Mol. Biol. 301 (2), 415-431.
-
(2000)
J. Mol. Biol.
, vol.301
, Issue.2
, pp. 415-431
-
-
Miyatake, H.1
-
22
-
-
0033229863
-
FixL, a haemoglobin that acts as an oxygen sensor: Signaling mechanism and structural basis of its homology with PAS domains
-
Perutz, M. F., Paoli, M., and Lesk, A. M. (1999) FixL, a haemoglobin that acts as an oxygen sensor: Signaling mechanism and structural basis of its homology with PAS domains, Chem. Biol. 6 (11), R291-R297.
-
(1999)
Chem. Biol.
, vol.6
, Issue.11
-
-
Perutz, M.F.1
Paoli, M.2
Lesk, A.M.3
-
23
-
-
0034649398
-
Roles of Ile209 and Ile210 on the heme pocket structure and regulation of histidine kinase activity of oxygen sensor FixL from Rhizobium meliloti
-
Mukai, M., et al. (2000) Roles of Ile209 and Ile210 on the heme pocket structure and regulation of histidine kinase activity of oxygen sensor FixL from Rhizobium meliloti, Biochemistry 39 (45), 13810-13816.
-
(2000)
Biochemistry
, vol.39
, Issue.45
, pp. 13810-13816
-
-
Mukai, M.1
-
24
-
-
0028241788
-
Heme-based sensors, exemplified by the kinase FixL, are a new class of heme protein with distinctive ligand binding and autoxidation
-
Gilles-Gonzalez, M. A., et al. (1994) Heme-based sensors, exemplified by the kinase FixL, are a new class of heme protein with distinctive ligand binding and autoxidation, Biochemistry 33 (26), 8067-8073.
-
(1994)
Biochemistry
, vol.33
, Issue.26
, pp. 8067-8073
-
-
Gilles-Gonzalez, M.A.1
-
25
-
-
0028430176
-
Optical Monitoring of Protein Crystals in Time-Resolved X-ray Experiments: Microspectrophotometer Design and Performance
-
Chen, Y., et al. (1994) Optical Monitoring of Protein Crystals in Time-Resolved X-ray Experiments: Microspectrophotometer Design and Performance, Rev. Sci. Instrum. 65 (5), 1506-1511.
-
(1994)
Rev. Sci. Instrum.
, vol.65
, Issue.5
, pp. 1506-1511
-
-
Chen, Y.1
-
26
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Macromol. Crystallogr. 276 (Part A), 307-326.
-
(1997)
Macromol. Crystallogr.
, vol.276
, Issue.PART A
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
0033081529
-
Rapid automated molecular replacement by evolutionary search
-
Kissinger, C. R., Gehlhaar, D. K., and Fogel, D. B. (1999) Rapid automated molecular replacement by evolutionary search, Acta Crystallogr. D55, 484-491.
-
(1999)
Acta Crystallogr.
, vol.D55
, pp. 484-491
-
-
Kissinger, C.R.1
Gehlhaar, D.K.2
Fogel, D.B.3
-
28
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., et al. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D54 (Part 5), 905-921.
-
(1998)
Acta Crystallogr.
, vol.D54
, Issue.5 PART
, pp. 905-921
-
-
Brunger, A.T.1
-
29
-
-
15444370282
-
A Modeling Environment for Map Interpretation
-
29-Cinf, American Chemical Society, Washington, DC
-
Jones, T. A., Zou, J. Y., and Kjeldgaard, M. (1991) A Modeling Environment for Map Interpretation, Abstracts of Papers of the American Chemical Society, Vol. 202, 29-Cinf, American Chemical Society, Washington, DC.
-
(1991)
Abstracts of Papers of the American Chemical Society
, vol.202
-
-
Jones, T.A.1
Zou, J.Y.2
Kjeldgaard, M.3
-
31
-
-
0028103275
-
The CCP4 Suite: Programs for Protein Crystallography
-
Bailey, S. (1994) The CCP4 Suite: Programs for Protein Crystallography, Acta Crystallogr. D50, 760-763.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
Bailey, S.1
-
32
-
-
0030824517
-
Ribbons: Macromolecular Crystallography
-
Carson, M. (1997) Ribbons: Macromolecular Crystallography, Methods Enzymol. 277 (Part B), 493-505.
-
(1997)
Methods Enzymol.
, vol.277
, Issue.PART B
, pp. 493-505
-
-
Carson, M.1
-
34
-
-
0017301843
-
Stereochemistry of carbonylmetalloporphyrins. The structure of (pyridine)(carbonyl)(5,10,-15,20-tetraphenylprophinato)iron(II)
-
Peng, S. M., and Ibers, J. A. (1976) Stereochemistry of carbonylmetalloporphyrins. The structure of (pyridine)(carbonyl)(5,10,-15,20- tetraphenylprophinato)iron(II), J. Am. Chem. Soc. 98 (25), 8032-8036.
-
(1976)
J. Am. Chem. Soc.
, vol.98
, Issue.25
, pp. 8032-8036
-
-
Peng, S.M.1
Ibers, J.A.2
-
35
-
-
0019876130
-
A (carbonmonoxy)heme complex with a weak proximal bond. Molecular stereochemistry of carbonyl(deuterioporphinato)(tetrahydrofuran)iron(II)
-
Scheidt, W. R., et al. (1981) A (carbonmonoxy)heme complex with a weak proximal bond. Molecular stereochemistry of carbonyl(deuterioporphinato) (tetrahydrofuran)iron(II), Biochemistry 20 (12), 3653-3657.
-
(1981)
Biochemistry
, vol.20
, Issue.12
, pp. 3653-3657
-
-
Scheidt, W.R.1
-
36
-
-
0029647452
-
Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O
-
Lim, M., Jackson, T. A., and Anfinrud, P. A. (1995) Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O, Science 269 (5226), 962-966.
-
(1995)
Science
, vol.269
, Issue.5226
, pp. 962-966
-
-
Lim, M.1
Jackson, T.A.2
Anfinrud, P.A.3
-
37
-
-
0033574735
-
A steric mechanism for inhibition of CO binding to heme proteins
-
Kachalova, G. S., Popov, A. N., and Bartunik, H. D. (1999) A steric mechanism for inhibition of CO binding to heme proteins, Science 284 (5413), 473-476.
-
(1999)
Science
, vol.284
, Issue.5413
, pp. 473-476
-
-
Kachalova, G.S.1
Popov, A.N.2
Bartunik, H.D.3
-
38
-
-
0038853525
-
Crystal structures of myoglobin-ligand complexes at near-atomic resolution
-
Vojtechovsky, J., et al. (1999) Crystal structures of myoglobin-ligand complexes at near-atomic resolution, Biophys. J. 77 (4), 2153-2174.
-
(1999)
Biophys. J.
, vol.77
, Issue.4
, pp. 2153-2174
-
-
Vojtechovsky, J.1
-
39
-
-
0033551768
-
Iron coordination structures of oxygen sensor FixL characterized by Fe K-edge extended X-ray absorption fine structure and resonance Raman spectroscopy
-
Miyatake, H., et al. (1999) Iron coordination structures of oxygen sensor FixL characterized by Fe K-edge extended X-ray absorption fine structure and resonance Raman spectroscopy, J. Biol. Chem. 274 (33), 23176-23184.
-
(1999)
J. Biol. Chem.
, vol.274
, Issue.33
, pp. 23176-23184
-
-
Miyatake, H.1
-
40
-
-
0000895319
-
Difference Fourier Technique in Protein Crystallography. Errors and Their Treatment
-
Henderso, R., and Moffat, J. K. (1971) Difference Fourier Technique in Protein Crystallography. Errors and Their Treatment, Acta Crystallogr. B27, 1414.
-
(1971)
Acta Crystallogr.
, vol.B27
, pp. 1414
-
-
Henderso, R.1
Moffat, J.K.2
-
41
-
-
0032543423
-
Identification of the hydrophobic amino acid residues required for heme assembly in the rhizobial oxygen sensor protein FixL
-
Nakamura, H., et al. (1998) Identification of the hydrophobic amino acid residues required for heme assembly in the rhizobial oxygen sensor protein FixL, Biochem. Biophys. Res. Commun. 247 (2), 427-431.
-
(1998)
Biochem. Biophys. Res. Commun.
, vol.247
, Issue.2
, pp. 427-431
-
-
Nakamura, H.1
-
42
-
-
0036774056
-
Structure and interactions of PAS kinase N-terminal PAS domain: Model for intramolecular kinase regulation
-
Amezcua, C. A., et al. (2002) Structure and interactions of PAS kinase N-terminal PAS domain: Model for intramolecular kinase regulation, Structure 10 (10), 1349-1361.
-
(2002)
Structure
, vol.10
, Issue.10
, pp. 1349-1361
-
-
Amezcua, C.A.1
-
43
-
-
0346734132
-
Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor
-
Erbel, P. J., et al. (2003) Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor, Proc. Natl. Acad. Sci. U.S.A. 100 (26), 15504-15509.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, Issue.26
, pp. 15504-15509
-
-
Erbel, P.J.1
-
44
-
-
0141707094
-
Structural basis of a phototropin light switch
-
Harper, S. M., Neil, L. C., and Gardner, K. H. (2003) Structural basis of a phototropin light switch. Science 301 (5639), 1541-1544.
-
(2003)
Science
, vol.301
, Issue.5639
, pp. 1541-1544
-
-
Harper, S.M.1
Neil, L.C.2
Gardner, K.H.3
-
45
-
-
2442624510
-
A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor
-
in press
-
Kurokawa, H., et al. (2004) A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor, J. Biol. Chem. (in press).
-
(2004)
J. Biol. Chem.
-
-
Kurokawa, H.1
-
46
-
-
1542327658
-
Insights into signal transduction involving PAS domain oxygen-sensing heme proteins from the X-ray crystal structure of Escherichia coli Dos heme domain (Ec DosH)
-
Park, H., et al. (2004) Insights into signal transduction involving PAS domain oxygen-sensing heme proteins from the X-ray crystal structure of Escherichia coli Dos heme domain (Ec DosH), Biochemistry 43 (10), 2738-2746.
-
(2004)
Biochemistry
, vol.43
, Issue.10
, pp. 2738-2746
-
-
Park, H.1
|