-
1
-
-
36949066642
-
Structure of haemoglobin: A three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis
-
Perutz, M.F., Rossmann, M.G., Cullis, A.F., Muirhead, H., Will, G. and North, A.C. (1960) Structure of haemoglobin: a three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis. Nature, 185, 416-422.
-
(1960)
Nature
, vol.185
, pp. 416-422
-
-
Perutz, M.F.1
Rossmann, M.G.2
Cullis, A.F.3
Muirhead, H.4
Will, G.5
North, A.C.6
-
2
-
-
13444279981
-
Comprehensive evaluation of protein structure alignment methods: Scoring by geometric measures
-
DOI 10.1016/j.jmb.2004.12.032
-
Kolodny, R., Koehl, P. and Levitt, M. (2005) Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J. Mol. Biol., 346, 1173-1188. (Pubitemid 40215537)
-
(2005)
Journal of Molecular Biology
, vol.346
, Issue.4
, pp. 1173-1188
-
-
Kolodny, R.1
Koehl, P.2
Levitt, M.3
-
3
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
4
-
-
58149187899
-
The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff, A.L., Sillitoe, I., Lewis, T., Redfern, O.C., Garratt, R., Thornton, J. and Orengo, C.A. (2009) The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res., 37, D310-D314.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
Redfern, O.C.4
Garratt, R.5
Thornton, J.6
Orengo, C.A.7
-
5
-
-
0346494946
-
HOMSTRAD: Recent developments of the Homologous Protein Structure Alignment Database
-
Stebbings, L.A. and Mizuguchi, K. (2004) HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. Nucleic Acids Res., 32, D203-D207. (Pubitemid 38081639)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Stebbings, L.A.1
Mizuguchi, K.2
-
6
-
-
34547596340
-
DBAli tools: Mining the protein structure space
-
Marti-Renom, M.A., Pieper, U., Madhusudhan, M.S., Rossi, A., Eswar, N., Davis, F.P., Al-Shahrour, F., Dopazo, J. and Sali, A. (2007) DBAli tools: mining the protein structure space. Nucleic Acids Res., 35, W393-W397.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Marti-Renom, M.A.1
Pieper, U.2
Madhusudhan, M.S.3
Rossi, A.4
Eswar, N.5
Davis, F.P.6
Al-Shahrour, F.7
Dopazo, J.8
Sali, A.9
-
7
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N. and Bourne, P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747. (Pubitemid 28434482)
-
(1998)
Protein Engineering
, vol.11
, Issue.9
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
8
-
-
33846653633
-
Using an alignment of fragment strings for comparing protein structures
-
DOI 10.1093/bioinformatics/btl310
-
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. and Godzik, A. (2007) Using an alignment of fragment strings for comparing protein structures. Bioinformatics, 23, e219-e224. (Pubitemid 46189660)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
-
-
Friedberg, I.1
Harder, T.2
Kolodny, R.3
Sitbon, E.4
Li, Z.5
Godzik, A.6
-
9
-
-
49549085536
-
Protein structure alignment considering phenotypic plasticity
-
Csaba, G., Birzele, F. and Zimmer, R. (2008) Protein structure alignment considering phenotypic plasticity. Bioinformatics, 24, i98-i104.
-
(2008)
Bioinformatics
, vol.24
-
-
Csaba, G.1
Birzele, F.2
Zimmer, R.3
-
10
-
-
33846108630
-
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
-
DOI 10.1093/nar/gkl809
-
Leslin, C.M., Abyzov, A. and Ilyin, V.A. (2007) TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. Nucleic Acids Res., 35, D317-D321. (Pubitemid 46056223)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Leslin, C.M.1
Abyzov, A.2
Ilyin, V.A.3
-
11
-
-
40049088786
-
Structural search and retrieval using a tableau representation of protein folding patterns
-
DOI 10.1093/bioinformatics/btm641
-
Konagurthu, A.S., Stuckey, P.J. and Lesk, A.M. (2008) Structural search and retrieval using a tableau representation of protein folding patterns. Bioinformatics, 24, 645-651. (Pubitemid 351321207)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 645-651
-
-
Konagurthu, A.S.1
Stuckey, P.J.2
Lesk, A.M.3
-
12
-
-
38649086688
-
A comprehensive analysis of non-sequential alignments between all protein structures
-
Abyzov, A. and Ilyin, V.A. (2007) A comprehensive analysis of non-sequential alignments between all protein structures. BMC Struct. Biol., 7, 78.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 78
-
-
Abyzov, A.1
Ilyin, V.A.2
-
13
-
-
33746218852
-
MUSTANG: A multiple structural alignment algorithm
-
DOI 10.1002/prot.20921
-
Konagurthu, A.S., Whisstock, J.C., Stuckey, P.J. and Lesk, A.M. (2006) MUSTANG: a multiple structural alignment algorithm. Proteins, 64, 559-574. (Pubitemid 44100724)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.64
, Issue.3
, pp. 559-574
-
-
Konagurthu, A.S.1
Whisstock, J.C.2
Stuckey, P.J.3
Lesk, A.M.4
-
14
-
-
52749091256
-
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+Strings Model
-
Veeramalai, M., Ye, Y. and Godzik, A. (2008) TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+Strings Model. BMC Bioinformatics, 9, 358.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 358
-
-
Veeramalai, M.1
Ye, Y.2
Godzik, A.3
-
15
-
-
56649103902
-
Searching protein structure databases with DaliLite v.3
-
DOI 10.1093/bioinformatics/btn507
-
Holm, L., Kaariainen, S., Rosenstrom, P. and Schenkel, A. (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics, 24, 2780-2781. (Pubitemid 352722625)
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2780-2781
-
-
Holm, L.1
Kaariainen, S.2
Rosenstrom, P.3
Schenkel, A.4
-
16
-
-
33846074754
-
SISYPHUS - Structural alignments for proteins with non-trivial relationships
-
DOI 10.1093/nar/gkl746
-
Andreeva, A., Prlic, A., Hubbard, T.J. and Murzin, A.G. (2007) SISYPHUS-structural alignments for proteins with non-trivial relationships. Nucleic Acids Res., 35, D253-D259. (Pubitemid 46056209)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Andreeva, A.1
Prlic, A.2
Hubbard, T.J.P.3
Murzin, A.G.4
-
17
-
-
0036839162
-
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
-
DOI 10.1110/ps.0215902
-
Ortiz, A.R., Strauss, C.E. and Olmea, O. (2002) MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci., 11, 2606-2621. (Pubitemid 35191136)
-
(2002)
Protein Science
, vol.11
, Issue.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
Strauss, C.E.M.2
Olmea, O.3
-
18
-
-
3242887315
-
FATCAT: A web server for flexible structure comparison and structure similarity searching
-
DOI 10.1093/nar/gkh430
-
Ye, Y. and Godzik, A. (2004) FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res., 32, W582-W585. (Pubitemid 38997402)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Ye, Y.1
Godzik, A.2
-
19
-
-
77249126602
-
Alignment of multiple protein structures based on sequence and structure features
-
Madhusudhan, M.S., Webb, B.M., Marti-Renom, M.A., Eswar, N. and Sali, A. (2009) Alignment of multiple protein structures based on sequence and structure features. Protein Eng. Des. Sel., 22, 569-574.
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 569-574
-
-
Madhusudhan, M.S.1
Webb, B.M.2
Marti-Renom, M.A.3
Eswar, N.4
Sali, A.5
-
20
-
-
66549119395
-
Advances and pitfalls of protein structural alignment
-
Hasegawa, H. and Holm, L. (2009) Advances and pitfalls of protein structural alignment. Curr. Opin. Struct. Biol., 19, 341-348.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 341-348
-
-
Hasegawa, H.1
Holm, L.2
-
21
-
-
3042533397
-
Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point
-
DOI 10.1110/ps.04672604
-
Ilyin, V.A., Abyzov, A. and Leslin, C.M. (2004) Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Sci., 13, 1865-1874. (Pubitemid 38822125)
-
(2004)
Protein Science
, vol.13
, Issue.7
, pp. 1865-1874
-
-
Ilyin, V.A.1
Abyzov, A.2
Leslin, C.M.3
-
22
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
DOI 10.1006/jmbi.1993.1489
-
Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138. (Pubitemid 23288916)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
23
-
-
0142143332
-
MASS: Multiple structural alignment by secondary structures
-
DOI 10.1093/bioinformatics/btg1012
-
Dror, O., Benyamini, H., Nussinov, R. and Wolfson, H. (2003) MASS: multiple structural alignment by secondary structures. Bioinformatics, 19(Suppl. 1), i95-i104. (Pubitemid 41185605)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
25
-
-
0027238108
-
A computer vision based technique for 3-D sequence-independent structural comparison of proteins
-
Bachar, O., Fischer, D., Nussinov, R. and Wolfson, H. (1993) A computer vision based technique for 3-D sequence-independent structural comparison of proteins. Protein Eng., 6, 279-288. (Pubitemid 23123767)
-
(1993)
Protein Engineering
, vol.6
, Issue.3
, pp. 279-288
-
-
Bachar, O.1
Fischer, D.2
Nussinov, R.3
Wolfson, H.4
-
26
-
-
63549151459
-
Cross-over between discrete and continuous protein structure space: Insights into automatic classification and networks of protein structures
-
Pascual-Garcia, A., Abia, D., Ortiz, A.R. and Bastolla, U. (2009) Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. PLoS Comput. Biol., 5, e1000331.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Pascual-Garcia, A.1
Abia, D.2
Ortiz, A.R.3
Bastolla, U.4
-
27
-
-
0035783063
-
Fold change in evolution of protein structures
-
Grishin, N.V. (2001) Fold change in evolution of protein structures. J. Struct. Biol., 134, 167-185.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 167-185
-
-
Grishin, N.V.1
-
28
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
29
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
DOI 10.1093/nar/gkm993
-
Andreeva, A., Howorth, D., Chandonia, J.M., Brenner, S.E., Hubbard, T.J., Chothia, C. and Murzin, A.G. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res., 36, D419-D425. (Pubitemid 351149760)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.-M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
30
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) CATH-a hierarchic classification of protein domain structures. Structure, 5, 1093-1108. (Pubitemid 27393093)
-
(1997)
Structure
, vol.5
, Issue.8
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
31
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
-
Lesk, A.M. and Chothia, C. (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol., 136, 225-270.
-
(1980)
J. Mol. Biol.
, vol.136
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
32
-
-
0036169142
-
LigBase: A database of families of aligned ligand binding sites in known protein sequences and structures
-
Stuart, A.C., Ilyin, V.A. and Sali, A. (2002) LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. Bioinformatics, 18, 200-201. (Pubitemid 34145052)
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 200-201
-
-
Stuart, A.C.1
Llyin, V.A.2
Sali, A.3
-
33
-
-
0030602896
-
A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique
-
DOI 10.1006/jmbi.1996.0424
-
Tsai, C.J., Lin, S.L., Wolfson, H.J. and Nussinov, R. (1996) A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. J. Mol. Biol., 260, 604-620. (Pubitemid 26254246)
-
(1996)
Journal of Molecular Biology
, vol.260
, Issue.4
, pp. 604-620
-
-
Tsai, C.-J.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
34
-
-
1842507022
-
A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
-
DOI 10.1110/ps.03484604
-
Keskin, O., Tsai, C.J., Wolfson, H. and Nussinov, R. (2004) A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. Protein Sci., 13, 1043-1055. (Pubitemid 38429226)
-
(2004)
Protein Science
, vol.13
, Issue.4
, pp. 1043-1055
-
-
Keskin, O.1
Tsai, C.-J.2
Wolfson, H.3
Nussinov, R.4
-
35
-
-
47849091218
-
Architectures and functional coverage of protein-protein interfaces
-
Tuncbag, N., Gursoy, A., Guney, E., Nussinov, R. and Keskin, O. (2008) Architectures and functional coverage of protein-protein interfaces. J. Mol. Biol., 381, 785-802.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 785-802
-
-
Tuncbag, N.1
Gursoy, A.2
Guney, E.3
Nussinov, R.4
Keskin, O.5
-
36
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
DOI 10.1006/jmbi.1993.1626
-
Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815. (Pubitemid 24007801)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
37
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
38
-
-
0017876485
-
Packing of α-helices: geometrical constraints and contact areas
-
DOI 10.1016/0022-2836(78)90201-2
-
Richmond, T.J. and Richards, F.M. (1978) Packing of alpha-helices: geometrical constraints and contact areas. J. Mol. Biol., 119, 537-555. (Pubitemid 8301120)
-
(1978)
Journal of Molecular Biology
, vol.119
, Issue.4
, pp. 537-555
-
-
Richmond, T.J.1
Richards, F.M.2
-
39
-
-
0002404088
-
On the orthogonal transformation used for structural comparisons
-
Kearsley, S.K. (1989) On the orthogonal transformation used for structural comparisons. Acta Cryst., A45, 208-210.
-
(1989)
Acta Cryst.
, vol.A45
, pp. 208-210
-
-
Kearsley, S.K.1
-
40
-
-
0035367071
-
Protein structure similarities
-
DOI 10.1016/S0959-440X(00)00214-1
-
Koehl, P. (2001) Protein structure similarities. Curr. Opin. Struct. Biol., 11, 348-353. (Pubitemid 32568277)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.3
, pp. 348-353
-
-
Koehl, P.1
-
41
-
-
0141978673
-
Comparative protein structure modeling by iterative alignment, model building and model assessment
-
DOI 10.1093/nar/gkg460
-
John, B. and Sali, A. (2003) Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res., 31, 3982-3992. (Pubitemid 37442277)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.14
, pp. 3982-3992
-
-
John, B.1
Sali, A.2
-
42
-
-
0029785147
-
Mapping the protein universe
-
Holm, L. and Sander, C. (1996) Mapping the protein universe. Science, 273, 595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
43
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm, L. and Park, J. (2000) DaliLite workbench for protein structure comparison. Bioinformatics, 16, 566-567.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
44
-
-
48249130416
-
Novel protein folds and their nonsequential structural analogs
-
Guerler, A. and Knapp, E.W. (2008) Novel protein folds and their nonsequential structural analogs. Protein Sci., 17, 1374-1382.
-
(2008)
Protein Sci.
, vol.17
, pp. 1374-1382
-
-
Guerler, A.1
Knapp, E.W.2
-
45
-
-
27544504678
-
ARTS: Alignment of RNA tertiary structures
-
DOI 10.1093/bioinformatics/bti1108
-
Dror, O., Nussinov, R. and Wolfson, H. (2005) ARTS: alignment of RNA tertiary structures. Bioinformatics, 21(Suppl. 2), ii47-ii53. (Pubitemid 41535427)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Dror, O.1
Nussinov, R.2
Wolfson, H.3
-
46
-
-
33747834668
-
The ARTS web server for aligning RNA tertiary structures
-
DOI 10.1093/nar/gkl312
-
Dror, O., Nussinov, R. and Wolfson, H.J. (2006) The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res., 34, W412-W415. (Pubitemid 44529804)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Dror, O.1
Nussinov, R.2
Wolfson, H.J.3
-
47
-
-
49549105830
-
RNA structure alignment by a unit-vector approach
-
Capriotti, E. and Marti-Renom, M.A. (2008) RNA structure alignment by a unit-vector approach. Bioinformatics, 24, i112-i118.
-
(2008)
Bioinformatics
, vol.24
-
-
Capriotti, E.1
Marti-Renom, M.A.2
-
48
-
-
67849110012
-
SARA: A server for function annotation of RNA structures
-
Capriotti, E. and Marti-Renom, M.A. (2009) SARA: a server for function annotation of RNA structures. Nucleic Acids Res., 37, W260-W265.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Capriotti, E.1
Marti-Renom, M.A.2
-
49
-
-
0036122662
-
Reliability of assessment of protein structure prediction methods
-
DOI 10.1016/S0969-2126(02)00731-1, PII S0969212602007311
-
Marti-Renom, M.A., Madhusudhan, M.S., Fiser, A., Rost, B. and Sali, A. (2002) Reliability of assessment of protein structure prediction methods. Structure, 10, 435-440. (Pubitemid 34230630)
-
(2002)
Structure
, vol.10
, Issue.3
, pp. 435-440
-
-
Marti-Renom, M.A.1
Madhusudhan, M.S.2
Fiser, A.3
Rost, B.4
Sali, A.5
-
50
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
DOI 10.1110/ps.0201402
-
Liu, Y. and Eisenberg, D. (2002) 3D domain swapping: as domains continue to swap. Protein Sci., 11, 1285-1299. (Pubitemid 34547201)
-
(2002)
Protein Science
, vol.11
, Issue.6
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
51
-
-
34447268992
-
Hinge Atlas: Relating protein sequence to sites of structural flexibility
-
Flores, S.C., Lu, L.J., Yang, J., Carriero, N. and Gerstein, M.B. (2007) Hinge Atlas: relating protein sequence to sites of structural flexibility. BMC Bioinformatics, 8, 167.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 167
-
-
Flores, S.C.1
Lu, L.J.2
Yang, J.3
Carriero, N.4
Gerstein, M.B.5
-
52
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C. and Ferrin, T.E. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem., 25, 1605-1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
53
-
-
0029738940
-
Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins
-
DOI 10.1038/nsb1096-834
-
Fujii, T., Hata, Y., Wakagi, T., Tanaka, N. and Oshima, T. (1996) Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins. Nat. Struct. Biol., 3, 834-837. (Pubitemid 26330631)
-
(1996)
Nature Structural Biology
, vol.3
, Issue.10
, pp. 834-837
-
-
Fujii, T.1
Hata, Y.2
Wakagi, T.3
Tanaka, N.4
Oshima, T.5
-
54
-
-
0034646441
-
553-ferredoxin complex
-
DOI 10.1021/bi992306s
-
Morelli, X., Dolla, A., Czjzek, M., Palma, P.N., Blasco, F., Krippahl, L., Moura, J.J. and Guerlesquin, F. (2000) Heteronuclear NMR and soft docking: an experimental approach for a structural model of the cytochrome c553-ferredoxin complex. Biochemistry, 39, 2530-2537. (Pubitemid 30148905)
-
(2000)
Biochemistry
, vol.39
, Issue.10
, pp. 2530-2537
-
-
Morelli, X.1
Dolla, A.2
Czjzek, M.3
Palma, P.N.4
Blasco, F.5
Krippahl, L.6
Moura, J.J.G.7
Guerlesquin, F.8
-
55
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
-
Pelletier, H., Sawaya, M.R., Kumar, A., Wilson, S.H. and Kraut, J. (1994) Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1891-1903.
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
56
-
-
33645984577
-
Magnesium-induced assembly of a complete DNA polymerase catalytic complex
-
Batra, V.K., Beard, W.A., Shock, D.D., Krahn, J.M., Pedersen, L.C. and Wilson, S.H. (2006) Magnesium-induced assembly of a complete DNA polymerase catalytic complex. Structure, 14, 757-766.
-
(2006)
Structure
, vol.14
, pp. 757-766
-
-
Batra, V.K.1
Beard, W.A.2
Shock, D.D.3
Krahn, J.M.4
Pedersen, L.C.5
Wilson, S.H.6
-
57
-
-
0025180337
-
Three-dimensional structure of human [113Cd7]metallothionein-2 in solution determined by nuclear magnetic resonance spectroscopy
-
Messerle, B.A., Schaffer, A., Vasak, M., Kagi, J.H. and Wuthrich, K. (1990) Three-dimensional structure of human [113Cd7]metallothionein-2 in solution determined by nuclear magnetic resonance spectroscopy. J. Mol .Biol., 214, 765-779.
-
(1990)
J. Mol .Biol.
, vol.214
, pp. 765-779
-
-
Messerle, B.A.1
Schaffer, A.2
Vasak, M.3
Kagi, J.H.4
Wuthrich, K.5
-
58
-
-
0023821870
-
Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy
-
Schultze, P., Worgotter, E., Braun, W., Wagner, G., Vasak, M., Kagi, J.H. and Wuthrich, K. (1988) Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy. J. Mol. Biol., 203, 251-268.
-
(1988)
J. Mol. Biol.
, vol.203
, pp. 251-268
-
-
Schultze, P.1
Worgotter, E.2
Braun, W.3
Wagner, G.4
Vasak, M.5
Kagi, J.H.6
Wuthrich, K.7
-
59
-
-
0037189553
-
PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site
-
DOI 10.1074/jbc.M202251200
-
Thoden, J.B., Firestine, S.M., Benkovic, S.J. and Holden, H.M. (2002) PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site. J. Biol. Chem., 277, 23898-23908. (Pubitemid 34952234)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.26
, pp. 23898-23908
-
-
Thoden, J.B.1
Firestine, S.M.2
Benkovic, S.J.3
Holden, H.M.4
-
60
-
-
20444440742
-
Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes
-
DOI 10.1111/j.1742-4658.2005.04702.x
-
LaRonde-LeBlanc, N., Guszczynski, T., Copeland, T. and Wlodawer, A. (2005) Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. FEBS J., 272, 2800-2810. (Pubitemid 40825426)
-
(2005)
FEBS Journal
, vol.272
, Issue.11
, pp. 2800-2810
-
-
LaRonde-LeBlanc, N.1
Guszczynski, T.2
Copeland, T.3
Wlodawer, A.4
-
61
-
-
0037412181
-
A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins
-
Ramakrishnan, C., Dani, V.S. and Ramasarma, T. (2002) A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins. Protein Eng., 15, 783-798. (Pubitemid 36043221)
-
(2002)
Protein Engineering
, vol.15
, Issue.10
, pp. 783-798
-
-
Ramakrishnan, C.1
Dani, V.S.2
Ramasarma, T.3
-
62
-
-
60749083913
-
ABC transporters: The power to change
-
Rees, D.C., Johnson, E. and Lewinson, O. (2009) ABC transporters: the power to change. Nat. Rev. Mol. Cell Biol., 10, 218-227.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 218-227
-
-
Rees, D.C.1
Johnson, E.2
Lewinson, O.3
-
63
-
-
33847134349
-
Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP
-
DOI 10.1016/j.febslet.2007.01.073, PII S0014579307001226
-
Dawson, R.J. and Locher, K.P. (2007) Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP. FEBS Lett., 581, 935-938. (Pubitemid 46282725)
-
(2007)
FEBS Letters
, vol.581
, Issue.5
, pp. 935-938
-
-
Dawson, R.J.P.1
Locher, K.P.2
-
64
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
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