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Volumn 39, Issue 14, 2011, Pages

Biological insights from topology independent comparison of protein 3D structures

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 79959948293     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr348     Document Type: Article
Times cited : (40)

References (64)
  • 1
    • 36949066642 scopus 로고
    • Structure of haemoglobin: A three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis
    • Perutz, M.F., Rossmann, M.G., Cullis, A.F., Muirhead, H., Will, G. and North, A.C. (1960) Structure of haemoglobin: a three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis. Nature, 185, 416-422.
    • (1960) Nature , vol.185 , pp. 416-422
    • Perutz, M.F.1    Rossmann, M.G.2    Cullis, A.F.3    Muirhead, H.4    Will, G.5    North, A.C.6
  • 2
    • 13444279981 scopus 로고    scopus 로고
    • Comprehensive evaluation of protein structure alignment methods: Scoring by geometric measures
    • DOI 10.1016/j.jmb.2004.12.032
    • Kolodny, R., Koehl, P. and Levitt, M. (2005) Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J. Mol. Biol., 346, 1173-1188. (Pubitemid 40215537)
    • (2005) Journal of Molecular Biology , vol.346 , Issue.4 , pp. 1173-1188
    • Kolodny, R.1    Koehl, P.2    Levitt, M.3
  • 3
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 4
    • 58149187899 scopus 로고    scopus 로고
    • The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
    • Cuff, A.L., Sillitoe, I., Lewis, T., Redfern, O.C., Garratt, R., Thornton, J. and Orengo, C.A. (2009) The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res., 37, D310-D314.
    • (2009) Nucleic Acids Res. , vol.37
    • Cuff, A.L.1    Sillitoe, I.2    Lewis, T.3    Redfern, O.C.4    Garratt, R.5    Thornton, J.6    Orengo, C.A.7
  • 5
    • 0346494946 scopus 로고    scopus 로고
    • HOMSTRAD: Recent developments of the Homologous Protein Structure Alignment Database
    • Stebbings, L.A. and Mizuguchi, K. (2004) HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. Nucleic Acids Res., 32, D203-D207. (Pubitemid 38081639)
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISS.
    • Stebbings, L.A.1    Mizuguchi, K.2
  • 7
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov, I.N. and Bourne, P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747. (Pubitemid 28434482)
    • (1998) Protein Engineering , vol.11 , Issue.9 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 8
    • 33846653633 scopus 로고    scopus 로고
    • Using an alignment of fragment strings for comparing protein structures
    • DOI 10.1093/bioinformatics/btl310
    • Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. and Godzik, A. (2007) Using an alignment of fragment strings for comparing protein structures. Bioinformatics, 23, e219-e224. (Pubitemid 46189660)
    • (2007) Bioinformatics , vol.23 , Issue.2
    • Friedberg, I.1    Harder, T.2    Kolodny, R.3    Sitbon, E.4    Li, Z.5    Godzik, A.6
  • 9
    • 49549085536 scopus 로고    scopus 로고
    • Protein structure alignment considering phenotypic plasticity
    • Csaba, G., Birzele, F. and Zimmer, R. (2008) Protein structure alignment considering phenotypic plasticity. Bioinformatics, 24, i98-i104.
    • (2008) Bioinformatics , vol.24
    • Csaba, G.1    Birzele, F.2    Zimmer, R.3
  • 10
    • 33846108630 scopus 로고    scopus 로고
    • TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
    • DOI 10.1093/nar/gkl809
    • Leslin, C.M., Abyzov, A. and Ilyin, V.A. (2007) TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. Nucleic Acids Res., 35, D317-D321. (Pubitemid 46056223)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Leslin, C.M.1    Abyzov, A.2    Ilyin, V.A.3
  • 11
    • 40049088786 scopus 로고    scopus 로고
    • Structural search and retrieval using a tableau representation of protein folding patterns
    • DOI 10.1093/bioinformatics/btm641
    • Konagurthu, A.S., Stuckey, P.J. and Lesk, A.M. (2008) Structural search and retrieval using a tableau representation of protein folding patterns. Bioinformatics, 24, 645-651. (Pubitemid 351321207)
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 645-651
    • Konagurthu, A.S.1    Stuckey, P.J.2    Lesk, A.M.3
  • 12
    • 38649086688 scopus 로고    scopus 로고
    • A comprehensive analysis of non-sequential alignments between all protein structures
    • Abyzov, A. and Ilyin, V.A. (2007) A comprehensive analysis of non-sequential alignments between all protein structures. BMC Struct. Biol., 7, 78.
    • (2007) BMC Struct. Biol. , vol.7 , pp. 78
    • Abyzov, A.1    Ilyin, V.A.2
  • 14
    • 52749091256 scopus 로고    scopus 로고
    • TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+Strings Model
    • Veeramalai, M., Ye, Y. and Godzik, A. (2008) TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+Strings Model. BMC Bioinformatics, 9, 358.
    • (2008) BMC Bioinformatics , vol.9 , pp. 358
    • Veeramalai, M.1    Ye, Y.2    Godzik, A.3
  • 15
    • 56649103902 scopus 로고    scopus 로고
    • Searching protein structure databases with DaliLite v.3
    • DOI 10.1093/bioinformatics/btn507
    • Holm, L., Kaariainen, S., Rosenstrom, P. and Schenkel, A. (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics, 24, 2780-2781. (Pubitemid 352722625)
    • (2008) Bioinformatics , vol.24 , Issue.23 , pp. 2780-2781
    • Holm, L.1    Kaariainen, S.2    Rosenstrom, P.3    Schenkel, A.4
  • 16
    • 33846074754 scopus 로고    scopus 로고
    • SISYPHUS - Structural alignments for proteins with non-trivial relationships
    • DOI 10.1093/nar/gkl746
    • Andreeva, A., Prlic, A., Hubbard, T.J. and Murzin, A.G. (2007) SISYPHUS-structural alignments for proteins with non-trivial relationships. Nucleic Acids Res., 35, D253-D259. (Pubitemid 46056209)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Andreeva, A.1    Prlic, A.2    Hubbard, T.J.P.3    Murzin, A.G.4
  • 17
    • 0036839162 scopus 로고    scopus 로고
    • MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
    • DOI 10.1110/ps.0215902
    • Ortiz, A.R., Strauss, C.E. and Olmea, O. (2002) MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci., 11, 2606-2621. (Pubitemid 35191136)
    • (2002) Protein Science , vol.11 , Issue.11 , pp. 2606-2621
    • Ortiz, A.R.1    Strauss, C.E.M.2    Olmea, O.3
  • 18
    • 3242887315 scopus 로고    scopus 로고
    • FATCAT: A web server for flexible structure comparison and structure similarity searching
    • DOI 10.1093/nar/gkh430
    • Ye, Y. and Godzik, A. (2004) FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res., 32, W582-W585. (Pubitemid 38997402)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Ye, Y.1    Godzik, A.2
  • 20
    • 66549119395 scopus 로고    scopus 로고
    • Advances and pitfalls of protein structural alignment
    • Hasegawa, H. and Holm, L. (2009) Advances and pitfalls of protein structural alignment. Curr. Opin. Struct. Biol., 19, 341-348.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 341-348
    • Hasegawa, H.1    Holm, L.2
  • 21
    • 3042533397 scopus 로고    scopus 로고
    • Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point
    • DOI 10.1110/ps.04672604
    • Ilyin, V.A., Abyzov, A. and Leslin, C.M. (2004) Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Sci., 13, 1865-1874. (Pubitemid 38822125)
    • (2004) Protein Science , vol.13 , Issue.7 , pp. 1865-1874
    • Ilyin, V.A.1    Abyzov, A.2    Leslin, C.M.3
  • 22
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • DOI 10.1006/jmbi.1993.1489
    • Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138. (Pubitemid 23288916)
    • (1993) Journal of Molecular Biology , vol.233 , Issue.1 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 23
    • 0142143332 scopus 로고    scopus 로고
    • MASS: Multiple structural alignment by secondary structures
    • DOI 10.1093/bioinformatics/btg1012
    • Dror, O., Benyamini, H., Nussinov, R. and Wolfson, H. (2003) MASS: multiple structural alignment by secondary structures. Bioinformatics, 19(Suppl. 1), i95-i104. (Pubitemid 41185605)
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Dror, O.1    Benyamini, H.2    Nussinov, R.3    Wolfson, H.4
  • 25
    • 0027238108 scopus 로고
    • A computer vision based technique for 3-D sequence-independent structural comparison of proteins
    • Bachar, O., Fischer, D., Nussinov, R. and Wolfson, H. (1993) A computer vision based technique for 3-D sequence-independent structural comparison of proteins. Protein Eng., 6, 279-288. (Pubitemid 23123767)
    • (1993) Protein Engineering , vol.6 , Issue.3 , pp. 279-288
    • Bachar, O.1    Fischer, D.2    Nussinov, R.3    Wolfson, H.4
  • 26
    • 63549151459 scopus 로고    scopus 로고
    • Cross-over between discrete and continuous protein structure space: Insights into automatic classification and networks of protein structures
    • Pascual-Garcia, A., Abia, D., Ortiz, A.R. and Bastolla, U. (2009) Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. PLoS Comput. Biol., 5, e1000331.
    • (2009) PLoS Comput. Biol. , vol.5
    • Pascual-Garcia, A.1    Abia, D.2    Ortiz, A.R.3    Bastolla, U.4
  • 27
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin, N.V. (2001) Fold change in evolution of protein structures. J. Struct. Biol., 134, 167-185.
    • (2001) J. Struct. Biol. , vol.134 , pp. 167-185
    • Grishin, N.V.1
  • 31
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    • Lesk, A.M. and Chothia, C. (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol., 136, 225-270.
    • (1980) J. Mol. Biol. , vol.136 , pp. 225-270
    • Lesk, A.M.1    Chothia, C.2
  • 32
    • 0036169142 scopus 로고    scopus 로고
    • LigBase: A database of families of aligned ligand binding sites in known protein sequences and structures
    • Stuart, A.C., Ilyin, V.A. and Sali, A. (2002) LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. Bioinformatics, 18, 200-201. (Pubitemid 34145052)
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 200-201
    • Stuart, A.C.1    Llyin, V.A.2    Sali, A.3
  • 33
    • 0030602896 scopus 로고    scopus 로고
    • A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique
    • DOI 10.1006/jmbi.1996.0424
    • Tsai, C.J., Lin, S.L., Wolfson, H.J. and Nussinov, R. (1996) A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. J. Mol. Biol., 260, 604-620. (Pubitemid 26254246)
    • (1996) Journal of Molecular Biology , vol.260 , Issue.4 , pp. 604-620
    • Tsai, C.-J.1    Lin, S.L.2    Wolfson, H.J.3    Nussinov, R.4
  • 34
    • 1842507022 scopus 로고    scopus 로고
    • A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
    • DOI 10.1110/ps.03484604
    • Keskin, O., Tsai, C.J., Wolfson, H. and Nussinov, R. (2004) A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. Protein Sci., 13, 1043-1055. (Pubitemid 38429226)
    • (2004) Protein Science , vol.13 , Issue.4 , pp. 1043-1055
    • Keskin, O.1    Tsai, C.-J.2    Wolfson, H.3    Nussinov, R.4
  • 35
    • 47849091218 scopus 로고    scopus 로고
    • Architectures and functional coverage of protein-protein interfaces
    • Tuncbag, N., Gursoy, A., Guney, E., Nussinov, R. and Keskin, O. (2008) Architectures and functional coverage of protein-protein interfaces. J. Mol. Biol., 381, 785-802.
    • (2008) J. Mol. Biol. , vol.381 , pp. 785-802
    • Tuncbag, N.1    Gursoy, A.2    Guney, E.3    Nussinov, R.4    Keskin, O.5
  • 36
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • DOI 10.1006/jmbi.1993.1626
    • Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815. (Pubitemid 24007801)
    • (1993) Journal of Molecular Biology , vol.234 , Issue.3 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 37
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 38
    • 0017876485 scopus 로고
    • Packing of α-helices: geometrical constraints and contact areas
    • DOI 10.1016/0022-2836(78)90201-2
    • Richmond, T.J. and Richards, F.M. (1978) Packing of alpha-helices: geometrical constraints and contact areas. J. Mol. Biol., 119, 537-555. (Pubitemid 8301120)
    • (1978) Journal of Molecular Biology , vol.119 , Issue.4 , pp. 537-555
    • Richmond, T.J.1    Richards, F.M.2
  • 39
    • 0002404088 scopus 로고
    • On the orthogonal transformation used for structural comparisons
    • Kearsley, S.K. (1989) On the orthogonal transformation used for structural comparisons. Acta Cryst., A45, 208-210.
    • (1989) Acta Cryst. , vol.A45 , pp. 208-210
    • Kearsley, S.K.1
  • 40
    • 0035367071 scopus 로고    scopus 로고
    • Protein structure similarities
    • DOI 10.1016/S0959-440X(00)00214-1
    • Koehl, P. (2001) Protein structure similarities. Curr. Opin. Struct. Biol., 11, 348-353. (Pubitemid 32568277)
    • (2001) Current Opinion in Structural Biology , vol.11 , Issue.3 , pp. 348-353
    • Koehl, P.1
  • 41
    • 0141978673 scopus 로고    scopus 로고
    • Comparative protein structure modeling by iterative alignment, model building and model assessment
    • DOI 10.1093/nar/gkg460
    • John, B. and Sali, A. (2003) Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res., 31, 3982-3992. (Pubitemid 37442277)
    • (2003) Nucleic Acids Research , vol.31 , Issue.14 , pp. 3982-3992
    • John, B.1    Sali, A.2
  • 42
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm, L. and Sander, C. (1996) Mapping the protein universe. Science, 273, 595-603.
    • (1996) Science , vol.273 , pp. 595-603
    • Holm, L.1    Sander, C.2
  • 43
    • 0033824470 scopus 로고    scopus 로고
    • DaliLite workbench for protein structure comparison
    • Holm, L. and Park, J. (2000) DaliLite workbench for protein structure comparison. Bioinformatics, 16, 566-567.
    • (2000) Bioinformatics , vol.16 , pp. 566-567
    • Holm, L.1    Park, J.2
  • 44
    • 48249130416 scopus 로고    scopus 로고
    • Novel protein folds and their nonsequential structural analogs
    • Guerler, A. and Knapp, E.W. (2008) Novel protein folds and their nonsequential structural analogs. Protein Sci., 17, 1374-1382.
    • (2008) Protein Sci. , vol.17 , pp. 1374-1382
    • Guerler, A.1    Knapp, E.W.2
  • 45
    • 27544504678 scopus 로고    scopus 로고
    • ARTS: Alignment of RNA tertiary structures
    • DOI 10.1093/bioinformatics/bti1108
    • Dror, O., Nussinov, R. and Wolfson, H. (2005) ARTS: alignment of RNA tertiary structures. Bioinformatics, 21(Suppl. 2), ii47-ii53. (Pubitemid 41535427)
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Dror, O.1    Nussinov, R.2    Wolfson, H.3
  • 46
    • 33747834668 scopus 로고    scopus 로고
    • The ARTS web server for aligning RNA tertiary structures
    • DOI 10.1093/nar/gkl312
    • Dror, O., Nussinov, R. and Wolfson, H.J. (2006) The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res., 34, W412-W415. (Pubitemid 44529804)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Dror, O.1    Nussinov, R.2    Wolfson, H.J.3
  • 47
    • 49549105830 scopus 로고    scopus 로고
    • RNA structure alignment by a unit-vector approach
    • Capriotti, E. and Marti-Renom, M.A. (2008) RNA structure alignment by a unit-vector approach. Bioinformatics, 24, i112-i118.
    • (2008) Bioinformatics , vol.24
    • Capriotti, E.1    Marti-Renom, M.A.2
  • 48
    • 67849110012 scopus 로고    scopus 로고
    • SARA: A server for function annotation of RNA structures
    • Capriotti, E. and Marti-Renom, M.A. (2009) SARA: a server for function annotation of RNA structures. Nucleic Acids Res., 37, W260-W265.
    • (2009) Nucleic Acids Res. , vol.37
    • Capriotti, E.1    Marti-Renom, M.A.2
  • 49
    • 0036122662 scopus 로고    scopus 로고
    • Reliability of assessment of protein structure prediction methods
    • DOI 10.1016/S0969-2126(02)00731-1, PII S0969212602007311
    • Marti-Renom, M.A., Madhusudhan, M.S., Fiser, A., Rost, B. and Sali, A. (2002) Reliability of assessment of protein structure prediction methods. Structure, 10, 435-440. (Pubitemid 34230630)
    • (2002) Structure , vol.10 , Issue.3 , pp. 435-440
    • Marti-Renom, M.A.1    Madhusudhan, M.S.2    Fiser, A.3    Rost, B.4    Sali, A.5
  • 50
    • 0036108484 scopus 로고    scopus 로고
    • 3D domain swapping: As domains continue to swap
    • DOI 10.1110/ps.0201402
    • Liu, Y. and Eisenberg, D. (2002) 3D domain swapping: as domains continue to swap. Protein Sci., 11, 1285-1299. (Pubitemid 34547201)
    • (2002) Protein Science , vol.11 , Issue.6 , pp. 1285-1299
    • Liu, Y.1    Eisenberg, D.2
  • 51
    • 34447268992 scopus 로고    scopus 로고
    • Hinge Atlas: Relating protein sequence to sites of structural flexibility
    • Flores, S.C., Lu, L.J., Yang, J., Carriero, N. and Gerstein, M.B. (2007) Hinge Atlas: relating protein sequence to sites of structural flexibility. BMC Bioinformatics, 8, 167.
    • (2007) BMC Bioinformatics , vol.8 , pp. 167
    • Flores, S.C.1    Lu, L.J.2    Yang, J.3    Carriero, N.4    Gerstein, M.B.5
  • 53
    • 0029738940 scopus 로고    scopus 로고
    • Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins
    • DOI 10.1038/nsb1096-834
    • Fujii, T., Hata, Y., Wakagi, T., Tanaka, N. and Oshima, T. (1996) Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins. Nat. Struct. Biol., 3, 834-837. (Pubitemid 26330631)
    • (1996) Nature Structural Biology , vol.3 , Issue.10 , pp. 834-837
    • Fujii, T.1    Hata, Y.2    Wakagi, T.3    Tanaka, N.4    Oshima, T.5
  • 55
    • 0028049441 scopus 로고
    • Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
    • Pelletier, H., Sawaya, M.R., Kumar, A., Wilson, S.H. and Kraut, J. (1994) Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1891-1903.
    • (1994) Science , vol.264 , pp. 1891-1903
    • Pelletier, H.1    Sawaya, M.R.2    Kumar, A.3    Wilson, S.H.4    Kraut, J.5
  • 57
    • 0025180337 scopus 로고
    • Three-dimensional structure of human [113Cd7]metallothionein-2 in solution determined by nuclear magnetic resonance spectroscopy
    • Messerle, B.A., Schaffer, A., Vasak, M., Kagi, J.H. and Wuthrich, K. (1990) Three-dimensional structure of human [113Cd7]metallothionein-2 in solution determined by nuclear magnetic resonance spectroscopy. J. Mol .Biol., 214, 765-779.
    • (1990) J. Mol .Biol. , vol.214 , pp. 765-779
    • Messerle, B.A.1    Schaffer, A.2    Vasak, M.3    Kagi, J.H.4    Wuthrich, K.5
  • 58
    • 0023821870 scopus 로고
    • Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy
    • Schultze, P., Worgotter, E., Braun, W., Wagner, G., Vasak, M., Kagi, J.H. and Wuthrich, K. (1988) Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy. J. Mol. Biol., 203, 251-268.
    • (1988) J. Mol. Biol. , vol.203 , pp. 251-268
    • Schultze, P.1    Worgotter, E.2    Braun, W.3    Wagner, G.4    Vasak, M.5    Kagi, J.H.6    Wuthrich, K.7
  • 59
    • 0037189553 scopus 로고    scopus 로고
    • PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site
    • DOI 10.1074/jbc.M202251200
    • Thoden, J.B., Firestine, S.M., Benkovic, S.J. and Holden, H.M. (2002) PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site. J. Biol. Chem., 277, 23898-23908. (Pubitemid 34952234)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.26 , pp. 23898-23908
    • Thoden, J.B.1    Firestine, S.M.2    Benkovic, S.J.3    Holden, H.M.4
  • 60
    • 20444440742 scopus 로고    scopus 로고
    • Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes
    • DOI 10.1111/j.1742-4658.2005.04702.x
    • LaRonde-LeBlanc, N., Guszczynski, T., Copeland, T. and Wlodawer, A. (2005) Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. FEBS J., 272, 2800-2810. (Pubitemid 40825426)
    • (2005) FEBS Journal , vol.272 , Issue.11 , pp. 2800-2810
    • LaRonde-LeBlanc, N.1    Guszczynski, T.2    Copeland, T.3    Wlodawer, A.4
  • 61
    • 0037412181 scopus 로고    scopus 로고
    • A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins
    • Ramakrishnan, C., Dani, V.S. and Ramasarma, T. (2002) A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins. Protein Eng., 15, 783-798. (Pubitemid 36043221)
    • (2002) Protein Engineering , vol.15 , Issue.10 , pp. 783-798
    • Ramakrishnan, C.1    Dani, V.S.2    Ramasarma, T.3
  • 63
    • 33847134349 scopus 로고    scopus 로고
    • Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP
    • DOI 10.1016/j.febslet.2007.01.073, PII S0014579307001226
    • Dawson, R.J. and Locher, K.P. (2007) Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP. FEBS Lett., 581, 935-938. (Pubitemid 46282725)
    • (2007) FEBS Letters , vol.581 , Issue.5 , pp. 935-938
    • Dawson, R.J.P.1    Locher, K.P.2
  • 64
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7


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