-
1
-
-
3042848954
-
Crystal structure of a self-splicing group 1 intron with both exons
-
Adams,P.L. et al. (2004) Crystal structure of a self-splicing group 1 intron with both exons. Nature, 430, 45-50.
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
-
2
-
-
0030377824
-
Protein structure alignment using dynamic programming and iterative improvement
-
Akutsu,T. (1996) Protein structure alignment using dynamic programming and iterative improvement. IEICE Trans. Inform. Syst., E79D, 1629-1636.
-
(1996)
IEICE Trans. Inform. Syst.
, vol.E79D
, pp. 1629-1636
-
-
Akutsu, T.1
-
3
-
-
0041940818
-
Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
-
Akutsu,T. (2000) Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots. Discrete Appl. Math., 104, 45-62.
-
(2000)
Discrete Appl. Math.
, vol.104
, pp. 45-62
-
-
Akutsu, T.1
-
4
-
-
0002404105
-
Discrete geometric shapes: Matching, interpolation, and approximation
-
Sack,J.-R. and Urrutia,J. (eds), Elsevier
-
Alt,H. and Guibas,L.J. (2000) Discrete geometric shapes: Matching, interpolation, and approximation. In Sack,J.-R. and Urrutia,J. (eds), Handbook of Computational Geometry. Elsevier, pp. 121-153.
-
(2000)
Handbook of Computational Geometry
, pp. 121-153
-
-
Alt, H.1
Guibas, L.J.2
-
5
-
-
84927133610
-
Computing largest common point sets under approximate congruence
-
LNCS, Springer Verlag
-
Ambühl,C., Chakraborty,S. and Gärtner,B. (2000) Computing largest common point sets under approximate congruence. In Proceedings of the 8th Annual European Symposium on Algorithms (ESA), LNCS 1879, 52-63. Springer Verlag.
-
(2000)
Proceedings of the 8th Annual European Symposium on Algorithms (ESA)
, vol.1879
, pp. 52-63
-
-
Ambühl, C.1
Chakraborty, S.2
Gärtner, B.3
-
6
-
-
0033549817
-
Tertiary motifs in RNA structure and folding
-
Batey,R. et al. (1999) Tertiary motifs in RNA structure and folding. Angew. Chem. Int. Ed. Engl., 38, 2326-2343.
-
(1999)
Angew. Chem. Int. Ed. Engl.
, vol.38
, pp. 2326-2343
-
-
Batey, R.1
-
7
-
-
0033954256
-
The protein data bank
-
Berman,H. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.1
-
8
-
-
0024206339
-
Translational regulation of the spc operon in Escherichia coli: Identification and structural analysis of the target site for S8 repressor protein
-
Cerretti,D.P. et al. (1988) Translational regulation of the spc operon in Escherichia coli: Identification and structural analysis of the target site for S8 repressor protein. J. Mol. Biol., 204, 309-325.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 309-325
-
-
Cerretti, D.P.1
-
9
-
-
0031156668
-
Identification of the universally conserved core of ribonuclease P RNA
-
Chen,J.L. and Pace,N.R. (1997) Identification of the universally conserved core of ribonuclease P RNA. RNA, 3, 557-560.
-
(1997)
RNA
, vol.3
, pp. 557-560
-
-
Chen, J.L.1
Pace, N.R.2
-
10
-
-
0003845223
-
The PyMOL molecular graphics system
-
DeLano Scientific, San Carlos, CA
-
DeLano,W. (2002) The PyMOL molecular graphics system. DeLano Scientific, San Carlos, CA.
-
(2002)
-
-
DeLano, W.1
-
11
-
-
0033757940
-
Structural genomics of RNA
-
Doudna,J.A. (2000) Structural genomics of RNA. Nat. Struct. Biol., 7 (suppl.), 954-956.
-
(2000)
Nat. Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 954-956
-
-
Doudna, J.A.1
-
12
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
Doudna,J.A. and Cech,T.R. (2002) The chemical repertoire of natural ribozymes. Nature, 418, 222-228.
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.A.1
Cech, T.R.2
-
13
-
-
0032545158
-
Stepping through an RNA structure: A novel approach to conformational analysis
-
Duarte,C.M. and Pyle,A.M. (1998) Stepping through an RNA structure: A novel approach to conformational analysis. J. Mol. Biol., 284, 1465-1478.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1465-1478
-
-
Duarte, C.M.1
Pyle, A.M.2
-
14
-
-
0344012516
-
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
-
Duarte,C.M. et al. (2003) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res., 31, 4755-4761.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4755-4761
-
-
Duarte, C.M.1
-
15
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy,S.R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet., 2, 919-929.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
16
-
-
0242333224
-
Geometry helps in bottleneck matching and related problems
-
Efrat,A. et al. (2001) Geometry helps in bottleneck matching and related problems. Algorithmica, 31, 1-28.
-
(2001)
Algorithmica
, vol.31
, pp. 1-28
-
-
Efrat, A.1
-
17
-
-
0038606979
-
Exploring the repertoire of RNA secondary motifs using graph theory with implications for RNA design
-
Gan,H.H. et al. (2003) Exploring the repertoire of RNA secondary motifs using graph theory with implications for RNA design. Nucleic Acids Res., 31, 2926-2943.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2926-2943
-
-
Gan, H.H.1
-
18
-
-
0035906639
-
Quantitative analysis of nucleic acid three-dimensional structures
-
Gendron,P. et al. (2001) Quantitative analysis of nucleic acid three-dimensional structures. J. Mol. Biol., 308, 919-936.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 919-936
-
-
Gendron, P.1
-
19
-
-
11444263264
-
Crystal structure of a phage Twort group I ribozyme-product complex
-
Golden,B.L. et al. (2005) Crystal structure of a phage Twort group I ribozyme-product complex. Nat. Struct. Mol. Biol., 12, 82-89.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
-
20
-
-
0028134556
-
Practical methods for approximate geometric pattern matching under rigid motions: (Preliminary version)
-
ACM Press, Stony Brook, New York, United States
-
Goodrich,M.T., Mitchell,J.S.B. and Orletsky,M.W. (1994) Practical methods for approximate geometric pattern matching under rigid motions: (preliminary version). In Proceedings of the 10th Annual Symposium on Computational Geometry, pp. 103-112. ACM Press, Stony Brook, New York, United States.
-
(1994)
Proceedings of the 10th Annual Symposium on Computational Geometry
, pp. 103-112
-
-
Goodrich, M.T.1
Mitchell, J.S.B.2
Orletsky, M.W.3
-
21
-
-
8644229237
-
Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site
-
Guo,F. et al. (2004) Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site. Mol. Cell, 16, 351-362.
-
(2004)
Mol. Cell
, vol.16
, pp. 351-362
-
-
Guo, F.1
-
22
-
-
0347525829
-
Representation, searching and discovery of patterns of bases in complex RNA structures
-
Harrison,A.-M. et al. (2003) Representation, searching and discovery of patterns of bases in complex RNA structures. J. Comput. Aided Mol. Des., 17, 537-549.
-
(2003)
J. Comput. Aided Mol. Des.
, vol.17
, pp. 537-549
-
-
Harrison, A.-M.1
-
23
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures (the Vienna RNA package)
-
Hofacker,I.L. et al. (1994) Fast folding and comparison of RNA secondary structures (the Vienna RNA package). Monatsh. Chem., 125, 167-188.
-
(1994)
Monatsh. Chem.
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
-
24
-
-
12944249776
-
A discussion of the solution for the best rotation to relate two sets of vectors
-
Kabsch,W. (1978) A discussion of the solution for the best rotation to relate two sets of vectors. Acta Crystallogr., A 34, 827-828.
-
(1978)
Acta Crystallogr., A
, vol.34
, pp. 827-828
-
-
Kabsch, W.1
-
25
-
-
0001277196
-
Metric properties of the root-mean-square deviation of vector sets
-
Kaindl,K. and Steipe,B. (1997) Metric properties of the root-mean-square deviation of vector sets. Acta Crystallogr., A53, 809.
-
(1997)
Acta Crystallogr.
, vol.A53
, pp. 809
-
-
Kaindl, K.1
Steipe, B.2
-
26
-
-
0037434709
-
Crystal structure of the specificity domain of ribonuclease P
-
Krasilnikov,A.S. et al. (2003) Crystal structure of the specificity domain of ribonuclease P. Nature, 13, 760-764.
-
(2003)
Nature
, vol.13
, pp. 760-764
-
-
Krasilnikov, A.S.1
-
27
-
-
6044275739
-
Basis for structural diversity in homologous RNAs
-
Krasilnikov,A.S. et al. (2004) Basis for structural diversity in homologous RNAs. Science, 1, 104-107.
-
(2004)
Science
, vol.1
, pp. 104-107
-
-
Krasilnikov, A.S.1
-
28
-
-
0029949699
-
Domain structure of the ribozyme from eubacterial ribonuclease p
-
Loria,A. and Pan,T. (1996) Domain structure of the ribozyme from eubacterial ribonuclease p. RNA, 2, 551-563.
-
(1996)
RNA
, vol.2
, pp. 551-563
-
-
Loria, A.1
Pan, T.2
-
29
-
-
0033614014
-
Resolving the discrepancies among nucleic acid conformational analyses
-
Lu,X.-J. and Olson,W.K. (1999) Resolving the discrepancies among nucleic acid conformational analyses. J. Mol. Biol., 285, 1563-1575.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1563-1575
-
-
Lu, X.-J.1
Olson, W.K.2
-
30
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu,X.-J. and Olson,W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5108-5121
-
-
Lu, X.-J.1
Olson, W.K.2
-
31
-
-
0032950260
-
Overview of nucleic acid analysis programs
-
Lu,X.-J. et al. (1999) Overview of nucleic acid analysis programs. J. Biomol. Struct. Dyn., 16, 833-843.
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 833-843
-
-
Lu, X.-J.1
-
33
-
-
2442702832
-
The structure of a ribosomal protein S8/spc operon mRNA complex
-
Merianos,H.J. et al. (2004) The structure of a ribosomal protein S8/spc operon mRNA complex. RNA, 10, 954-964.
-
(2004)
RNA
, vol.10
, pp. 954-964
-
-
Merianos, H.J.1
-
34
-
-
0032870204
-
Structural motifs in RNA
-
Moore,P.B. (1999) Structural motifs in RNA. Annu. Rev. Biochem., 68, 287-300.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
35
-
-
0028962136
-
Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme
-
Pace,N.R. and Brown,J.W. (1995) Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J. Bacteriol., 177, 1919-1928.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1919-1928
-
-
Pace, N.R.1
Brown, J.W.2
-
36
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz,G. (2002) An expanding universe of noncoding RNAs. Science, 296, 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
37
-
-
0345864010
-
SCOR: Structural classification of RNA, version 2.0
-
Tamura,M. et al. (2004) SCOR: Structural classification of RNA, version 2.0. Nucleic Acids Res., 32, D182-D184.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Tamura, M.1
-
38
-
-
10444231644
-
Condor - A distributed job scheduler
-
Sterling,T. (ed.), MIT Press
-
Tannenbaum,T., Wright,D., Miller,K. and Livny,M. (2001) Condor - a distributed job scheduler. In Sterling,T. (ed.), Beowulf Cluster Computing with Linux. MIT Press.
-
(2001)
Beowulf Cluster Computing With Linux
-
-
Tannenbaum, T.1
Wright, D.2
Miller, K.3
Livny, M.4
-
39
-
-
13544255744
-
The identification of novel RNA structural motifs using COMPADRES: An automated approach to structural discovery
-
Wadley,L.M. and Pyle,A.M. (2004) The identification of novel RNA structural motifs using COMPADRES: An automated approach to structural discovery. Nucleic Acids Res., 32, 6650-6659.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6650-6659
-
-
Wadley, L.M.1
Pyle, A.M.2
-
40
-
-
0043123152
-
Tools for the automatic identification and classification of RNA base pairs
-
Yang,H. et al. (2003) Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Res., 31, 3450-3460.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3450-3460
-
-
Yang, H.1
-
41
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
NATO ASI Series, Kluwer Academic Publishers
-
Zuker,M., Mathews,D. and Turner,D. (1999) Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In RNA Biochemistry and Biotechnology. NATO ASI Series, Kluwer Academic Publishers, pp. 11-43.
-
(1999)
RNA Biochemistry and Biotechnology
, pp. 11-43
-
-
Zuker, M.1
Mathews, D.2
Turner, D.3
|