-
1
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz,G. (2002) An expanding universe of noncoding RNAs. Science, 269, 1260-1263.
-
(2002)
Science
, vol.269
, pp. 1260-1263
-
-
Storz, G.1
-
2
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy,S.R. (2001) Non-coding RNA genes and the modern RNA world. Nature Rev. Genet., 2, 919-929.
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
3
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
Doudna,J.A. and Cech,T.R. (2002) The chemical repertoire of natural ribozymes. Nature, 418, 222-228.
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.A.1
Cech, T.R.2
-
4
-
-
18144410232
-
From structure to function: Methods and applications
-
Wolfson,H.J., Shatsky,M., Schneidman-Duhovny,D., Dror,O., Shulman-Peleg,A., Ma,B. and Nussinov,R. (2005) From structure to function: methods and applications. Curr. Protein Pept. Sci., 6, 171-183.
-
(2005)
Curr. Protein Pept. Sci.
, vol.6
, pp. 171-183
-
-
Wolfson, H.J.1
Shatsky, M.2
Schneidman-Duhovny, D.3
Dror, O.4
Shulman-Peleg, A.5
Ma, B.6
Nussinov, R.7
-
5
-
-
0034070995
-
Calculating nucleic acid secondary structure
-
Zuker,M. (2000) Calculating nucleic acid secondary structure. Curr. Opin. Struct. Biol., 10, 303-310.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 303-310
-
-
Zuker, M.1
-
6
-
-
0033549817
-
Tertiary motifs in RNA structure and folding
-
Batey,R., Rambo,R. and Doudna,J. (1999) Tertiary motifs in RNA structure and folding. Angew. Chem. Int. Ed. Engl., 38, 2326-2343.
-
(1999)
Angew. Chem. Int. Ed. Engl.
, vol.38
, pp. 2326-2343
-
-
Batey, R.1
Rambo, R.2
Doudna, J.3
-
7
-
-
0032870204
-
Structural motifs in RNA
-
Moore,P.B. (1999) Structural motifs in RNA. Annu. Rev. Biochem., 68, 287-300.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
8
-
-
0035906639
-
Quantitative analysis of nucleic acid three-dimensional structures
-
Gendron,P., Lemieuxs,S. and Major,F. (2001) Quantitative analysis of nucleic acid three-dimensional structures. J. Mol. Biol., 308, 919-936.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 919-936
-
-
Gendron, P.1
Lemieuxs, S.2
Major, F.3
-
9
-
-
0036798116
-
RNA canonical and non-canonical base pairing types: A recognition method and complete repertoire
-
Lemieux,S. and Major,F. (2002) RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire. Nucleic Acids Res., 30, 4250-4263.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4250-4263
-
-
Lemieux, S.1
Major, F.2
-
10
-
-
0043123152
-
Tools for the automatic identification and classification of RNA base pairs
-
Yang,H., Jossinet,F., Leontis,N., Chen,L., Westbrook,J., Berman,H. and Westhof,E. (2003) Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Res., 31, 3450-3460.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3450-3460
-
-
Yang, H.1
Jossinet, F.2
Leontis, N.3
Chen, L.4
Westbrook, J.5
Berman, H.6
Westhof, E.7
-
11
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu,X.-J. and Olson,W.K. (2003) 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5108-5121
-
-
Lu, X.-J.1
Olson, W.K.2
-
12
-
-
0033614014
-
Resolving the discrepancies among nucleic acid conformational analyses
-
Lu,X.-J. and Olson,W.K. (1999) Resolving the discrepancies among nucleic acid conformational analyses. J. Mol. Biol., 285, 1563-1575.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1563-1575
-
-
Lu, X.-J.1
Olson, W.K.2
-
13
-
-
0032950260
-
Overview of nucleic acid analysis programs
-
Lu,X.-J., Babcock,M. and Olson,W. (1999) Overview of nucleic acid analysis programs. J. Biomol. Struct. Dyn., 16, 833-843.
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 833-843
-
-
Lu, X.-J.1
Babcock, M.2
Olson, W.3
-
14
-
-
0035438397
-
The influence of different structure representations on the clustering of an RNA nucleotides data set
-
Reijmers,T.H., Wehrens,R. and Buydens,L.M.C. (2001) The influence of different structure representations on the clustering of an RNA nucleotides data set. J. Chem. Inf. Comput. Sci., 14, 1388-1394.
-
(2001)
J. Chem. Inf. Comput. Sci.
, vol.14
, pp. 1388-1394
-
-
Reijmers, T.H.1
Wehrens, R.2
Buydens, L.M.C.3
-
15
-
-
0344012516
-
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
-
Duarte,C.M., Wadley,L.M. and Pyle,A.M. (2003) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res., 31, 4755-4761.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4755-4761
-
-
Duarte, C.M.1
Wadley, L.M.2
Pyle, A.M.3
-
16
-
-
15444372483
-
The application of cluster analysis in the intercomparison of loop structures in RNA
-
Huang,H., Nagaswamy,U. and Fox,G.E. (2005) The application of cluster analysis in the intercomparison of loop structures in RNA. RNA, 11, 412-423.
-
(2005)
RNA
, vol.11
, pp. 412-423
-
-
Huang, H.1
Nagaswamy, U.2
Fox, G.E.3
-
17
-
-
0347525829
-
Representation, searching and discovery of patterns of bases in complex RNA structures
-
Harrison,A.-M., South,D.R., Willett,P. and Artymiuk,P.J. (2003) Representation, searching and discovery of patterns of bases in complex RNA structures. J. Comput. Aided Mol. Des., 17, 537-549.
-
(2003)
J. Comput. Aided Mol. Des.
, vol.17
, pp. 537-549
-
-
Harrison, A.-M.1
South, D.R.2
Willett, P.3
Artymiuk, P.J.4
-
18
-
-
0344011107
-
Automated identification of RNA conformational motifs: Theory and application to the HM LSU 23S rRNA
-
Hershkovitz,E., Tannenbaum,E., Howerton,S.B., Sheth,A., Tannenbaum,A. and Williams,L.D. (2003) Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA. Nucleic Acids Res., 31, 6249-6257.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6249-6257
-
-
Hershkovitz, E.1
Tannenbaum, E.2
Howerton, S.B.3
Sheth, A.4
Tannenbaum, A.5
Williams, L.D.6
-
19
-
-
13544255744
-
The identification of novel RNA structural motifs using COMPADRES: An automated approach to structural discovery
-
Wadley,L.M. and Pyle,A.M. (2004) The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery. Nucleic Acids Res., 32, 6650-6659.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6650-6659
-
-
Wadley, L.M.1
Pyle, A.M.2
-
20
-
-
27544504678
-
ARTS: Alignment of RNA tertiary structures
-
Dror,O., Nussinov,R. and Wolfson,H.J. (2005) ARTS: Alignment of RNA tertiary structures. Bioinformatics, 21, ii1-ii7.
-
(2005)
Bioinformatics
, vol.21
-
-
Dror, O.1
Nussinov, R.2
Wolfson, H.J.3
-
21
-
-
0033954256
-
The Protein Data
-
Berman,H., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T., Weissig,H., Shindyalov,I. and Bourne,P. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Bank Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
22
-
-
84927133610
-
Computing largest common point sets under approximate congruence
-
In Mike Paterson (Ed.), Saarbrücken, Germany, September 5-8, 2000, Lecture Notes in Computer Science 1879, Springer-Verlag
-
Ambühl,C., Chakraborty,S. and Gärtner,B. (2000) Computing largest common point sets under approximate congruence. In Proceedings of the Eighth Annual European Symposium on Algorithms (ESA), Mike Paterson (Ed.), Saarbrücken, Germany, September 5-8, 2000, Lecture Notes in Computer Science 1879, Springer-Verlag, pp. 52-63.
-
(2000)
Proceedings of the Eighth Annual European Symposium on Algorithms (ESA)
, pp. 52-63
-
-
Ambühl, C.1
Chakraborty, S.2
Gärtner, B.3
-
23
-
-
0030377824
-
Protein structure alignment using dynamic programming and iterative improvement
-
Akutsu,T. (1996) Protein structure alignment using dynamic programming and iterative improvement. IEICE Trans. Inform. Syst., E79D, 1629-1636.
-
(1996)
IEICE Trans. Inform. Syst.
, vol.E79D
, pp. 1629-1636
-
-
Akutsu, T.1
-
24
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams,P.L., Stahley,M.R., Kosek,A.B., Wang,J. and Strobel,S.A. (2004) Crystal structure of a self-splicing group I intron with both exons. Nature, 430, 45-50.
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
25
-
-
11444263264
-
Crystal structure of a phage Twort group I ribozyme-product complex
-
Golden,B.L., Kim,H. and Chase,E. (2005) Crystal structure of a phage Twort group I ribozyme-product complex. Nature Struct. Mol. Biol., 12, 82-89.
-
(2005)
Nature Struct. Mol. Biol.
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
Kim, H.2
Chase, E.3
-
27
-
-
0029119568
-
RasMol: Biomolecular graphics for all
-
Sayle,R. and Milner-White,E. (1995) RasMol: biomolecular graphics for all. Trends. Biochem. Sci., 20, 374-376.
-
(1995)
Trends. Biochem. Sci.
, vol.20
, pp. 374-376
-
-
Sayle, R.1
Milner-White, E.2
|