-
1
-
-
0024020848
-
A simple qualitative representation of polypeptide chain folds: Comparison of protein tertiary structures
-
Abagyan,R.A. and Maiorov,V.N. (1988) A simple qualitative representation of polypeptide chain folds: Comparison of protein tertiary structures. J. Biomol. Struct. Dyn., 5, 1267-1279.
-
(1988)
J. Biomol. Struct. Dyn
, vol.5
, pp. 1267-1279
-
-
Abagyan, R.A.1
Maiorov, V.N.2
-
2
-
-
0026951618
-
Similarity searching in databases of three-dimensional molecules and macromolecules
-
Artymiuk,P.J. et all (1992) Similarity searching in databases of three-dimensional molecules and macromolecules. J. Chem. Inf. Comput. Sci., 32, 617-630.
-
(1992)
J. Chem. Inf. Comput. Sci
, vol.32
, pp. 617-630
-
-
Artymiuk, P.J.1
et all2
-
3
-
-
0026553106
-
Three-dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase A revealed by graph-theoretical techniques
-
Artymiuk,P.J. et al. (1992) Three-dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase A revealed by graph-theoretical techniques. FEBS Lett., 303, 48-52.
-
(1992)
FEBS Lett
, vol.303
, pp. 48-52
-
-
Artymiuk, P.J.1
-
4
-
-
0003787146
-
-
Princeton University Press, Princeton, NJ
-
Bellman,R. (1957) Dynamic Programming. Princeton University Press, Princeton, NJ.
-
(1957)
Dynamic Programming
-
-
Bellman, R.1
-
6
-
-
0348129526
-
The ASTRAL compendium in 2004
-
Database issue
-
Chandonia,J.M. et al. (2004) The ASTRAL compendium in 2004. Nucleic Acids Res., 32 (Database issue).
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Chandonia, J.M.1
-
7
-
-
0027511808
-
Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm
-
Grindley,H.M. et al. (1993) Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm. J. Mol. Biol., 229, 707-721.
-
(1993)
J. Mol. Biol
, vol.229
, pp. 707-721
-
-
Grindley, H.M.1
-
8
-
-
0141840833
-
Recognizing the fold of a protein structure
-
Harrison,A. et al. (2003) Recognizing the fold of a protein structure. Bioinformatics, 19, 1748-59.
-
(2003)
Bioinformatics
, vol.19
, pp. 1748-1759
-
-
Harrison, A.1
-
9
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm,L. and Sander,C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
10
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
11
-
-
33847076452
-
Contact patterns between helices and strands of sheet define protein folding patterns
-
Kamat,A.P. and Lesk,A.M. (2007) Contact patterns between helices and strands of sheet define protein folding patterns. Proteins: Struct. Funct. Bioinform., 66, 869-876.
-
(2007)
Proteins: Struct. Funct. Bioinform
, vol.66
, pp. 869-876
-
-
Kamat, A.P.1
Lesk, A.M.2
-
12
-
-
0030016158
-
An algorithm for finding maximal common subtopologies in a set of protein structures
-
Koch,I. et al. (1996) An algorithm for finding maximal common subtopologies in a set of protein structures. J. Comput. Biol., 3, 289-306.
-
(1996)
J. Comput. Biol
, vol.3
, pp. 289-306
-
-
Koch, I.1
-
13
-
-
33746218852
-
MUSTANG: A multiple structural alignment algorithm
-
Konagurthu,A.S. et al. (2006) MUSTANG: A multiple structural alignment algorithm. Proteins. Struct. Funct. Bioinform., 64 559-574.
-
(2006)
Proteins. Struct. Funct. Bioinform
, vol.64
, pp. 559-574
-
-
Konagurthu, A.S.1
-
14
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
-
Lesk,A.M. and Chothia,C. (1980) How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins. J. Mol. Biol., 136, 225-270.
-
(1980)
J. Mol. Biol
, vol.136
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
15
-
-
0029123542
-
Systematic representation of protein folding patterns
-
Lesk,A.M. (1995) Systematic representation of protein folding patterns. J. Mol. Graphics, 13, 159-164.
-
(1995)
J. Mol. Graphics
, vol.13
, pp. 159-164
-
-
Lesk, A.M.1
-
16
-
-
0033977962
-
SCOP: A structural classification of proteins database
-
Lo Conte,L. et al. (2000) SCOP: A structural classification of proteins database. Nucleic Acids Res., 28, 257-259.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 257-259
-
-
Lo Conte, L.1
-
17
-
-
0028838717
-
Threading a database of protein cores
-
Madej,T. et al. (1995) Threading a database of protein cores. Proteins, 23, 356-369.
-
(1995)
Proteins
, vol.23
, pp. 356-369
-
-
Madej, T.1
-
18
-
-
0346494932
-
TOPS: An enhanced database of protein structural topology
-
Michalopoulos,I. et al. (2004) TOPS: An enhanced database of protein structural topology. Nucleic Acid Res., 32, D251-D254.
-
(2004)
Nucleic Acid Res
, vol.32
-
-
Michalopoulos, I.1
-
19
-
-
0029061843
-
Comparison of spatial arrangements of secondary structural elements in proteins
-
Mizuguchi,K. and Go,N. (1995) Comparison of spatial arrangements of secondary structural elements in proteins. Protein Eng., 8, 353-362.
-
(1995)
Protein Eng
, vol.8
, pp. 353-362
-
-
Mizuguchi, K.1
Go, N.2
-
20
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman,S.B. and Wunsch,C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
21
-
-
0030777303
-
CATH a hierarchic classification of protein domain structures
-
Orengo,C.A. (1997) CATH a hierarchic classification of protein domain structures. Structure, 5, 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
-
22
-
-
0025649353
-
A rapid method for protein structure alignment
-
Orengo,C.A. and Taylor,W.R. (1990) A rapid method for protein structure alignment. J. Theor. Biol., 147, 517-551.
-
(1990)
J. Theor. Biol
, vol.147
, pp. 517-551
-
-
Orengo, C.A.1
Taylor, W.R.2
-
24
-
-
40049097515
-
-
Rivest,R. (1992) The MD5 message digest algorithm, RFC 1321. MIT and RSA Data Security, Inc.
-
Rivest,R. (1992) The MD5 message digest algorithm, RFC 1321. MIT and RSA Data Security, Inc.
-
-
-
-
25
-
-
34548666167
-
A common fold mediates vertebrate defense and bacterial attack
-
Rosado,C.J. et al. (2007) A common fold mediates vertebrate defense and bacterial attack. Science, 317, 1548-1551.
-
(2007)
Science
, vol.317
, pp. 1548-1551
-
-
Rosado, C.J.1
-
26
-
-
0028373667
-
Structure-based identification and clustering of protein families and super-families
-
Rufino,S. and Blundell,T. (1994) Structure-based identification and clustering of protein families and super-families. J. Computer Aided Mol. Design, 8.
-
(1994)
J. Computer Aided Mol. Design
, vol.8
-
-
Rufino, S.1
Blundell, T.2
-
27
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
28
-
-
34447332520
-
Searching for three-dimensional secondary structural patterns in proteins with ProSMoS
-
Shi,S. et al. (2007) Searching for three-dimensional secondary structural patterns in proteins with ProSMoS. Bioinformatics, 23, 1331-1338.
-
(2007)
Bioinformatics
, vol.23
, pp. 1331-1338
-
-
Shi, S.1
|