-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel,D.P. (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
38949138481
-
Computational RNA structure prediction
-
Capriotti,E. and Marti-Renom,M.A. (2008) Computational RNA structure prediction. Curr, Bioinformatics, 3, 32-45.
-
(2008)
Curr, Bioinformatics
, vol.3
, pp. 32-45
-
-
Capriotti, E.1
Marti-Renom, M.A.2
-
4
-
-
0032728082
-
Fast detection of common geometric substructure in proteins
-
Chew,L. et al. (1999) Fast detection of common geometric substructure in proteins. J. Comput. Biol., 6, 313-325.
-
(1999)
J. Comput. Biol
, vol.6
, pp. 313-325
-
-
Chew, L.1
-
5
-
-
3242677639
-
siRNAs: Applications in functional genomics and potential as therapeutics
-
Dorsett,Y and Tuschl,T. (2004) siRNAs: Applications in functional genomics and potential as therapeutics. Nat. Rev. Drug Discov., 3, 318-329.
-
(2004)
Nat. Rev. Drug Discov
, vol.3
, pp. 318-329
-
-
Dorsett, Y.1
Tuschl, T.2
-
6
-
-
0033757940
-
Structural genomics of RNA
-
Doudna,J.A. (2000) Structural genomics of RNA. Nat. Struct. Biol., 7 (Suppl), 954-956.
-
(2000)
Nat. Struct. Biol
, vol.7
, Issue.SUPPL.
, pp. 954-956
-
-
Doudna, J.A.1
-
7
-
-
27544504678
-
ARTS: Alignment of RNA tertiary structures
-
Dror,O. et al. (2005) ARTS: Alignment of RNA tertiary structures. Bioinformatics, 21 (Suppl. 2), ii47-ii53.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Dror, O.1
-
8
-
-
33747834668
-
The ARTS web server for aligning RNA tertiary structures
-
Dror,O. et al. (2006) The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res., 34, W412-W415.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Dror, O.1
-
9
-
-
0344012516
-
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
-
Duarte,C.M. et al. (2003) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res., 31, 4755-4761.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4755-4761
-
-
Duarte, C.M.1
-
10
-
-
34547585553
-
DIAL: A web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities
-
Web Server issue, W659-W668
-
Ferre,F. et al. (2007) DIAL: A web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. Nucleic Acids Res., 35 (Web Server issue), W659-W668.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ferre, F.1
-
11
-
-
33748776559
-
Automated protein function prediction-the genomic challenge
-
Friedberg,I. (2006) Automated protein function prediction-the genomic challenge. Brief Bioinform., 7, 225-242.
-
(2006)
Brief Bioinform
, vol.7
, pp. 225-242
-
-
Friedberg, I.1
-
12
-
-
35648948885
-
Computational protein function prediction: Are we making progress?
-
Godzik,A. et al. (2007) Computational protein function prediction: are we making progress? Cell Mol. Life Sci., 64, 2505-2511.
-
(2007)
Cell Mol. Life Sci
, vol.64
, pp. 2505-2511
-
-
Godzik, A.1
-
13
-
-
0032749097
-
Unit-vector RMS (URMS) as a tool to analyze molecular dynamics trajectories
-
Kedem,K. et al. (1999) Unit-vector RMS (URMS) as a tool to analyze molecular dynamics trajectories. Proteins, 37, 554-564.
-
(1999)
Proteins
, vol.37
, pp. 554-564
-
-
Kedem, K.1
-
14
-
-
0034495586
-
ProSup: A refined tool for protein structure alignment
-
Lackner,P. et al. (2000) ProSup: A refined tool for protein structure alignment. Protein Eng., 13, 745-752.
-
(2000)
Protein Eng
, vol.13
, pp. 745-752
-
-
Lackner, P.1
-
15
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li,W. and Godzik,A. (2006) Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
16
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu,X.J. and Olson,W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5108-5121
-
-
Lu, X.J.1
Olson, W.K.2
-
17
-
-
0036122662
-
Reliability of assessment of protein structure prediction methods
-
Marti-Renom,M.A. et al. (2002) Reliability of assessment of protein structure prediction methods. Structure (Camb.), 10, 435-440.
-
(2002)
Structure (Camb.)
, vol.10
, pp. 435-440
-
-
Marti-Renom, M.A.1
-
18
-
-
0344702704
-
RNA backbone is rotameric
-
Murray,L.J. et al. (2003) RNA backbone is rotameric. Proc. Natl Acad. Sci. USA, 100, 13904-13909.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13904-13909
-
-
Murray, L.J.1
-
19
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman,S.B. and Wunsch,C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
20
-
-
0019082587
-
Fast algorithm for predicting the secondary structure of single-stranded RNA
-
Nussinov,R. and Jacobson,A.B. (1980) Fast algorithm for predicting the secondary structure of single-stranded RNA. Proc. Natl Acad Sci. USA 77, 6309-6313.
-
(1980)
Proc. Natl Acad Sci. USA
, vol.77
, pp. 6309-6313
-
-
Nussinov, R.1
Jacobson, A.B.2
-
21
-
-
0036839162
-
MAMMOTH (matching molecular models obtained from theory): An automated method for model comparison
-
Ortiz,A.R. et al. (2002) MAMMOTH (matching molecular models obtained from theory): An automated method for model comparison. Protein Sci., 11, 2606-2621.
-
(2002)
Protein Sci
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
-
22
-
-
36448954303
-
FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures
-
Sarver,M. et al. (2008) FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures. J. Math. Biol., 56, 215-252.
-
(2008)
J. Math. Biol
, vol.56
, pp. 215-252
-
-
Sarver, M.1
-
23
-
-
0033670439
-
MaxSub: An automated measure for the assessment of protein structure prediction quality
-
Siew,N. et al. (2000) MaxSub: An automated measure for the assessment of protein structure prediction quality. Bioinformatics 16, 776-785.
-
(2000)
Bioinformatics
, vol.16
, pp. 776-785
-
-
Siew, N.1
-
24
-
-
22744455135
-
Pseudoknots: RNA structures with diverse functions
-
Staple,D.W. and Butcher,S.E. (2005) Pseudoknots: RNA structures with diverse functions. PLoS Biol., 3, c213.
-
(2005)
PLoS Biol
, vol.3
-
-
Staple, D.W.1
Butcher, S.E.2
-
25
-
-
0345864010
-
-
Tamura,M. et al, 2004 SCOR: Structural Classification of RNA, version 2.0. Nucleic Acids Res, 32, D182-D184
-
Tamura,M. et al. (2004) SCOR: Structural Classification of RNA, version 2.0. Nucleic Acids Res., 32, D182-D184.
-
-
-
-
27
-
-
34548401692
-
Evaluating and learning from RNA pseudotorsional space: Quantitative validation of a reduced representation for RNA structure
-
Wadley,L.M. et al. (2007) Evaluating and learning from RNA pseudotorsional space: Quantitative validation of a reduced representation for RNA structure. J. Mol. Biol., 372, 942-957.
-
(2007)
J. Mol. Biol
, vol.372
, pp. 942-957
-
-
Wadley, L.M.1
-
28
-
-
13544255744
-
The identification of novel RNA structural motifs using COMPADRES: An automated approach to structural discovery
-
Wadley,L.M. and Pyle,A.M. (2004) The identification of novel RNA structural motifs using COMPADRES: An automated approach to structural discovery. Nucleic Acids Res., 32, 6650-6659.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6650-6659
-
-
Wadley, L.M.1
Pyle, A.M.2
-
29
-
-
0000616205
-
RNA secondary structure and their prediction
-
Zuker,M. and Sankoff,D. (1984) RNA secondary structure and their prediction. Bull. Math. Biol., 46, 591-621.
-
(1984)
Bull. Math. Biol
, vol.46
, pp. 591-621
-
-
Zuker, M.1
Sankoff, D.2
-
30
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker,M. and Stiegler,P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|