-
2
-
-
50249099816
-
Metabolic phenotyping in health and disease
-
Holmes, E.; Wilson, I.D.; Nicholson, J.K. Metabolic phenotyping in health and disease. Cell, 2008, 134, 714-717.
-
(2008)
Cell
, vol.134
, pp. 714-717
-
-
Holmes, E.1
Wilson, I.D.2
Nicholson, J.K.3
-
3
-
-
33750719994
-
Global systems biology, personalized medicine and olecular epidemiology
-
Nicholson, J.K. Global systems biology, personalized medicine and olecular epidemiology. Mol. Syst. Biol., 2006, 2, 52.
-
(2006)
Mol. Syst. Biol
, vol.2
, pp. 52
-
-
Nicholson, J.K.1
-
4
-
-
0035100888
-
Biomarkers and surrogate endpoints: Preferred definitions and conceptual framework
-
Biomarkers Definition Working Group
-
Biomarkers Definition Working Group. Biomarkers and surrogate endpoints: preferred definitions and conceptual framework. Clin. Pharmacol. Ther., 2001, 69, 89-95.
-
(2001)
Clin. Pharmacol. Ther
, vol.69
, pp. 89-95
-
-
-
5
-
-
19744374994
-
Combinatorial biomarkers: From early toxicology assays to patient population profiling
-
Koop, R. Combinatorial biomarkers: from early toxicology assays to patient population profiling. Drug Discov. Today, 2005, 10, 781-788.
-
(2005)
Drug Discov. Today
, vol.10
, pp. 781-788
-
-
Koop, R.1
-
6
-
-
58449117420
-
Metabolomics in pharmaceutical research and development: Metabolites, mechanisms and pathways
-
Xu, E.Y.; Schaefer, W.H.; Xu, Q. Metabolomics in pharmaceutical research and development: metabolites, mechanisms and pathways. Cur. Opin. Drug Discov. Dev., 2009, 12, 40-52.
-
(2009)
Cur. Opin. Drug Discov. Dev
, vol.12
, pp. 40-52
-
-
Xu, E.Y.1
Schaefer, W.H.2
Xu, Q.3
-
7
-
-
0043069547
-
Understanding global systems biology: Metabonomics and the continuum of metabolism
-
Nicholson, J.K.; Wilson, I.D. Understanding global systems biology: metabonomics and the continuum of metabolism. Nat. Rev. Drug Discov., 2003, 2, 668-676.
-
(2003)
Nat. Rev. Drug Discov
, vol.2
, pp. 668-676
-
-
Nicholson, J.K.1
Wilson, I.D.2
-
8
-
-
33646380353
-
A bioinformatician's view of the metabolome
-
Nobeli, I.; Thornton, J.M. A bioinformatician's view of the metabolome. Bioassays, 2006, 28, 534-545.
-
(2006)
Bioassays
, vol.28
, pp. 534-545
-
-
Nobeli, I.1
Thornton, J.M.2
-
9
-
-
38949209075
-
NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology
-
Coen, M.; Holmes, E.; Lindon, J.C.; Nicholson, J.K. NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology. Chem. Res. Toxicol., 2008, 21, 9-27.
-
(2008)
Chem. Res. Toxicol
, vol.21
, pp. 9-27
-
-
Coen, M.1
Holmes, E.2
Lindon, J.C.3
Nicholson, J.K.4
-
10
-
-
34548025085
-
Metabolomics: Current state and evolving methodologies and tools
-
Oldiges, M.; Lütz, S.; Pflug, S.; Schroer, K.; Stein, N.; Wiendahl, C. Metabolomics: current state and evolving methodologies and tools. Appl. Microbiol. Biotechnol., 2007, 76, 495-511.
-
(2007)
Appl. Microbiol. Biotechnol
, vol.76
, pp. 495-511
-
-
Oldiges, M.1
Lütz, S.2
Pflug, S.3
Schroer, K.4
Stein, N.5
Wiendahl, C.6
-
11
-
-
58149341281
-
MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
-
Xia, J.; Bjorndahl, T.C.; Tang, P.; Wishart, D.S. MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids. BMC Bioinformatics, 2008, 28, 507.
-
(2008)
BMC Bioinformatics
, vol.28
, pp. 507
-
-
Xia, J.1
Bjorndahl, T.C.2
Tang, P.3
Wishart, D.S.4
-
12
-
-
67650738927
-
Integrative normalization and comparative analysis for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry
-
Almstetter, M.F.; Appel, I.J.; Gruber, M.A.; Lottaz, C.; Timischl, B.; Spang, R.; Dettmer, K.; Oefner, P.J. Integrative normalization and comparative analysis for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Anal. Chem., 2009, 81, 5731-5739.
-
(2009)
Anal. Chem
, vol.81
, pp. 5731-5739
-
-
Almstetter, M.F.1
Appel, I.J.2
Gruber, M.A.3
Lottaz, C.4
Timischl, B.5
Spang, R.6
Dettmer, K.7
Oefner, P.J.8
-
14
-
-
70449436059
-
Assessment of metabolome annotation quality: A method for evaluating the false discovery rate of elemental composition searches
-
Matsuda, F.; Shinbo, Y.; Oikawa, A.; Hirai, M.Y.; Fiehn, O.; Ka-naya, S.; Saito, K. Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS One, 2009, 16, e7490.
-
(2009)
PLoS One
, vol.e7490
, pp. 16
-
-
Matsuda, F.1
Shinbo, Y.2
Oikawa, A.3
Hirai, M.Y.4
Fiehn, O.5
Ka-Naya, S.6
Saito, K.7
-
15
-
-
84882439606
-
The Role of Metabolomics in the Study of Kidney Diseases and in the Development of Diagnostic Tools
-
Edel-stein CL Eds. San Diego: Elsevier
-
Christians, U.; Albuisson, J.; Klawitter, J.; Klawitter, J. The Role of Metabolomics in the Study of Kidney Diseases and in the Development of Diagnostic Tools. Biomarkers of Kidney Disease. Edel-stein CL Eds. San Diego: Elsevier, 2011.
-
(2011)
Biomarkers of Kidney Disease
-
-
Christians, U.1
Albuisson, J.2
Klawitter, J.3
Klawitter, J.4
-
16
-
-
77954507406
-
Toxicodynamic effects of ciclosporin are reflected by metabolite profiles in the urine of healthy individuals after a single dose
-
Klawitter, J.; Haschke, M.; Kahle, C.; Dingmann, C.; Klawitter, J.; Leibfritz, D.; Christians, U. Toxicodynamic effects of ciclosporin are reflected by metabolite profiles in the urine of healthy individuals after a single dose. Br. J. Clin. Pharmacol., 2010, 70, 241-251.
-
(2010)
Br. J. Clin. Pharmacol
, vol.70
, pp. 241-251
-
-
Klawitter, J.1
Haschke, M.2
Kahle, C.3
Dingmann, C.4
Klawitter, J.5
Leibfritz, D.6
Christians, U.7
-
17
-
-
33846000626
-
Mass spectrometry-based metabolomics
-
Dettmer, K.; Aronov, P.A.; Hammock, B.D. Mass spectrometry-based metabolomics. Mass. Spectrom. Rev., 2007, 26, 51-78.
-
(2007)
Mass. Spectrom. Rev
, vol.26
, pp. 51-78
-
-
Dettmer, K.1
Aronov, P.A.2
Hammock, B.D.3
-
18
-
-
52049108458
-
Metabolomics-based methods for early disease diagnostics
-
Gowda, G.A.; Zhang, S.; Gu, H.; Asiago, V.; Shanaiah, N.; Raftery, D. Metabolomics-based methods for early disease diagnostics. Expert Rev. Mol. Diagn., 2008, 8, 617-633.
-
(2008)
Expert Rev. Mol. Diagn
, vol.8
, pp. 617-633
-
-
Gowda, G.A.1
Zhang, S.2
Gu, H.3
Asiago, V.4
Shanaiah, N.5
Raftery, D.6
-
19
-
-
33847377098
-
From exogenous to endogenous: The inevitable imprint of mass spectrometry in metabolomics
-
Want, E.J.; Nordström, A.; Morita, H.; Siuzdak, G. From exogenous to endogenous: the inevitable imprint of mass spectrometry in metabolomics. J. Proteome Res., 2007, 6, 459-468.
-
(2007)
J. Proteome Res
, vol.6
, pp. 459-468
-
-
Want, E.J.1
Nordström, A.2
Morita, H.3
Siuzdak, G.4
-
20
-
-
34249890793
-
Metabolomics as a complementary tool in cell culture
-
Khoo, S.H.; Al-Rubeai, M. Metabolomics as a complementary tool in cell culture, Biotechnol. Appl. Biochem., 2007, 47(Pt 2), 71-84.
-
(2007)
Biotechnol. Appl. Biochem
, vol.47
, Issue.Pt 2
, pp. 71-84
-
-
Khoo, S.H.1
Al-Rubeai, M.2
-
21
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn, O.; Kopka, J.; Dörmann, P.; Altmann, T.; Trethewey, R.N.; Willmitzer, L. Metabolite profiling for plant functional genomics. Nat. Biotechnol., 2000, 18, 1157-1161.
-
(2000)
Nat. Biotechnol
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dörmann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
22
-
-
33750453370
-
Monitoring the health to disease continuum with global metabolic profiling and systems biology
-
Schnackenberg, L.K.; Beger, R.D. Monitoring the health to disease continuum with global metabolic profiling and systems biology. Pharmacogenomics, 2006, 7, 1077-1086.
-
(2006)
Pharmacogenomics
, vol.7
, pp. 1077-1086
-
-
Schnackenberg, L.K.1
Beger, R.D.2
-
23
-
-
48849114188
-
Gas chromatography/ mass spectrometry in metabolic profiling of biological fluids
-
Pasikanti, K.K.; Ho, P.C.; Chan, E.C. Gas chromatography/ mass spectrometry in metabolic profiling of biological fluids. J. Chroma-togr. B. Analyt. Technol. Biomed. Life Sci., 2008, 871, 202-211.
-
(2008)
J. Chroma-togr. B. Analyt. Technol. Biomed. Life Sci
, vol.871
, pp. 202-211
-
-
Pasikanti, K.K.1
Ho, P.C.2
Chan, E.C.3
-
24
-
-
0017780771
-
Complete mass spectra of N-trifluoroacetyl-n-butyl esters of amino acids
-
Leimer, K.R.; Rice, R.H.; Gehrke, C.W. Complete mass spectra of N-trifluoroacetyl-n-butyl esters of amino acids. J. Chromatogr., 1977, 141, 121-144.
-
(1977)
J. Chromatogr
, vol.141
, pp. 121-144
-
-
Leimer, K.R.1
Rice, R.H.2
Gehrke, C.W.3
-
25
-
-
0036384102
-
NMR-based metabolomics
-
Reo, N.V. NMR-based metabolomics. Drug Chem. Toxicol., 2002, 25, 375-382.
-
(2002)
Drug Chem. Toxicol
, vol.25
, pp. 375-382
-
-
Reo, N.V.1
-
26
-
-
33846109344
-
Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics
-
Pan, Z.; Raftery, D. Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics. Anal. Bioanal. Chem., 2007, 387, 525-527.
-
(2007)
Anal. Bioanal. Chem
, vol.387
, pp. 525-527
-
-
Pan, Z.1
Raftery, D.2
-
27
-
-
20844461344
-
1H-NMR-based metabolic signatures of mild and severe ische-mia/reperfusion injury in rat kidney transplants
-
1H-NMR-based metabolic signatures of mild and severe ische-mia/reperfusion injury in rat kidney transplants. Kidney. Int., 2005, 67, 1142-1151.
-
(2005)
Kidney. Int
, vol.67
, pp. 1142-1151
-
-
Serkova, N.1
Fuller, T.F.2
Klawitter, J.3
Freise, C.E.4
Niemann, C.U.5
-
28
-
-
58149341281
-
MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
-
Xia, J.; Bjorndahl, T.C.; Tang, P.; Wishart, D.S. MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids. BMC Bioinformatics, 2008, 28, 507.
-
(2008)
BMC Bioinformatics
, vol.28
, pp. 507
-
-
Xia, J.1
Bjorndahl, T.C.2
Tang, P.3
Wishart, D.S.4
-
29
-
-
32444451016
-
Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry
-
Want, E.J.; O'Maille, G.; Smith, C.A.; Brandon, T.R.; Uritboonthai, W.; Qin, C.; Trauger, S.A.; Siuzdak, G. Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. Anal Chem., 2006, 78, 743-752.
-
(2006)
Anal Chem
, vol.78
, pp. 743-752
-
-
Want, E.J.1
O'Maille, G.2
Smith, C.A.3
Brandon, T.R.4
Uritboonthai, W.5
Qin, C.6
Trauger, S.A.7
Siuzdak, G.8
-
30
-
-
38349103941
-
Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics
-
Nordström, A.; Want, E.; Northen, T.; Lehtiö, J.; Siuzdak, G. Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics. Anal. Chem., 2008, 80, 421-429.
-
(2008)
Anal. Chem
, vol.80
, pp. 421-429
-
-
Nordström, A.1
Want, E.2
Northen, T.3
Lehtiö, J.4
Siuzdak, G.5
-
31
-
-
0038574979
-
Ion suppression in mass spectrometry
-
Annesley, T.M. Ion suppression in mass spectrometry. Clin. Chem., 2007, 49, 1041-1044.
-
(2007)
Clin. Chem
, vol.49
, pp. 1041-1044
-
-
Annesley, T.M.1
-
32
-
-
18844406001
-
Measuring the me-tabolome: Current analytical technologies
-
Dunn, W.B.; Bailey, N.J.; Johnson, H.E. Measuring the me-tabolome: current analytical technologies. Analyst, 2005, 130, 606-625.
-
(2005)
Analyst
, vol.130
, pp. 606-625
-
-
Dunn, W.B.1
Bailey, N.J.2
Johnson, H.E.3
-
33
-
-
27944492417
-
Controlled protein precipitation in combination with chip-based nanospray infusion mass spectrometry. An approach for metabolomics profiling of plasma
-
Boernsen, K.O.; Gatzek, S.; Imbert, G. Controlled protein precipitation in combination with chip-based nanospray infusion mass spectrometry. An approach for metabolomics profiling of plasma. Anal. Chem., 2005, 77, 7255-7264.
-
(2005)
Anal. Chem
, vol.77
, pp. 7255-7264
-
-
Boernsen, K.O.1
Gatzek, S.2
Imbert, G.3
-
34
-
-
0022868951
-
Chemometrics: An overview
-
Deming, S.N. Chemometrics: an overview. Clin. Chem., 1986, 32, 1702-1706.
-
(1986)
Clin. Chem
, vol.32
, pp. 1702-1706
-
-
Deming, S.N.1
-
35
-
-
77949417518
-
Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxic-ity and nephrotoxicity
-
Beger, R.D.; Sun, J.; Schnackenberg, L.K. Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxic-ity and nephrotoxicity. Toxicol. Appl. Pharmacol., 2010, 243, 154-166.
-
(2010)
Toxicol. Appl. Pharmacol
, vol.243
, pp. 154-166
-
-
Beger, R.D.1
Sun, J.2
Schnackenberg, L.K.3
-
36
-
-
75649113424
-
Computational approaches to metabolomics
-
Wishart, D.S. Computational approaches to metabolomics. Methods Mol. Biol., 2010, 593, 283-313.
-
(2010)
Methods Mol. Biol
, vol.593
, pp. 283-313
-
-
Wishart, D.S.1
-
37
-
-
33746819836
-
Metabolomic approaches to phenotype characterization and applications to complex diseases
-
Oresic, M.; Vidal-Puig, A; Hänninen, V. Metabolomic approaches to phenotype characterization and applications to complex diseases. Expert Rev. Mol. Diagn., 2006, 6, 575-585.
-
(2006)
Expert Rev. Mol. Diagn
, vol.6
, pp. 575-585
-
-
Oresic, M.1
Vidal-Puig, A.2
Hänninen, V.3
-
38
-
-
70149092076
-
Analytical and statistical approaches to metabolomics research
-
Issaq, H.J.; Van, Q.N.; Waybright, T.J.; Muschik, G.M.; Veenstra, T.D. Analytical and statistical approaches to metabolomics research, J. Sep. Sci., 2009, 32, 2183-2199.
-
(2009)
J. Sep. Sci
, vol.32
, pp. 2183-2199
-
-
Issaq, H.J.1
Van, Q.N.2
Waybright, T.J.3
Muschik, G.M.4
Veenstra, T.D.5
-
39
-
-
36348980985
-
Current progress in computational metabolomics
-
Wishart, D.S. Current progress in computational metabolomics. Brief Bioinform., 2007, 8, 279-293.
-
(2007)
Brief Bioinform
, vol.8
, pp. 279-293
-
-
Wishart, D.S.1
-
40
-
-
41149162296
-
Me-tabolomics: A global biochemical approach to drug response and disease
-
Kaddurah-Daouk, R.; Kristal, B.S.; Weinshilboum, R.M. Me-tabolomics: a global biochemical approach to drug response and disease. Annu. Rev. Pharmacol. Toxicol., 2008, 48, 653-683.
-
(2008)
Annu. Rev. Pharmacol. Toxicol
, vol.48
, pp. 653-683
-
-
Kaddurah-Daouk, R.1
Kristal, B.S.2
Weinshilboum, R.M.3
-
41
-
-
34547844156
-
Manual curation is not sufficient for annotation of genomic databases
-
Baumgartner, W.A. Jr.; Cohen, K.B.; Fox, L.M.; Acquaah-Mensah, G.; Hunter, L. Manual curation is not sufficient for annotation of genomic databases. Bioinformatics, 2007, 23, i41-i48.
-
(2007)
Bioinformatics
, vol.23
-
-
Baumgartner Jr., W.A.1
Cohen, K.B.2
Fox, L.M.3
Acquaah-Mensah, G.4
Hunter, L.5
-
42
-
-
65949121177
-
Systems biology approaches and pathway tools for investigating cardiovascular disease
-
Wheelock, C.E.; Wheelock, A.M.; Kawashima, S.; Diez, D.; Kane-hisa, M.; van Erk, M.; Kleemann, R.; Haeggström, J.Z.; Goto, S. Systems biology approaches and pathway tools for investigating cardiovascular disease. Mol. Biosyst., 2009, 5, 588-602.
-
(2009)
Mol. Biosyst
, vol.5
, pp. 588-602
-
-
Wheelock, C.E.1
Wheelock, A.M.2
Kawashima, S.3
Diez, D.4
Kane-Hisa, M.5
van Erk, M.6
Kleemann, R.7
Haeggström, J.Z.8
Goto, S.9
-
43
-
-
43749083043
-
Introduction to cheminformatics
-
Chapter 14, Unit 14.1
-
Wishart, D.S. Introduction to cheminformatics. Curr. Protoc. Bio-informatics, 2007, Chapter 14, Unit 14.1.
-
(2007)
Curr. Protoc. Bio-informatics
-
-
Wishart, D.S.1
-
44
-
-
33947507091
-
Computational systems biology in drug discovery and development: Methods and applications
-
Materi, W.; Wishart, D.S. Computational systems biology in drug discovery and development: methods and applications. Drug Dis-cov. Today, 2007, 12, 295-303.
-
(2007)
Drug Dis-cov. Today
, vol.12
, pp. 295-303
-
-
Materi, W.1
Wishart, D.S.2
-
45
-
-
63749097353
-
Biomedi-cal discovery acceleration, with applications to craniofacial development
-
Leach, S.M.; Tipney, H.; Feng, W.; Baumgartner, W.A.; Kasliwal, P.; Schuyler, R.P.; Williams, T.; Spritz, R.A.; Hunter, L. Biomedi-cal discovery acceleration, with applications to craniofacial development. PLoS Comput. Biol., 2009, 5, e1000215.
-
(2009)
PLoS Comput. Biol
, vol.5
-
-
Leach, S.M.1
Tipney, H.2
Feng, W.3
Baumgartner, W.A.4
Kasliwal, P.5
Schuyler, R.P.6
Williams, T.7
Spritz, R.A.8
Hunter, L.9
-
46
-
-
58149202163
-
HMDB: A knowledgebase for the human metabolome. Nucl
-
(Database issue)
-
Wishart, D.S.; Knox, C.; Guo, A.C.; Eisner, R.; Young, N.; Gautam, B.; Hau, D.D.; Psychogios, N.; Dong, E.; Bouatra, S.; Mandal, R.; Sinelnikov, I.; Xia, J.; Jia, L.; Cruz, J.A.; Lim, E.; Sob-sey, C.A.; Shrivastava, S., Huang, P., Liu, P., Fang, L., Peng, J., Fradette, R.; Cheng, D.; Tzur, D.; Clements, M.; Lewis, A.; De Souza, A.; Zuniga, A.; Dawe, M.; Xiong, Y.; Clive, D.; Greiner, R.; Nazyrova, A.; Shaykhutdinov, R.; Li, L.; Vogel, H.J.; Forsythe, I. HMDB: a knowledgebase for the human metabolome. Nucl. Acids Res., 2009, 37 (Database issue), D603-D610.
-
(2009)
Acids Res
, vol.37
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Eisner, R.4
Young, N.5
Gautam, B.6
Hau, D.D.7
Psychogios, N.8
Dong, E.9
Bouatra, S.10
Mandal, R.11
Sinelnikov, I.12
Xia, J.13
Jia, L.14
Cruz, J.A.15
Lim, E.16
Sob-Sey, C.A.17
Shrivastava, S.18
Huang, P.19
Liu, P.20
Fang, L.21
Peng, J.22
Fradette, R.23
Cheng, D.24
Tzur, D.25
Clements, M.26
Lewis, A.27
de Souza, A.28
Zuniga, A.29
Dawe, M.30
Xiong, Y.31
Clive, D.32
Greiner, R.33
Nazyrova, A.34
Shaykhutdinov, R.35
Li, L.36
Vogel, H.J.37
Forsythe, I.38
more..
-
47
-
-
70249111877
-
Tissue-specific, non-invasive toxicity biomarkers: Translation from preclinical safety assessment to clinical safety monitoring
-
Müller, P.Y.; Dieterle, F. Tissue-specific, non-invasive toxicity biomarkers: translation from preclinical safety assessment to clinical safety monitoring. Expert Opin. Drug Metab. Toxicol., 2009, 5, 1023-1038.
-
(2009)
Expert Opin. Drug Metab. Toxicol
, vol.5
, pp. 1023-1038
-
-
Müller, P.Y.1
Dieterle, F.2
-
48
-
-
33845205234
-
Biomarker assay translation from discovery to clinical studies in cancer drug development: Quantification of emerging protein biomarkers
-
Lee, J.W.; Figeys, D.; Vasilescu, J. Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers. Adv. Cancer Res., 2007, 96, 269-298.
-
(2007)
Adv. Cancer Res
, vol.96
, pp. 269-298
-
-
Lee, J.W.1
Figeys, D.2
Vasilescu, J.3
-
49
-
-
38149127170
-
Qualification of biomarkers for drug development in organ transplantation
-
Burckart, G.J.; Amur, S.; Goodsaid, F.M.; Lesko, L.J.; Frueh, F.W.; Huang, S.M.; Cavaille-Coll, M.W. Qualification of biomarkers for drug development in organ transplantation. Am. J. Transplant., 2008, 8, 267-270.
-
(2008)
Am. J. Transplant
, vol.8
, pp. 267-270
-
-
Burckart, G.J.1
Amur, S.2
Goodsaid, F.M.3
Lesko, L.J.4
Frueh, F.W.5
Huang, S.M.6
Cavaille-Coll, M.W.7
-
50
-
-
33845974419
-
Biomarkers and surrogate end points for fit-for-purpose development and regulatory evaluation of new drugs
-
Wagner, J.A.; Williams, S.A.; Webster, C.J. Biomarkers and surrogate end points for fit-for-purpose development and regulatory evaluation of new drugs. Clin. Pharmacol. Ther., 2007, 81, 104-107.
-
(2007)
Clin. Pharmacol. Ther
, vol.81
, pp. 104-107
-
-
Wagner, J.A.1
Williams, S.A.2
Webster, C.J.3
-
51
-
-
0035037328
-
Use of biomarkers and surrogate endpoints in drug development and regulatory decision making: Criteria, validation, strategies
-
Lesko, L.J.; Atkinson, A.J. Jr. Use of biomarkers and surrogate endpoints in drug development and regulatory decision making: criteria, validation, strategies. Annu. Rev. Pharmacol. Toxicol., 2001, 41, 347-366.
-
(2001)
Annu. Rev. Pharmacol. Toxicol
, vol.41
, pp. 347-366
-
-
Lesko, L.J.1
Atkinson Jr., A.J.2
-
52
-
-
39749134121
-
Strategic paths for biomarker qualification
-
Goodsaid FM; Frueh FW; Mattes W. Strategic paths for biomarker qualification. Toxicology, 2008, 245, 219-223.
-
(2008)
Toxicology
, vol.245
, pp. 219-223
-
-
Goodsaid, F.M.1
Frueh, F.W.2
Mattes, W.3
-
53
-
-
34047177929
-
Biomarker qualification pilot process at the US Food and Drug Administration
-
Goodsaid, F.; Frueh, F. Biomarker qualification pilot process at the US Food and Drug Administration. AAPS J., 2007, 23, E105-E108.
-
(2007)
AAPS J
, vol.23
-
-
Goodsaid, F.1
Frueh, F.2
-
54
-
-
34347330024
-
Implementing the US FDA guidance on pharmacogenomic data submissions
-
Goodsaid, F.; Frueh, F. Implementing the US FDA guidance on pharmacogenomic data submissions. Environ. Mol. Mutagen., 2007, 48, 354-358.
-
(2007)
Environ. Mol. Mutagen
, vol.48
, pp. 354-358
-
-
Goodsaid, F.1
Frueh, F.2
-
55
-
-
33747190312
-
Process map proposal for the validation of genomic biomarkers
-
Goodsaid, F.; Frueh, F. Process map proposal for the validation of genomic biomarkers. Pharmacogenomics, 2006, 7, 773-782.
-
(2006)
Pharmacogenomics
, vol.7
, pp. 773-782
-
-
Goodsaid, F.1
Frueh, F.2
-
56
-
-
33747030845
-
Protein biomarker discovery and validation: The long and uncertain path to clinical utility
-
Rifai, N.; Gillette, M.A.; Carr, S.A. Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nat. Biotechnol., 2006, 24, 971-983.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
57
-
-
33644828213
-
Metabolomics: The principles and potential applications to transplantation
-
Wishart, D.S. Metabolomics: the principles and potential applications to transplantation. Am. J. Transplant., 2005, 5, 2814-2820.
-
(2005)
Am. J. Transplant
, vol.5
, pp. 2814-2820
-
-
Wishart, D.S.1
-
58
-
-
68949157005
-
Mass spectrometry: From proteomics to metabolomics and lipidomics
-
Griffiths, W.J.; Wang, Y. Mass spectrometry: from proteomics to metabolomics and lipidomics, Chem. Soc. Rev., 2009, 38, 1882-1896.
-
(2009)
Chem. Soc. Rev
, vol.38
, pp. 1882-1896
-
-
Griffiths, W.J.1
Wang, Y.2
-
59
-
-
48849114188
-
Gas chromatography/ mass spectrometry in metabolic profiling of biological fluids
-
Pasikanti, K.K.; Ho, P.C.; Chan, E.C. Gas chromatography/ mass spectrometry in metabolic profiling of biological fluids. J. Chroma-togr. B. Analyt. Technol. Biomed. Life Sci., 2008, 871, 202-211.
-
(2008)
J. Chroma-togr. B. Analyt. Technol. Biomed. Life Sci
, vol.871
, pp. 202-211
-
-
Pasikanti, K.K.1
Ho, P.C.2
Chan, E.C.3
-
60
-
-
0002301232
-
Metabonomic applications in toxicity screening and disease diagnostics
-
Shockcor JP; Holmes E. Metabonomic applications in toxicity screening and disease diagnostics. Cur. Top. Med. Chem., 2002, 2, 35-51.
-
(2002)
Cur. Top. Med. Chem
, vol.2
, pp. 35-51
-
-
Shockcor, J.P.1
Holmes, E.2
-
61
-
-
7344256122
-
1H NMR spectroscopy of urine combined with pattern recognition
-
1H NMR spectroscopy of urine combined with pattern recognition. NMR Biomed., 1998, 11, 235-244.
-
(1998)
NMR Biomed
, vol.11
, pp. 235-244
-
-
Holmes, E.1
Nicholls, A.W.2
Lindon, J.C.3
Ramos, S.4
Spraul, M.5
Neidig, P.6
Connor, S.C.7
Connelly, J.8
Damment, S.J.9
Haselden, J.10
Nicholson, J.K.11
-
62
-
-
10444273269
-
D-serine nephrotoxicity: A HPLC-TOF/MS-based metabonomics approach
-
Williams, R.E.; Major, H.; Lock, E.A.; Lenz, E.M.; Wilson, I.D. D-serine nephrotoxicity: a HPLC-TOF/MS-based metabonomics approach. Toxicology, 2005, 207, 179-209.
-
(2005)
Toxicology
, vol.207
, pp. 179-209
-
-
Williams, R.E.1
Major, H.2
Lock, E.A.3
Lenz, E.M.4
Wilson, I.D.5
-
63
-
-
66149143905
-
Comparative analysis of novel noninvasive renal biomarkers and metabonomic changes in a rat model of gen-tamycin nephrotoxicity
-
Sieber, M.; Hoffmann, D.; Adler, M.; Vaidya, V.S.; Clement, M.; Bonventre, J.V.; Zidek, N.; Rached, E.; Amberg, A.; Callanan, J.J.; Dekant, W.; Mally, A. Comparative analysis of novel noninvasive renal biomarkers and metabonomic changes in a rat model of gen-tamycin nephrotoxicity. Toxicol. Sci., 2009, 109, 336-349.
-
(2009)
Toxicol. Sci
, vol.109
, pp. 336-349
-
-
Sieber, M.1
Hoffmann, D.2
Adler, M.3
Vaidya, V.S.4
Clement, M.5
Bonventre, J.V.6
Zidek, N.7
Rached, E.8
Amberg, A.9
Callanan, J.J.10
Dekant, W.11
Mally, A.12
-
64
-
-
0027052705
-
Nuclear magnetic resonance spec-troscopy and pattern recognition analysis of the biochemical processes associated with the progression of and recovery from nephro-toxic lesions in the rat induced by mercury(II) chloride and 2-bromoethanamine
-
Holmes, E.; Bonner, F.W.; Sweatman, B.C.; Lindon, J.C.; Beddell, C.R.; Rahr, E.; Nicholson, J.K. Nuclear magnetic resonance spec-troscopy and pattern recognition analysis of the biochemical processes associated with the progression of and recovery from nephro-toxic lesions in the rat induced by mercury(II) chloride and 2-bromoethanamine. Mol. Pharmacol., 1992, 42, 922-930.
-
(1992)
Mol. Pharmacol
, vol.42
, pp. 922-930
-
-
Holmes, E.1
Bonner, F.W.2
Sweatman, B.C.3
Lindon, J.C.4
Beddell, C.R.5
Rahr, E.6
Nicholson, J.K.7
-
65
-
-
3042517107
-
A me-tabonomic investigation of the biochemical effects of mercuric chloride in the rat using 1H-NMR and HPLC-TOF/MS: Time dependent changes in the urinary profile of endogenous metabolites as a result of nephrotoxicity
-
Lenz, E.M.; Bright, J.; Knight, R.; Wilson, I.D.; Major, H. A me-tabonomic investigation of the biochemical effects of mercuric chloride in the rat using 1H-NMR and HPLC-TOF/MS: time dependent changes in the urinary profile of endogenous metabolites as a result of nephrotoxicity. Analyst, 2004, 129, 535-541.
-
(2004)
Analyst
, vol.129
, pp. 535-541
-
-
Lenz, E.M.1
Bright, J.2
Knight, R.3
Wilson, I.D.4
Major, H.5
-
66
-
-
0022254437
-
Proton NMR spectra of urine as indicators of renal damage. Mercury-induced nephrotoxic-ity in rats
-
Nicholson, J.K.; Timbrell, J.A.; Sadler, P.J. Proton NMR spectra of urine as indicators of renal damage. Mercury-induced nephrotoxic-ity in rats. Mol. Pharmacol., 1985, 27, 644-651.
-
(1985)
Mol. Pharmacol
, vol.27
, pp. 644-651
-
-
Nicholson, J.K.1
Timbrell, J.A.2
Sadler, P.J.3
-
67
-
-
0027953515
-
Studies of the biochemical toxicology of uranyl nitrate in the rat
-
Anthony, M.L.; Gartland, K.P.; Beddell, C.R.; Lindon, J.C.; Nicholson, J.K. Studies of the biochemical toxicology of uranyl nitrate in the rat. Arch. Toxicol., 1994, 68, 43-53.
-
(1994)
Arch. Toxicol
, vol.68
, pp. 43-53
-
-
Anthony, M.L.1
Gartland, K.P.2
Beddell, C.R.3
Lindon, J.C.4
Nicholson, J.K.5
-
68
-
-
61849137160
-
Urine metabolites reflect time-dependent effects of cyclosporine and sirolimus on rat kidney function
-
Klawitter, J.; Bendrick-Peart, J.; Rudolph, B.; Beckey, V.; Klawit-ter, J.; Haschke, M.; Rivard, C.; Chan, L.; Leibfritz, D.; Christians, U.; Schmitz, V. Urine metabolites reflect time-dependent effects of cyclosporine and sirolimus on rat kidney function. Chem. Res. Toxicol., 2009, 22, 118-128.
-
(2009)
Chem. Res. Toxicol
, vol.22
, pp. 118-128
-
-
Klawitter, J.1
Bendrick-Peart, J.2
Rudolph, B.3
Beckey, V.4
Klawit-Ter, J.5
Haschke, M.6
Rivard, C.7
Chan, L.8
Leibfritz, D.9
Christians, U.10
Schmitz, V.11
-
69
-
-
67651002878
-
Metabonomic study of ochratoxin A toxicity in rats after repeat administration: Phenotypic anchoring enhances the ability for biomarker discovery
-
Sieber, M.; Wagner, S.; Rached, E.; Amberg, A.; Mally, A.; Dekant, W. Metabonomic study of ochratoxin A toxicity in rats after repeat administration: phenotypic anchoring enhances the ability for biomarker discovery. Chem. Res. Toxicol., 2009, 22, 1221-1231.
-
(2009)
Chem. Res. Toxicol
, vol.22
, pp. 1221-1231
-
-
Sieber, M.1
Wagner, S.2
Rached, E.3
Amberg, A.4
Mally, A.5
Dekant, W.6
-
70
-
-
33745111884
-
Metabolomic study of cisplatin-induced nephrotoxicity
-
Portilla, D.; Li, S.; Nagothu, K.K.; Megyesi, J.; Kaissling, B.; Schnackenberg, L.; Safirstein, R.L.; Beger, R.D. Metabolomic study of cisplatin-induced nephrotoxicity. Kidney Int., 2006, 69, 2194-2204.
-
(2006)
Kidney Int
, vol.69
, pp. 2194-2204
-
-
Portilla, D.1
Li, S.2
Nagothu, K.K.3
Megyesi, J.4
Kaissling, B.5
Schnackenberg, L.6
Safirstein, R.L.7
Beger, R.D.8
-
71
-
-
2342483689
-
1H NMR spec-troscopy, HPLC-TOF/MS and chemometrics
-
1H NMR spec-troscopy, HPLC-TOF/MS and chemometrics. J Pharm. Biomed. Anal., 2004, 35, 599-608.
-
(2004)
J Pharm. Biomed. Anal
, vol.35
, pp. 599-608
-
-
Lenz, E.M.1
Bright, J.2
Knight, R.3
Wilson, I.D.4
Major, H.5
-
72
-
-
21444445989
-
1H-NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamycin-induced neph-rotoxicity in the rat
-
1H-NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamycin-induced neph-rotoxicity in the rat. Biomarkers, 2005, 10, 173-187.
-
(2005)
Biomarkers
, vol.10
, pp. 173-187
-
-
Lenz, E.M.1
Bright, J.2
Knight, R.3
Westwood, F.R.4
Davies, D.5
Major, H.6
Wilson, I.D.7
-
73
-
-
60549096668
-
1H-NMR spec-troscopy
-
1H-NMR spec-troscopy. J. Toxicol. Environ. Health A., 2009, 72, 374-384.
-
(2009)
J. Toxicol. Environ. Health A
, vol.72
, pp. 374-384
-
-
Park, J.C.1
Hong, Y.S.2
Kim, Y.J.3
Yang, J.Y.4
Kim, E.Y.5
Kwack, S.J.6
do Ryu, H.7
Hwang, G.S.8
Lee, B.M.9
-
74
-
-
0028988593
-
2H NMR spectroscopic studies on the metabolism and biochemical effects of 2-bromoethanamine in the rat
-
2H NMR spectroscopic studies on the metabolism and biochemical effects of 2-bromoethanamine in the rat. Biochem. Pharmacol., 1995, 49, 1349-1359.
-
(1995)
Biochem. Pharmacol
, vol.49
, pp. 1349-1359
-
-
Holmes, E.1
Caddick, S.2
Lindon, J.C.3
Wilson, I.D.4
Kryvawych, S.5
Nicholson, J.K.6
-
75
-
-
84940930727
-
Guidance for the Industry
-
U.S. Department of Health and Human Services, Food and Drug Administration, Center for Drug Evaluation and Research and Center for Veterinary Medicine, last accessed 29 August 2010
-
U.S. Department of Health and Human Services, Food and Drug Administration, Center for Drug Evaluation and Research and Center for Veterinary Medicine. (2001) Guidance for the Industry. Bioanalytical Method Validation. Version May 2001. http://www.fda.gov/downloads/Drugs/GuidanceComplianceRegula toryInformation/Guidances/UCM070107.pdf [last accessed 29 August 2010]
-
(2001)
Bioanalytical Method Validation
-
-
-
76
-
-
84873078681
-
-
Clinical Laboratory and Standard Institute, last accessed 29 August 2010
-
Clinical Laboratory and Standard Institute, www.clsi.org [last accessed 29 August 2010]
-
-
-
-
77
-
-
84873080535
-
Validation of analytical procedures: Text and methodology
-
European Agency for the Evaluation of Medicinal Products ICH topic Q2 (R1), CPMP ICH/381/95, last accessed 29 August 2010
-
European Agency for the Evaluation of Medicinal Products ICH topic Q2 (R1). Validation of analytical procedures: text and methodology. Note for guidance on analytical procedures: Text and methodology. CPMP ICH/381/95. 1995. http://www.ema.euro-pa.eu/docs/en_GB/document_library/Scientific_guideline/2009/09/WC500002662.pdf [last accessed 29 August 2010)
-
(1995)
Note For Guidance On Analytical Procedures: Text and Methodology
-
-
-
78
-
-
34247857367
-
Development and validation of an assay for the quantification of 11 nucleotides using LC/LC-electrospray ionization-MS
-
Klawitter, J.; Schmitz, V.; Klawitter, J.; Leibfritz, D.; Christians, U. Development and validation of an assay for the quantification of 11 nucleotides using LC/LC-electrospray ionization-MS. Anal. Biochem., 2007, 365, 230-239.
-
(2007)
Anal. Biochem
, vol.365
, pp. 230-239
-
-
Klawitter, J.1
Schmitz, V.2
Klawitter, J.3
Leibfritz, D.4
Christians, U.5
-
79
-
-
39549099714
-
Candidate List of yoUr Biomarker (CLUB): A web-based platform to aid cancer biomarker research
-
Lee, B.T.; Liew, L.; Lim, J.; Tan, J.K.; Lee, T.C.; Veladandi, P.S.; Lim, Y.P.; Han, H.; Rajagopal, G.; Anderson, N.L. Candidate List of yoUr Biomarker (CLUB): A web-based platform to aid cancer biomarker research. Biomark. Insights, 2008, 3, 65-71.
-
(2008)
Biomark. Insights
, vol.3
, pp. 65-71
-
-
Lee, B.T.1
Liew, L.2
Lim, J.3
Tan, J.K.4
Lee, T.C.5
Veladandi, P.S.6
Lim, Y.P.7
Han, H.8
Rajagopal, G.9
Anderson, N.L.10
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